assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000626295.1_ASM62629v1	NZ_CP007250	Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110355 chromosome, complete genome	1	954495-954670	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GTAGCGCCGCAGCCGCAGTATCAGCAGCCGCAGCAACCGGTAGCGCCGCAGCC	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|128aa|up_5|NZ_CP007250.1_945405_945789_-,NA|109aa|down_9|NZ_CP007250.1_968387_968714_-	NA|226aa|up_9|NZ_CP007250.1_942591_943269_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|287aa|up_8|NZ_CP007250.1_943288_944149_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|304aa|up_7|NZ_CP007250.1_944257_945169_+	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|73aa|up_6|NZ_CP007250.1_945259_945478_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|128aa|up_5|NZ_CP007250.1_945405_945789_-	NA	NA|235aa|up_4|NZ_CP007250.1_945789_946494_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|up_3|NZ_CP007250.1_946538_948260_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|up_2|NZ_CP007250.1_948260_950027_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|323aa|up_1|NZ_CP007250.1_950140_951109_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|up_0|NZ_CP007250.1_951654_952149_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|204aa|down_0|NZ_CP007250.1_956352_956964_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_1|NZ_CP007250.1_956973_958317_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_2|NZ_CP007250.1_958575_959868_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|815aa|down_3|NZ_CP007250.1_960104_962549_+	PRK14990, PRK14990, anaerobic dimethyl sulfoxide reductase subunit A; Provisional	NA|206aa|down_4|NZ_CP007250.1_962559_963177_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|288aa|down_5|NZ_CP007250.1_963178_964042_+	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC)	NA|383aa|down_6|NZ_CP007250.1_964391_965540_+	PRK03633, PRK03633, putative MFS family transporter protein; Provisional	NA|474aa|down_7|NZ_CP007250.1_965757_967179_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|259aa|down_8|NZ_CP007250.1_967471_968248_-	PRK11145, pflA, pyruvate formate lyase 1-activating protein	NA|109aa|down_9|NZ_CP007250.1_968387_968714_-	NA
GCF_000626295.1_ASM62629v1	NZ_CP007250	Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110355 chromosome, complete genome	2	2952972-2953549	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP007250.1_2944838_2945600_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP007250.1_2945580_2946630_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP007250.1_2946626_2947106_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP007250.1_2947105_2947816_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP007250.1_2947834_2948146_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP007250.1_2948336_2948693_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP007250.1_2948710_2949316_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP007250.1_2949302_2950742_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP007250.1_2950751_2951660_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP007250.1_2951910_2952957_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP007250.1_2953645_2953939_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP007250.1_2953938_2954859_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP007250.1_2954855_2955506_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP007250.1_2955487_2956234_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP007250.1_2956244_2957303_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|down_5|NZ_CP007250.1_2957316_2957871_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP007250.1_2957867_2959424_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP007250.1_2959435_2962099_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP007250.1_2962542_2963496_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP007250.1_2963583_2964318_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000626295.1_ASM62629v1	NZ_CP007250	Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110355 chromosome, complete genome	3	2969701-2970462	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CNGTTTATCCCCGCTGGCGCGGGGAACAC,GTTTATCCCCGCTGGCGCGGGGAACAC	29,29,27	0	0	NA	NA	I-E:I-E:I-E	12,12,11	12	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	cas7|353aa|up_9|NZ_CP007250.1_2956244_2957303_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|up_8|NZ_CP007250.1_2957316_2957871_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP007250.1_2957867_2959424_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP007250.1_2959435_2962099_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP007250.1_2962542_2963496_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP007250.1_2963583_2964318_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP007250.1_2964419_2966132_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP007250.1_2966131_2967931_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP007250.1_2968354_2968717_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP007250.1_2968804_2969602_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP007250.1_2970758_2971430_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP007250.1_2971565_2972864_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP007250.1_2972946_2974584_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP007250.1_2974811_2975612_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP007250.1_2976219_2976807_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP007250.1_2976886_2979586_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP007250.1_2979598_2980372_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP007250.1_2980391_2980898_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP007250.1_2980912_2981383_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP007250.1_2981379_2981916_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
