assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	1	210184-210275	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|70aa|up_9|NZ_CP007265.1_199261_199471_-,NA	NA|70aa|up_9|NZ_CP007265.1_199261_199471_-	NA	NA|1321aa|up_8|NZ_CP007265.1_199525_203488_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP007265.1_203526_204165_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP007265.1_204452_205544_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP007265.1_205543_206236_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP007265.1_206247_206634_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP007265.1_206641_207442_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP007265.1_207451_208042_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP007265.1_208052_208547_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP007265.1_208567_209896_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP007265.1_210698_211295_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP007265.1_211315_211543_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP007265.1_211580_212822_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|417aa|down_3|NZ_CP007265.1_213116_214367_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP007265.1_214626_215547_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP007265.1_215546_215852_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP007265.1_216003_216603_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP007265.1_216599_219146_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP007265.1_219145_220318_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP007265.1_220447_221140_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	2	352542-352747	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|431aa|up_9|NZ_CP007265.1_337665_338958_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP007265.1_339048_340392_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP007265.1_340402_341014_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP007265.1_341168_345158_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP007265.1_345292_345787_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP007265.1_346331_347297_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP007265.1_347419_349186_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP007265.1_349186_350908_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP007265.1_350949_351654_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP007265.1_351938_352157_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP007265.1_352957_355234_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP007265.1_355264_355585_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP007265.1_355907_356132_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP007265.1_356204_358151_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP007265.1_358147_359263_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP007265.1_359413_360370_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP007265.1_360366_362025_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_7|NZ_CP007265.1_363602_364502_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_CP007265.1_364645_366298_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_CP007265.1_366309_367278_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	3	518037-518181	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|147aa|up_8|NZ_CP007265.1_513129_513570_+,NA|79aa|up_7|NZ_CP007265.1_513566_513803_+,NA|106aa|up_6|NZ_CP007265.1_513799_514117_+,NA|56aa|up_3|NZ_CP007265.1_515079_515247_+,NA	NA|55aa|up_9|NZ_CP007265.1_512968_513133_+	pfam10930, DUF2737, Protein of unknown function (DUF2737)	NA|147aa|up_8|NZ_CP007265.1_513129_513570_+	NA	NA|79aa|up_7|NZ_CP007265.1_513566_513803_+	NA	NA|106aa|up_6|NZ_CP007265.1_513799_514117_+	NA	NA|180aa|up_5|NZ_CP007265.1_514103_514643_+	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|93aa|up_4|NZ_CP007265.1_514642_514921_+	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|56aa|up_3|NZ_CP007265.1_515079_515247_+	NA	NA|73aa|up_2|NZ_CP007265.1_515286_515505_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP007265.1_515482_516553_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP007265.1_516687_517971_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP007265.1_518204_520466_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP007265.1_520648_522082_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP007265.1_522157_523210_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP007265.1_523393_524347_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP007265.1_524387_525383_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP007265.1_525537_526356_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP007265.1_526356_527415_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP007265.1_527417_528107_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP007265.1_528106_528880_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP007265.1_529046_529196_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	4	755946-756042	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|231aa|up_9|NZ_CP007265.1_747741_748434_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP007265.1_748653_749196_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP007265.1_749666_750533_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP007265.1_750534_750747_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP007265.1_750854_751376_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP007265.1_751411_752797_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP007265.1_752970_753465_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP007265.1_753467_754190_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP007265.1_754307_754817_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP007265.1_754813_755881_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP007265.1_756085_756979_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP007265.1_756975_757791_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP007265.1_757801_759061_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP007265.1_759070_760738_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP007265.1_761054_762104_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP007265.1_762125_763361_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP007265.1_763371_764157_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP007265.1_764384_765530_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP007265.1_765551_766853_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP007265.1_766909_768271_-	PRK08044, PRK08044, allantoinase AllB
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	5	889608-889752	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA|28aa|down_2|NZ_CP007265.1_891797_891881_-	NA|357aa|up_9|NZ_CP007265.1_874749_875820_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP007265.1_875912_876494_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP007265.1_876498_878316_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP007265.1_878471_879845_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP007265.1_879920_881240_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP007265.1_881646_882942_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP007265.1_882999_883689_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP007265.1_883878_885081_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1048aa|up_1|NZ_CP007265.1_885077_888221_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP007265.1_888346_889531_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP007265.1_889775_890684_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP007265.1_890808_891720_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP007265.1_891797_891881_-	NA	NA|95aa|down_3|NZ_CP007265.1_892367_892652_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP007265.1_892723_893401_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP007265.1_893658_893850_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP007265.1_893899_894424_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP007265.1_894600_895065_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP007265.1_895184_895994_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP007265.1_896010_897126_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	6	1293484-1293613	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCAT	40	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|621aa|up_9|NZ_CP007265.1_1277814_1279677_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_8|NZ_CP007265.1_1279669_1280200_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|96aa|up_7|NZ_CP007265.1_1281698_1281986_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_6|NZ_CP007265.1_1281982_1283269_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_5|NZ_CP007265.1_1283319_1284261_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|381aa|up_4|NZ_CP007265.1_1287840_1288983_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP007265.1_1289111_1290329_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP007265.1_1290402_1291956_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP007265.1_1292064_1292850_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP007265.1_1292855_1293446_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP007265.1_1293654_1294050_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP007265.1_1294311_1297533_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP007265.1_1297550_1298699_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP007265.1_1299154_1299976_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP007265.1_1300142_1301057_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP007265.1_1301122_1302073_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP007265.1_1302074_1302524_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP007265.1_1302648_1303143_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP007265.1_1303142_1305959_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP007265.1_1306001_1306943_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	