assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	1	295780-295861	1	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	295804-295837	NZ_CP007454.1_2541772-2541739	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|38aa|down_1|NZ_CP007454.1_296844_296958_-	NA|417aa|up_9|NZ_CP007454.1_286208_287459_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP007454.1_287564_288872_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP007454.1_288969_289731_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP007454.1_290058_290910_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP007454.1_291143_291338_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP007454.1_291691_292513_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP007454.1_292530_293226_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP007454.1_293218_294244_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP007454.1_294493_294790_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP007454.1_294782_295169_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP007454.1_295964_296843_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP007454.1_296844_296958_-	NA	NA|127aa|down_2|NZ_CP007454.1_297021_297402_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP007454.1_297559_297916_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP007454.1_298059_298380_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP007454.1_298530_299070_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP007454.1_299152_299869_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP007454.1_300016_300439_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP007454.1_300837_301332_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP007454.1_301486_302104_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	2	344718-344796	2	CRISPRCasFinder	no	cas3	cas3,WYL,RT,csa3,DEDDh,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	2	344742-344772|344742-344772	NZ_CP007454.1_857908-857878|NZ_CP007454.1_857963-857933	NA	1	1	Unclear	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|36aa|down_5|NZ_CP007454.1_352274_352382_-	NA|301aa|up_9|NZ_CP007454.1_333599_334502_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP007454.1_334744_335332_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP007454.1_335895_336840_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP007454.1_336950_337946_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP007454.1_337942_338854_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP007454.1_339739_340675_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP007454.1_340741_342181_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP007454.1_342188_342674_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP007454.1_342681_343521_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP007454.1_343526_344459_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP007454.1_345122_347969_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP007454.1_347976_349962_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP007454.1_350230_350467_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP007454.1_350463_351114_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP007454.1_351287_352127_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP007454.1_352274_352382_-	NA	NA|370aa|down_6|NZ_CP007454.1_352535_353646_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|440aa|down_7|NZ_CP007454.1_354020_355340_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|844aa|down_8|NZ_CP007454.1_355480_358012_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP007454.1_358425_358998_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	3	742727-742829	3	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|179aa|up_7|NZ_CP007454.1_734345_734882_+,NA|221aa|up_1|NZ_CP007454.1_740973_741636_+,NA|33aa|down_0|NZ_CP007454.1_743504_743603_-,NA|128aa|down_6|NZ_CP007454.1_749850_750234_+,NA|70aa|down_8|NZ_CP007454.1_751058_751268_+	NA|91aa|up_9|NZ_CP007454.1_732578_732851_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP007454.1_733249_733954_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP007454.1_734345_734882_+	NA	NA|514aa|up_6|NZ_CP007454.1_734994_736536_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP007454.1_736560_738027_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP007454.1_738064_739333_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP007454.1_739332_739911_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP007454.1_740423_740831_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP007454.1_740973_741636_+	NA	NA|319aa|up_0|NZ_CP007454.1_741753_742710_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP007454.1_743504_743603_-	NA	NA|463aa|down_1|NZ_CP007454.1_743687_745076_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP007454.1_745155_745911_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP007454.1_746402_746972_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP007454.1_746987_748511_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP007454.1_748954_749581_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP007454.1_749850_750234_+	NA	NA|194aa|down_7|NZ_CP007454.1_750299_750881_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP007454.1_751058_751268_+	NA	NA|84aa|down_9|NZ_CP007454.1_751306_751558_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	4	1355349-1355482	1	PILER-CR	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	2	2	1355366-1355411|1355429-1355465	NZ_CP007454.1_1351716-1351761|NZ_CP007454.1_1351779-1351815	NA	2	2	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|67aa|up_1|NZ_CP007454.1_1348892_1349093_+,NA|78aa|down_5|NZ_CP007454.1_1364567_1364801_+,NA|103aa|down_6|NZ_CP007454.1_1364908_1365217_-,NA|89aa|down_7|NZ_CP007454.1_1365360_1365627_-	NA|426aa|up_9|NZ_CP007454.1_1338889_1340167_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP007454.1_1340643_1342467_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP007454.1_1342605_1343022_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP007454.1_1343252_1343945_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP007454.1_1344109_1344874_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP007454.1_1345026_1345707_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP007454.1_1345730_1347284_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP007454.1_1347400_1348759_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP007454.1_1348892_1349093_+	