The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	410207	471052	2810186	protease,tRNA,transposase	Staphylococcus_phage(87.5%)	57	NA	NA
WP_001808146.1|410207_411527_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|412019_413081_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|413338_414796_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000590809.1|414788_415511_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000379978.1|415661_416789_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|416793_417264_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|417422_418022_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|418046_418199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|418975_419371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|419566_420952_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|421414_422236_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|422398_423511_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|423532_424156_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|424511_424976_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|425154_426279_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|426347_426692_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|427074_427173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|427463_428660_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|428649_431586_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|431582_432524_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|432644_433607_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|433811_434369_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|435101_435467_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|435608_436031_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|436164_436905_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|436897_438121_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|438244_438748_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|438910_439021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|439010_440048_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|440105_441029_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|441052_442453_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|442775_443330_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206350.1|445786_446575_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_001790220.1|446587_447127_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|447926_448862_+	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|448863_449847_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_047212565.1|450088_450253_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_001808146.1|450278_451598_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000416756.1|452489_452633_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092604.1|452697_455691_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.2	0.0e+00
WP_000566316.1|455683_456928_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.1e-237
WP_000504439.1|456943_457462_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|457471_458845_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|458867_459560_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|459556_460318_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|460314_461013_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|461486_462053_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039423.1|463016_463733_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
WP_001039447.1|463857_464580_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|464637_465357_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|465477_466197_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|466145_466253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|466354_467071_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|467221_467941_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|468005_468140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028659.1|468303_469860_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_000072576.1|469852_471052_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
>prophage 2
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	477782	513032	2810186	protease,transposase	Staphylococcus_phage(90.91%)	40	NA	NA
WP_001549059.1|477782_477926_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|478661_479045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|479055_479232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|479233_479419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|479532_480174_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|480391_480943_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|481040_481385_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000669046.1|481425_482052_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000070653.1|482127_483123_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|483203_483854_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|484156_484612_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|484770_486249_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|486253_487255_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|487251_487509_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|487574_488048_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|488052_488799_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000093392.1|489173_489659_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000109906.1|489794_491387_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|491757_492951_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|493075_493984_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|494195_495029_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623474.1|497111_497465_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200542.1|497461_497827_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|498082_498385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|498644_499358_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|499797_500433_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|500728_501172_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|501158_501602_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|501714_502185_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|502383_502608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|502883_503738_+	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|504032_504428_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|504445_505738_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|505737_506052_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|506574_508077_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|508557_509601_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493892.1|509607_510240_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|510250_511432_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|511444_511909_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|512030_513032_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 3
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	516192	528921	2810186	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|516192_516756_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|516752_517706_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|517815_518997_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001549041.1|519284_521702_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|521723_522035_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050554.1|522360_528921_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 4
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	654749	663792	2810186	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|654749_655754_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|655755_656781_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|656803_657943_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|657961_658222_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|658496_660776_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|660978_663252_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|663273_663792_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	732929	741241	2810186	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|732929_734729_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|734952_736059_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624561.1|736189_736867_+|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
WP_000683931.1|736869_737970_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|738083_739430_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|739439_740330_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|740455_741241_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1293122	1301595	2810186		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|1293122_1293689_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|1293691_1294720_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|1294712_1296197_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|1296175_1298365_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|1298357_1299029_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1299030_1299294_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|1299293_1299998_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|1300001_1301126_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|1301112_1301595_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 7
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1321582	1369167	2810186	bacteriocin,protease	Enterococcus_phage(20.0%)	48	NA	NA
