assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000569035.1_ASM56903v1	NZ_CP006714	Bifidobacterium breve NCFB 2258, complete genome	1	1635804-1636582	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	11,11,10	11	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_2|NZ_CP006714.1_1644014_1644248_-	NA|238aa|up_9|NZ_CP006714.1_1622421_1623135_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP006714.1_1623194_1624769_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP006714.1_1624822_1625518_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP006714.1_1625538_1626291_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP006714.1_1626338_1628648_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP006714.1_1628797_1629502_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP006714.1_1629640_1630654_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP006714.1_1630948_1632811_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP006714.1_1632977_1633262_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP006714.1_1633547_1634768_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|500aa|down_0|NZ_CP006714.1_1637349_1638849_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|down_1|NZ_CP006714.1_1638845_1639625_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|78aa|down_2|NZ_CP006714.1_1644014_1644248_-	NA	cas2|97aa|down_3|NZ_CP006714.1_1644710_1645001_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_4|NZ_CP006714.1_1645057_1646089_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_5|NZ_CP006714.1_1646090_1646780_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_6|NZ_CP006714.1_1646818_1647670_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_7|NZ_CP006714.1_1647673_1649632_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_8|NZ_CP006714.1_1649634_1650339_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_9|NZ_CP006714.1_1650345_1652784_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCF_000569035.1_ASM56903v1	NZ_CP006714	Bifidobacterium breve NCFB 2258, complete genome	2	1641128-1643189	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	30,30,30	30	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP006714.1_1644014_1644248_-	NA|232aa|up_9|NZ_CP006714.1_1624822_1625518_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_8|NZ_CP006714.1_1625538_1626291_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_7|NZ_CP006714.1_1626338_1628648_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_6|NZ_CP006714.1_1628797_1629502_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_5|NZ_CP006714.1_1629640_1630654_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_4|NZ_CP006714.1_1630948_1632811_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_3|NZ_CP006714.1_1632977_1633262_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_2|NZ_CP006714.1_1633547_1634768_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|500aa|up_1|NZ_CP006714.1_1637349_1638849_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|up_0|NZ_CP006714.1_1638845_1639625_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|78aa|down_0|NZ_CP006714.1_1644014_1644248_-	NA	cas2|97aa|down_1|NZ_CP006714.1_1644710_1645001_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP006714.1_1645057_1646089_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP006714.1_1646090_1646780_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP006714.1_1646818_1647670_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP006714.1_1647673_1649632_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP006714.1_1649634_1650339_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NZ_CP006714.1_1650345_1652784_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|205aa|down_8|NZ_CP006714.1_1653372_1653987_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|1103aa|down_9|NZ_CP006714.1_1654405_1657714_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_000569035.1_ASM56903v1	NZ_CP006714	Bifidobacterium breve NCFB 2258, complete genome	3	2061923-2062069	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP006714.1_2057119_2059219_+,NA|318aa|down_0|NZ_CP006714.1_2062183_2063137_+	NA|145aa|up_9|NZ_CP006714.1_2040514_2040949_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3171aa|up_8|NZ_CP006714.1_2041827_2051340_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP006714.1_2051379_2053002_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP006714.1_2052994_2054875_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP006714.1_2055387_2055987_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP006714.1_2055988_2056948_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP006714.1_2057119_2059219_+	NA	NA|286aa|up_2|NZ_CP006714.1_2059297_2060155_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP006714.1_2060427_2061120_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP006714.1_2061135_2061567_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP006714.1_2062183_2063137_+	NA	NA|276aa|down_1|NZ_CP006714.1_2063492_2064320_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP006714.1_2064352_2064580_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP006714.1_2064909_2066115_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|417aa|down_4|NZ_CP006714.1_2066255_2067506_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP006714.1_2067601_2068735_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP006714.1_2068841_2070533_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP006714.1_2070599_2070851_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP006714.1_2070873_2071182_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1006aa|down_9|NZ_CP006714.1_2071368_2074386_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_000569035.1_ASM56903v1	NZ_CP006714	Bifidobacterium breve NCFB 2258, complete genome	4	2207146-2207222	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|90aa|up_9|NZ_CP006714.1_2190610_2190880_+,NA	NA|90aa|up_9|NZ_CP006714.1_2190610_2190880_+	NA	NA|350aa|up_8|NZ_CP006714.1_2190999_2192049_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP006714.1_2192678_2194097_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP006714.1_2194201_2195143_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP006714.1_2195151_2196981_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP006714.1_2197112_2198981_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP006714.1_2199164_2199686_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP006714.1_2200623_2202147_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP006714.1_2202400_2206159_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP006714.1_2206168_2206870_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP006714.1_2207352_2208825_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP006714.1_2208876_2209482_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP006714.1_2209632_2210475_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP006714.1_2210474_2211329_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP006714.1_2211699_2212716_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP006714.1_2212923_2214252_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP006714.1_2214672_2215371_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP006714.1_2215457_2215835_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP006714.1_2215930_2216698_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP006714.1_2216864_2219612_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