NA	NA|1039aa|up_0|NZ_CP007454.1_1349227_1352344_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP007454.1_1356090_1356957_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP007454.1_1357167_1357911_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP007454.1_1358234_1358591_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1372aa|down_3|NZ_CP007454.1_1358895_1363011_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP007454.1_1363394_1364471_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP007454.1_1364567_1364801_+	NA	NA|103aa|down_6|NZ_CP007454.1_1364908_1365217_-	NA	NA|89aa|down_7|NZ_CP007454.1_1365360_1365627_-	NA	NA|603aa|down_8|NZ_CP007454.1_1365910_1367719_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP007454.1_1367850_1368243_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	5	1431664-1431742	4	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	4	1431687-1431719|1431687-1431719|1431687-1431719|1431687-1431719	NZ_CP007454.1_295492-295524|NZ_CP007454.1_331963-331995|NZ_CP007454.1_332019-332051|NZ_CP007454.1_1821982-1821950	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|220aa|up_3|NZ_CP007454.1_1428588_1429248_-,NA|36aa|up_0|NZ_CP007454.1_1431237_1431345_+,NA	NA|693aa|up_9|NZ_CP007454.1_1421050_1423129_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP007454.1_1423266_1424676_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP007454.1_1424961_1425768_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP007454.1_1425830_1426487_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP007454.1_1426599_1427073_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP007454.1_1427195_1428407_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP007454.1_1428588_1429248_-	NA	NA|381aa|up_2|NZ_CP007454.1_1429307_1430450_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP007454.1_1430717_1431104_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP007454.1_1431237_1431345_+	NA	NA|588aa|down_0|NZ_CP007454.1_1432047_1433811_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP007454.1_1433835_1435569_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP007454.1_1436021_1436708_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP007454.1_1436685_1438044_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP007454.1_1438045_1439053_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP007454.1_1439030_1440146_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP007454.1_1440156_1440849_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP007454.1_1440859_1441327_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP007454.1_1441378_1442356_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP007454.1_1442357_1443305_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	6	1596347-1596427	5	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	14	1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402|1596372-1596402	NZ_CP007454.1_332023-332053|NZ_CP007454.1_85692-85722|NZ_CP007454.1_295496-295526|NZ_CP007454.1_331967-331997|NZ_CP007454.1_514197-514167|NZ_CP007454.1_781566-781536|NZ_CP007454.1_1079828-1079858|NZ_CP007454.1_1607173-1607203|NZ_CP007454.1_1948374-1948404|NZ_CP007454.1_2257611-2257581|NZ_CP007454.1_2453235-2453265|NZ_CP007454.1_2453351-2453381|NZ_CP007454.1_2541813-2541783|NZ_CP007454.1_2747845-2747815	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|62aa|down_0|NZ_CP007454.1_1596468_1596654_-,NA|84aa|down_5|NZ_CP007454.1_1599793_1600045_-,NA|106aa|down_8|NZ_CP007454.1_1605166_1605484_-,NA|55aa|down_9|NZ_CP007454.1_1605728_1605893_-	NA|202aa|up_9|NZ_CP007454.1_1589239_1589845_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP007454.1_1590014_1591019_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP007454.1_1591049_1591556_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP007454.1_1591557_1592052_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP007454.1_1592114_1593374_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP007454.1_1593370_1593856_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP007454.1_1593869_1594316_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP007454.1_1594321_1594555_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP007454.1_1594561_1595161_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP007454.1_1595180_1596203_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP007454.1_1596468_1596654_-	NA	NA|117aa|down_1|NZ_CP007454.1_1596779_1597130_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP007454.1_1597231_1598443_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP007454.1_1598435_1598876_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP007454.1_1599037_1599802_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP007454.1_1599793_1600045_-	NA	NA|422aa|down_6|NZ_CP007454.1_1600433_1601699_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP007454.1_1601815_1604983_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP007454.1_1605166_1605484_-	NA	NA|55aa|down_9|NZ_CP007454.1_1605728_1605893_-	NA
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	7	1704386-1704471	6	CRISPRCasFinder	no	csa3	cas3,WYL,RT,csa3,DEDDh,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|53aa|down_7|NZ_CP007454.1_1715433_1715592_-,NA|35aa|down_8|NZ_CP007454.1_1716271_1716376_+,NA|364aa|down_9|NZ_CP007454.1_1716808_1717900_-	NA|396aa|up_9|NZ_CP007454.1_1679630_1680818_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP007454.1_1680836_1681520_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP007454.1_1681696_1683040_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP007454.1_1683138_1683612_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP007454.1_1683934_1685377_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP007454.1_1685524_1686589_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP007454.1_1692829_1693738_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP007454.1_1693926_1694736_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP007454.1_1694737_1695670_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP007454.1_1695696_1697052_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP007454.1_1705093_1706200_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP007454.1_1706199_1706634_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP007454.1_1706645_1708778_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP007454.1_1708812_1710351_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP007454.1_1711031_1712837_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP007454.1_1713068_1713851_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP007454.1_1713918_1714776_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP007454.1_1715433_1715592_-	NA	NA|35aa|down_8|NZ_CP007454.1_1716271_1716376_+	NA	NA|364aa|down_9|NZ_CP007454.1_1716808_1717900_-	NA
