assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000577745.1_6179_18022011	NZ_HG813249	Listeria monocytogenes 6179	1	49-414	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	Type II-B,Type II-A,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	1	1	349-378	NZ_HG813249.1_1558031-1558002	II-A,II-B:II-A,II-B:II-A,II-B	5,5,5	5	TypeII-B,TypeII-A,TypeII-C	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	NA,NA|163aa|down_4|NZ_HG813249.1_6928_7417_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	csn2|221aa|down_0|NZ_HG813249.1_542_1205_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_HG813249.1_1194_1536_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_HG813249.1_1532_2399_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_HG813249.1_2399_6404_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|163aa|down_4|NZ_HG813249.1_6928_7417_-	NA	NA|462aa|down_5|NZ_HG813249.1_7426_8812_-	pfam04740, LXG, LXG domain of WXG superfamily	NA|131aa|down_6|NZ_HG813249.1_9103_9496_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_7|NZ_HG813249.1_9517_9955_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_8|NZ_HG813249.1_10149_10896_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_9|NZ_HG813249.1_10901_11699_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]
GCF_000577745.1_6179_18022011	NZ_HG813249	Listeria monocytogenes 6179	2	774192-774776	2	CRT	no	WYL	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	NA,NA|158aa|down_0|NZ_HG813249.1_775669_776143_+,NA|162aa|down_1|NZ_HG813249.1_776162_776648_+,NA|89aa|down_3|NZ_HG813249.1_777056_777323_+,NA|123aa|down_5|NZ_HG813249.1_778147_778516_+,NA|91aa|down_6|NZ_HG813249.1_779910_780183_+,NA|116aa|down_7|NZ_HG813249.1_780210_780558_+,NA|81aa|down_8|NZ_HG813249.1_780961_781204_+	NA|252aa|up_9|NZ_HG813249.1_757657_758413_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_HG813249.1_758529_760689_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_HG813249.1_760685_761834_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_HG813249.1_761838_762786_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_HG813249.1_762941_764537_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_HG813249.1_764670_765954_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_HG813249.1_765954_767055_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_HG813249.1_767047_768598_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_HG813249.1_769225_770764_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|679aa|up_0|NZ_HG813249.1_771362_773399_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_HG813249.1_775669_776143_+	NA	NA|162aa|down_1|NZ_HG813249.1_776162_776648_+	NA	NA|102aa|down_2|NZ_HG813249.1_776675_776981_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_HG813249.1_777056_777323_+	NA	NA|95aa|down_4|NZ_HG813249.1_777862_778147_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_5|NZ_HG813249.1_778147_778516_+	NA	NA|91aa|down_6|NZ_HG813249.1_779910_780183_+	NA	NA|116aa|down_7|NZ_HG813249.1_780210_780558_+	NA	NA|81aa|down_8|NZ_HG813249.1_780961_781204_+	NA	NA|326aa|down_9|NZ_HG813249.1_781286_782264_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]
GCF_000577745.1_6179_18022011	NZ_HG813249	Listeria monocytogenes 6179	3	809631-809981	2,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAATT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTNTGAAATGTAAATT	30,29,30	4	6	809789-809822|809789-809822|809853-809887|809788-809822|809788-809822|809852-809887	NZ_HG813249.1_1735084-1735051|NZ_HG813249.1_1561062-1561029|NZ_HG813249.1_1735586-1735620|NZ_HG813249.1_1735085-1735051|NZ_HG813249.1_1561063-1561029|NZ_HG813249.1_1735585-1735620	I-A:I-A:I-A	5,5,5	5	Unclear	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	NA|133aa|up_5|NZ_HG813249.1_804620_805019_+,NA|193aa|down_0|NZ_HG813249.1_810370_810949_+	NA|217aa|up_9|NZ_HG813249.1_800683_801334_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_HG813249.1_801442_803503_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_HG813249.1_803506_804109_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_HG813249.1_804136_804604_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_HG813249.1_804620_805019_+	NA	NA|217aa|up_4|NZ_HG813249.1_805029_805680_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_HG813249.1_805676_806723_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_HG813249.1_806738_807032_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_HG813249.1_807046_808318_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_HG813249.1_808457_809393_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_HG813249.1_810370_810949_+	NA	NA|227aa|down_1|NZ_HG813249.1_811055_811736_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_HG813249.1_811760_812120_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_HG813249.1_812126_812585_-	pfam12802, MarR_2, MarR family	NA|144aa|down_4|NZ_HG813249.1_814902_815334_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_5|NZ_HG813249.1_815380_816811_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_6|NZ_HG813249.1_816931_817747_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_7|NZ_HG813249.1_818098_818821_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_8|NZ_HG813249.1_818836_820525_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|down_9|NZ_HG813249.1_820514_821384_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP
GCF_000577745.1_6179_18022011	NZ_HG813249	Listeria monocytogenes 6179	4	825174-827484	3,3,4,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29,29	3	3	825932-825967|826189-826222|827226-827262	NZ_HG813249.1_1733355-1733390|NZ_HG813249.1_1733964-1733997|NZ_HG813249.1_1850997-1851033	I-A:I-A:I-A:I-A	32,35,35,32	35	Unclear	csn2,cas2,cas1,cas9,csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,DEDDh	NA,NA|148aa|down_5|NZ_HG813249.1_833029_833473_+,NA|492aa|down_9|NZ_HG813249.1_837781_839257_+	NA|153aa|up_9|NZ_HG813249.1_812126_812585_-	pfam12802, MarR_2, MarR family	NA|144aa|up_8|NZ_HG813249.1_814902_815334_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_HG813249.1_815380_816811_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_HG813249.1_816931_817747_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_HG813249.1_818098_818821_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_HG813249.1_818836_820525_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_HG813249.1_820514_821384_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_HG813249.1_821361_822144_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_HG813249.1_822211_824395_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_HG813249.1_824697_824976_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_HG813249.1_827556_827925_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_HG813249.1_828071_829487_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_HG813249.1_829618_830623_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_HG813249.1_830654_831971_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_HG813249.1_832171_832924_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_HG813249.1_833029_833473_+	NA	NA|554aa|down_6|NZ_HG813249.1_833518_835180_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_HG813249.1_835435_836767_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_HG813249.1_836811_837552_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_HG813249.1_837781_839257_+	NA
