bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4.1|854387|26|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.15	26	1	0	1	26	817349	817324	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	817324-817349	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4.1|854387|26|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.15	26	1	0	1	26	960436	960411	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	960411-960436	CGGGGCCCCAACACAGAGGCTGGCGG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4.1|854387|26|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.15	26	1	0	1	26	2878474	2878499	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2878474-2878499	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4.1|854387|26|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.15	26	1	0	1	26	2878530	2878555	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2878530-2878555	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4.1|854387|26|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	92.31	26	2	0	1	26	817405	817380	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	817380-817405	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4.1|854387|26|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	92.31	26	2	0	1	26	960380	960355	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	960355-960380	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	5.1|897594|34|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	100.00	34	0	0	1	34	1386472	1386439	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1386439-1386472	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	5.1|897594|34|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	100.00	34	0	0	1	34	1475631	1475664	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1475631-1475664	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7.1|2079002|33|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.97	33	1	0	1	33	854423	854455	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	854423-854455	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7.1|2079002|33|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.97	33	1	0	1	33	1178301	1178269	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1178269-1178301	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7.1|2079002|33|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.97	33	1	0	1	33	1386426	1386394	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1386394-1386426	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7.1|2079002|33|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.97	33	1	0	1	33	1700907	1700939	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1700907-1700939	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7.1|2079002|33|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	96.97	33	1	0	1	33	2713120	2713152	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2713120-2713152	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7.1|2079002|33|NZ_CP007176|CRISPRCasFinder	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	1475677	1475709	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1475677-1475709	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.1|2437872|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	854423	854455	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	854423-854455	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.1|2437872|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	1178301	1178269	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1178269-1178301	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.1|2437872|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	1386426	1386394	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1386394-1386426	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.1|2437872|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	1475677	1475709	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1475677-1475709	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.1|2437872|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	2713120	2713152	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2713120-2713152	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.2|2437928|36|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	100.00	36	0	0	1	36	1178248	1178213	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1178213-1178248	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.2|2437928|36|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	97.22	36	1	0	1	36	1879394	1879359	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1879359-1879394	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.2|2437928|36|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	94.44	36	2	0	1	36	1700846	1700881	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1700846-1700881	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.2|2437928|36|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	94.44	36	2	0	1	36	2089805	2089840	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2089805-2089840	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.3|2437987|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	854423	854455	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	854423-854455	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.3|2437987|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	1178301	1178269	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1178269-1178301	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.3|2437987|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	1386426	1386394	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1386394-1386426	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9.3|2437987|33|NZ_CP007176|CRT	NZ_CP007176.1	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	93.94	33	2	0	1	33	2713120	2713152	434270-434370|678609-678701|754950-755048|854357-854442|897570-897651|1093938-1094025|2078979-2079057|2313932-2314082|2437849-2438042	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2713120-2713152	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