7	2298382-2299631	2,7,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	18,20,20,18	20	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|47aa|up_1|NZ_CP007265.1_2297091_2297232_-,NA	NA|434aa|up_9|NZ_CP007265.1_2287788_2289090_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP007265.1_2289137_2291372_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP007265.1_2291449_2291698_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP007265.1_2291697_2292033_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP007265.1_2292103_2292895_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP007265.1_2293122_2294760_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP007265.1_2294847_2296146_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP007265.1_2296205_2297078_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP007265.1_2297091_2297232_-	NA	NA|224aa|up_0|NZ_CP007265.1_2297370_2298042_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP007265.1_2300269_2301748_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP007265.1_2301774_2303052_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP007265.1_2303370_2304156_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP007265.1_2304225_2305680_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP007265.1_2305701_2307111_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP007265.1_2307088_2307868_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP007265.1_2307864_2308725_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP007265.1_2308872_2309448_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP007265.1_2309464_2309725_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP007265.1_2309715_2310987_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	8	2326441-2326957	8,4	CRISPRCasFinder,PILER-CR	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGTCAGCGGGGATAAACCG	29,27	0	0	NA	NA	I-E:I-E	8,8	8	TypeI-E	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|571aa|up_9|NZ_CP007265.1_2313544_2315257_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP007265.1_2315330_2316065_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|388aa|up_7|NZ_CP007265.1_2317926_2319089_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas8e|503aa|up_6|NZ_CP007265.1_2320765_2322274_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP007265.1_2322266_2322749_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP007265.1_2322761_2323853_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP007265.1_2323855_2324530_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP007265.1_2324516_2325116_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP007265.1_2325131_2326049_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP007265.1_2326050_2326335_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP007265.1_2327038_2328076_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP007265.1_2328327_2329236_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP007265.1_2329237_2330665_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP007265.1_2330664_2331270_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP007265.1_2331319_2331643_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP007265.1_2331836_2332148_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP007265.1_2332166_2332877_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP007265.1_2332876_2333356_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP007265.1_2333352_2334402_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP007265.1_2334382_2335144_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	9	2444581-2444730	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|191aa|up_6|NZ_CP007265.1_2435512_2436085_+,NA|528aa|down_6|NZ_CP007265.1_2451926_2453510_-	NA|256aa|up_9|NZ_CP007265.1_2432345_2433113_+	PRK11231, fecE, Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA|86aa|up_8|NZ_CP007265.1_2433670_2433928_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|117aa|up_7|NZ_CP007265.1_2435061_2435412_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|191aa|up_6|NZ_CP007265.1_2435512_2436085_+	NA	NA|275aa|up_5|NZ_CP007265.1_2436133_2436958_-	pfam18863, AbiJ_NTD4, AbiJ N-terminal domain 4	NA|340aa|up_4|NZ_CP007265.1_2437771_2438791_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP007265.1_2438920_2440423_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP007265.1_2440583_2441666_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP007265.1_2441665_2442766_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP007265.1_2443032_2444544_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP007265.1_2444897_2445341_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP007265.1_2445340_2448196_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP007265.1_2448249_2449446_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP007265.1_2449638_2450142_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP007265.1_2450187_2450604_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP007265.1_2450765_2451770_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|528aa|down_6|NZ_CP007265.1_2451926_2453510_-	NA	NA|151aa|down_7|NZ_CP007265.1_2453632_2454085_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP007265.1_2454229_2454823_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP007265.1_2454893_2455607_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	10	3107720-3107846	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|950aa|up_9|NZ_CP007265.1_3084779_3087629_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|259aa|up_8|NZ_CP007265.1_3087903_3088680_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP007265.1_3088684_3090334_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP007265.1_3090334_3094729_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP007265.1_3094872_3095496_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP007265.1_3095492_3097181_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP007265.1_3097329_3099957_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP007265.1_3100103_3100826_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1245aa|up_1|NZ_CP007265.1_3100953_3104688_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP007265.1_3105383_3107669_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP007265.1_3107902_3109033_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP007265.1_3109032_3109287_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP007265.1_3109340_3109991_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP007265.1_3110453_3111530_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP007265.1_3111534_3112893_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP007265.1_3113165_3114794_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP007265.1_3114783_3116043_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP007265.1_3116039_3117230_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_8|NZ_CP007265.1_3117423_3118326_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP007265.1_3118366_3119170_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_000597845.1_ASM59784v1	NZ_CP007265	Escherichia coli strain ST540 chromosome, complete genome	11	3861654-3861777	11	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA|30aa|down_7|NZ_CP007265.1_3870673_3870763_+	NA|471aa|up_9|NZ_CP007265.1_3851108_3852521_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP007265.1_3853077_3853287_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP007265.1_3853741_3854368_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP007265.1_3854388_3856491_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP007265.1_3856503_3857142_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP007265.1_3857205_3857874_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP007265.1_3857870_3858656_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP007265.1_3858659_3859472_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP007265.1_3859483_3861088_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP007265.1_3861213_3861519_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP007265.1_3862091_3863348_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP007265.1_3863388_3864762_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP007265.1_3864976_3865618_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP007265.1_3865657_3866806_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP007265.1_3867096_3868308_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP007265.1_3868420_3869353_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP007265.1_3869349_3870375_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP007265.1_3870673_3870763_+	NA	NA|390aa|down_8|NZ_CP007265.1_3870928_3872098_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP007265.1_3872332_3872914_-	PRK10543, PRK10543, superoxide dismutase [Fe]
