assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000520055.1_ASM52005v1	NZ_CP006262	Escherichia coli O145:H28 str. RM13516 chromosome, complete genome	1	2889457-2889588	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|891aa|up_9|NZ_CP006262.1_2862952_2865625_+	PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	NA|217aa|up_8|NZ_CP006262.1_2865641_2866292_+	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|950aa|up_7|NZ_CP006262.1_2866491_2869341_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|259aa|up_6|NZ_CP006262.1_2869615_2870392_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|up_5|NZ_CP006262.1_2876583_2877207_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP006262.1_2877203_2878892_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP006262.1_2879040_2881668_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP006262.1_2881814_2882537_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP006262.1_2882677_2886430_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP006262.1_2887125_2889411_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP006262.1_2889644_2890775_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP006262.1_2890774_2891029_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP006262.1_2891082_2891733_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|397aa|down_3|NZ_CP006262.1_2891813_2893004_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|293aa|down_4|NZ_CP006262.1_2893168_2894047_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|360aa|down_5|NZ_CP006262.1_2894091_2895171_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_6|NZ_CP006262.1_2895175_2896534_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_7|NZ_CP006262.1_2896805_2898434_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_8|NZ_CP006262.1_2898423_2899683_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_9|NZ_CP006262.1_2899679_2900870_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
GCF_000520055.1_ASM52005v1	NZ_CP006262	Escherichia coli O145:H28 str. RM13516 chromosome, complete genome	2	2970789-2970914	2	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGTCGGATGCGGCGTAAACGCCTTATCCGACCTAC	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|298aa|up_9|NZ_CP006262.1_2961569_2962463_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|297aa|up_8|NZ_CP006262.1_2962510_2963401_-	PRK09857, PRK09857, recombination-promoting nuclease RpnA	NA|258aa|up_7|NZ_CP006262.1_2963597_2964371_-	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP	NA|239aa|up_6|NZ_CP006262.1_2964378_2965095_-	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|229aa|up_5|NZ_CP006262.1_2965091_2965778_-	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|261aa|up_4|NZ_CP006262.1_2965867_2966650_-	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional	NA|261aa|up_3|NZ_CP006262.1_2966870_2967653_-	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT	NA|190aa|up_2|NZ_CP006262.1_2967917_2968487_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|up_1|NZ_CP006262.1_2968581_2970099_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|163aa|up_0|NZ_CP006262.1_2970135_2970624_-	PRK10845, PRK10845, colicin V production protein; Provisional	NA|221aa|down_0|NZ_CP006262.1_2970973_2971636_-	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|423aa|down_1|NZ_CP006262.1_2971625_2972894_-	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|305aa|down_2|NZ_CP006262.1_2972963_2973878_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|220aa|down_3|NZ_CP006262.1_2974033_2974693_-	PRK10847, PRK10847, DedA family protein	NA|271aa|down_4|NZ_CP006262.1_2974775_2975588_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|338aa|down_5|NZ_CP006262.1_2975587_2976601_-	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|379aa|down_6|NZ_CP006262.1_2976666_2977803_-	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|332aa|down_7|NZ_CP006262.1_2977901_2978897_+	PRK10715, flk, flagella biosynthesis regulator Flk	NA|393aa|down_8|NZ_CP006262.1_2978893_2980072_-	PRK12382, PRK12382, putative transporter; Provisional	NA|407aa|down_9|NZ_CP006262.1_2980346_2981567_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I
GCF_000520055.1_ASM52005v1	NZ_CP006262	Escherichia coli O145:H28 str. RM13516 chromosome, complete genome	3	3191627-3191750	3	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGTCGGATGCGGCGTGAACGCCATATCCGACCT	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|259aa|up_9|NZ_CP006262.1_3183407_3184184_-	PRK11611, PRK11611, enhanced serine sensitivity protein SseB; Provisional	NA|428aa|up_8|NZ_CP006262.1_3184326_3185610_-	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|67aa|up_7|NZ_CP006262.1_3185854_3186055_-	PRK10721, PRK10721, hypothetical protein; Provisional	NA|112aa|up_6|NZ_CP006262.1_3186066_3186402_-	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system	NA|617aa|up_5|NZ_CP006262.1_3186403_3188254_-	PRK05183, hscA, chaperone protein HscA; Provisional	NA|172aa|up_4|NZ_CP006262.1_3188270_3188786_-	PRK05014, hscB, co-chaperone HscB; Provisional	NA|108aa|up_3|NZ_CP006262.1_3188881_3189205_-	PRK09502, iscA, iron-sulfur cluster assembly protein IscA	