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	8	1716711-1716792	7	CRISPRCasFinder	no	csa3	cas3,WYL,RT,csa3,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA|53aa|up_1|NZ_CP007454.1_1715433_1715592_-,NA|35aa|up_0|NZ_CP007454.1_1716271_1716376_+,NA|364aa|down_0|NZ_CP007454.1_1716808_1717900_-,NA|77aa|down_5|NZ_CP007454.1_1721686_1721917_+	NA|2482aa|up_9|NZ_CP007454.1_1697329_1704775_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP007454.1_1705093_1706200_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP007454.1_1706199_1706634_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP007454.1_1706645_1708778_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP007454.1_1708812_1710351_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP007454.1_1711031_1712837_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP007454.1_1713068_1713851_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP007454.1_1713918_1714776_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP007454.1_1715433_1715592_-	NA	NA|35aa|up_0|NZ_CP007454.1_1716271_1716376_+	NA	NA|364aa|down_0|NZ_CP007454.1_1716808_1717900_-	NA	NA|326aa|down_1|NZ_CP007454.1_1718165_1719143_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP007454.1_1719144_1719465_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP007454.1_1719616_1720282_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP007454.1_1720717_1721656_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP007454.1_1721686_1721917_+	NA	NA|458aa|down_6|NZ_CP007454.1_1722588_1723962_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP007454.1_1724418_1724832_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP007454.1_1725031_1725475_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP007454.1_1725595_1726306_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	9	1845968-1846049	8	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	1845992-1846025|1845992-1846025|1845992-1846025|1845992-1846025|1845992-1846025	NZ_CP007454.1_344764-344797|NZ_CP007454.1_2753446-2753413|NZ_CP007454.1_2152308-2152275|NZ_CP007454.1_1157509-1157542|NZ_CP007454.1_2537365-2537398	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA|205aa|down_4|NZ_CP007454.1_1852285_1852900_+,NA|49aa|down_5|NZ_CP007454.1_1852896_1853043_-,NA|61aa|down_6|NZ_CP007454.1_1853078_1853261_-,NA|87aa|down_9|NZ_CP007454.1_1854631_1854892_+	NA|48aa|up_9|NZ_CP007454.1_1836152_1836296_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP007454.1_1836298_1836862_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP007454.1_1837097_1837232_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP007454.1_1837831_1838617_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP007454.1_1838977_1839604_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP007454.1_1839800_1841060_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP007454.1_1841084_1841828_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP007454.1_1842002_1842287_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP007454.1_1842362_1843979_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP007454.1_1844518_1845826_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP007454.1_1846269_1847493_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP007454.1_1847928_1848984_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP007454.1_1849005_1850022_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP007454.1_1851140_1852178_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|205aa|down_4|NZ_CP007454.1_1852285_1852900_+	NA	NA|49aa|down_5|NZ_CP007454.1_1852896_1853043_-	NA	NA|61aa|down_6|NZ_CP007454.1_1853078_1853261_-	NA	NA|257aa|down_7|NZ_CP007454.1_1853460_1854231_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|75aa|down_8|NZ_CP007454.1_1854389_1854614_+	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|87aa|down_9|NZ_CP007454.1_1854631_1854892_+	NA
GCF_000597965.1_ASM59796v1	NZ_CP007454	Staphylococcus aureus strain 502A isolate RN6607 chromosome, complete genome	10	2272191-2272275	9	CRISPRCasFinder	no		cas3,WYL,RT,csa3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	2272217-2272249|2272217-2272249|2272217-2272249	NZ_CP007454.1_339206-339238|NZ_CP007454.1_981080-981048|NZ_CP007454.1_2541771-2541739	NA	1	1	Orphan	cas3,WYL,RT,csa3,DEDDh,DinG	NA,NA	NA|190aa|up_9|NZ_CP007454.1_2262820_2263390_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP007454.1_2263379_2263964_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP007454.1_2263964_2264318_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP007454.1_2264320_2265037_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP007454.1_2265076_2265763_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP007454.1_2265854_2266316_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP007454.1_2266374_2268522_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP007454.1_2268578_2269553_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP007454.1_2269597_2269849_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP007454.1_2270194_2272018_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP007454.1_2272583_2273708_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP007454.1_2273808_2274786_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP007454.1_2274817_2275444_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP007454.1_2275512_2277345_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP007454.1_2277480_2278620_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP007454.1_2278623_2279562_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP007454.1_2279563_2280316_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP007454.1_2280322_2281669_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP007454.1_2281961_2282138_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP007454.1_2282381_2283065_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