NA|129aa|up_2|NZ_CP006262.1_3189221_3189608_-	PRK11325, PRK11325, scaffold protein; Provisional	NA|405aa|up_1|NZ_CP006262.1_3189635_3190850_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|163aa|up_0|NZ_CP006262.1_3190961_3191450_-	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR	NA|247aa|down_0|NZ_CP006262.1_3191810_3192551_-	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional	NA|268aa|down_1|NZ_CP006262.1_3192669_3193473_+	PRK10757, PRK10757, inositol-1-monophosphatase	NA|285aa|down_2|NZ_CP006262.1_3193617_3194472_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|427aa|down_3|NZ_CP006262.1_3194662_3195943_+	PRK11564, PRK11564, stationary phase inducible protein CsiE; Provisional	NA|380aa|down_4|NZ_CP006262.1_3195934_3197074_-	PRK11128, PRK11128, 3-phenylpropionate MFS transporter	NA|297aa|down_5|NZ_CP006262.1_3197233_3198124_-	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional	NA|454aa|down_6|NZ_CP006262.1_3198259_3199621_+	cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases	NA|173aa|down_7|NZ_CP006262.1_3199617_3200136_+	PRK10069, PRK10069, 3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA|107aa|down_8|NZ_CP006262.1_3200135_3200456_+	PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional	NA|328aa|down_9|NZ_CP006262.1_3202399_3203383_-	cd06317, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
GCF_000520055.1_ASM52005v1	NZ_CP006262	Escherichia coli O145:H28 str. RM13516 chromosome, complete genome	4	3425838-3426415	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,3	9	TypeI-E	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP006262.1_3417711_3418473_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP006262.1_3418453_3419503_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP006262.1_3419499_3419979_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP006262.1_3419978_3420689_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP006262.1_3420707_3421019_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP006262.1_3421212_3421536_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP006262.1_3421585_3422191_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP006262.1_3422190_3423618_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP006262.1_3423619_3424528_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP006262.1_3424779_3425817_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP006262.1_3426520_3426805_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP006262.1_3426806_3427724_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP006262.1_3427739_3428339_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP006262.1_3428325_3429000_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP006262.1_3429002_3430094_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP006262.1_3430106_3430589_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP006262.1_3430581_3432090_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP006262.1_3432504_3435171_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP006262.1_3435529_3436264_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP006262.1_3436337_3438050_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000520055.1_ASM52005v1	NZ_CP006262	Escherichia coli O145:H28 str. RM13516 chromosome, complete genome	5	3451902-3452052	5,2	CRISPRCasFinder,PILER-CR	no	cas3	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGCCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	27,29	0	0	NA	NA	I-E:I-E	2,2	2	Unclear	DEDDh,DinG,PrimPol,cas3,RT,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|424aa|up_9|NZ_CP006262.1_3440607_3441879_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP006262.1_3441869_3442130_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP006262.1_3442146_3442722_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP006262.1_3442868_3443729_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP006262.1_3443725_3444505_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP006262.1_3444482_3445892_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP006262.1_3445913_3447368_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP006262.1_3447437_3448223_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP006262.1_3448541_3449819_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP006262.1_3449845_3451324_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP006262.1_3452390_3453062_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP006262.1_3453234_3453837_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|298aa|down_2|NZ_CP006262.1_3453850_3454744_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP006262.1_3454758_3455907_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|301aa|down_4|NZ_CP006262.1_3455903_3456806_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP006262.1_3456865_3458164_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP006262.1_3458251_3459889_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP006262.1_3460116_3460908_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP006262.1_3460978_3461314_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP006262.1_3461313_3461562_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