WP_001088780.1|1321582_1322764_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|1322801_1323131_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1323369_1324191_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150195.1|1324183_1324987_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|1324973_1326647_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190623.1|1326633_1327995_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|1328176_1329115_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620953.1|1329166_1329718_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|1329882_1330098_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_001790177.1|1330161_1330293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1330338_1331298_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1331774_1332131_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|1332219_1333701_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|1333706_1333994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795544.1|1334272_1334563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571178.1|1334650_1335292_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000668623.1|1335288_1335609_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|1335611_1337576_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_078061421.1|1337619_1337892_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|1337901_1338003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|1338920_1339523_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1339537_1339714_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|1339912_1340899_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1340979_1341198_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1341407_1341977_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|1342463_1343975_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|1344113_1345472_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000455278.1|1345488_1347813_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1348031_1348835_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049959.1|1349136_1350699_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_001795833.1|1350698_1350959_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340118.1|1350942_1352424_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|1352856_1354032_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154222.1|1354009_1355200_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600392.1|1355312_1355822_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001288681.1|1356015_1356774_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570699.1|1356915_1358484_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|1358825_1359911_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|1360105_1360876_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395153.1|1361153_1362998_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_038412216.1|1363007_1364393_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669939.1|1364413_1365268_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|1365264_1366074_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|1366090_1366726_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|1366742_1367090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|1367275_1367869_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214065.1|1367972_1368338_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896699.1|1368360_1369167_+|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
>prophage 8
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1462513	1483722	2810186	integrase,coat,terminase,capsid	Staphylococcus_phage(77.78%)	33	1465235:1465251	1481170:1481186
WP_000168845.1|1462513_1463275_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_001183858.1|1463602_1464454_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000752917.1|1464686_1464881_-	CsbD family protein	NA	NA	NA	NA	NA
1465235:1465251	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_001286805.1|1465711_1465897_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139424.1|1465898_1466009_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
WP_001795626.1|1466079_1466232_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_001035631.1|1466604_1467162_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_000278085.1|1467239_1468040_-	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001293067.1|1468347_1468917_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000358777.1|1468913_1469255_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_000771368.1|1469257_1469785_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448101.1|1469835_1470054_-|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000846285.1|1470071_1470650_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190615.1|1470661_1471003_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_001019764.1|1471519_1472161_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_000998181.1|1472157_1472442_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001039168.1|1472443_1472806_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000390455.1|1473106_1474564_-	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
WP_001002732.1|1474580_1475450_-	primase alpha helix C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_001103942.1|1475513_1475834_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001058486.1|1475836_1476046_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_000784875.1|1476038_1476185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000091731.1|1476196_1476469_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000243851.1|1476461_1476725_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_001260004.1|1476917_1477250_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000281657.1|1477261_1477720_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001228759.1|1477736_1478168_+	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_001033316.1|1478237_1478966_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_000733775.1|1478989_1479718_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_000266157.1|1479806_1481027_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000732326.1|1481169_1481991_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1481170:1481186	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_000520233.1|1482008_1482704_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000571218.1|1482696_1483722_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 9
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1562208	1576995	2810186		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|1562208_1562970_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|1562966_1563923_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1563909_1564881_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1564919_1565075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1565588_1566560_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1566677_1568783_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1568745_1569144_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1569944_1570811_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1570830_1571331_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1571671_1573177_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|1573254_1573356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|1573446_1574364_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197271.1|1575043_1575586_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1575936_1576995_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 10
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1588967	1596787	2810186		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|1588967_1590119_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|1590102_1590696_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1591046_1591715_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1591716_1592136_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1592139_1592853_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|1592951_1593536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|1593815_1594256_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1594597_1595071_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1595045_1595732_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|1595731_1596787_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 11
NZ_CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1987002	2029734	2810186	portal,terminase,integrase,plate,tail,protease,holin,head,capsid	Staphylococcus_phage(87.14%)	70	1986252:1986269	2029828:2029845
1986252:1986269	attL	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
WP_000930258.1|1987002_1988457_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
WP_000339146.1|1988468_1988771_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1988906_1989206_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_001125229.1|1989251_1989416_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	98.1	2.5e-23
WP_001166599.1|1989408_1989798_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067122.1|1989797_1991264_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.4	2.9e-272
WP_000429557.1|1991263_1993174_-	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	99.8	0.0e+00
WP_000179858.1|1993189_1993480_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1993479_1995063_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1995071_1995896_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003428.1|1995895_2002096_-|tail	phage tail tape measure protein	tail	Q4ZCL0	Staphylococcus_virus	99.6	0.0e+00
WP_000438833.1|2002109_2002268_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|2002309_2002660_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|2002717_2003173_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|2003264_2003906_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|2003940_2004336_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|2004336_2004738_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|2004734_2005067_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|2005078_2005357_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|2005425_2006589_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|2006600_2007374_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100669.1|2007357_2008596_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000153555.1|2008600_2010292_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|2010281_2010587_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|2010715_2011030_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513702.1|2011186_2011624_-	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
WP_000265258.1|2011943_2012144_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000166078.1|2012211_2012364_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	98.0	4.4e-19
WP_001072795.1|2012356_2012560_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000141183.1|2012556_2012751_-	hypothetical protein	NA	A0A0N7E0T8	Staphylococcus_phage	98.4	1.0e-28
WP_000195770.1|2012747_2012954_-	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	95.6	6.0e-19
WP_000185654.1|2012990_2013533_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_001065023.1|2013537_2013774_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|2013766_2014075_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|2014071_2014419_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695759.1|2014415_2014817_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
WP_000693987.1|2014819_2015026_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_000132205.1|2015039_2015282_-	hypothetical protein	NA	A0A0N7E0T2	Staphylococcus_phage	100.0	2.5e-40
WP_000029384.1|2015285_2015642_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	97.5	2.1e-59
WP_000772916.1|2015653_2015911_-	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_001187232.1|2015911_2016097_-	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	96.7	1.2e-26
WP_000049810.1|2016101_2016506_-	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
WP_000451862.1|2016502_2016928_-	DNA N-6-adenine-methyltransferase	NA	Q4ZAC6	Staphylococcus_virus	100.0	8.0e-82
WP_001123688.1|2016937_2017159_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001095146.1|2017161_2017377_-	hypothetical protein	NA	B7T0B0	Staphylococcus_virus	95.8	1.2e-33
WP_001106168.1|2017373_2018615_-	AAA family ATPase	NA	C8CGZ3	Staphylococcus_phage	100.0	2.6e-229
WP_001132238.1|2018611_2018968_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	98.3	6.9e-63
WP_000504976.1|2018967_2019768_-	phage replisome organizer N-terminal domain-containing protein	NA	Q8SDW2	Staphylococcus_phage	98.5	8.7e-106
WP_001124444.1|2019739_2020435_-	hypothetical protein	NA	A0A0E3XBQ6	Staphylococcus_phage	98.7	9.5e-133
WP_000934777.1|2020448_2020868_-	single-stranded DNA-binding protein	NA	Q4ZA54	Staphylococcus_virus	99.3	5.3e-62
WP_000139722.1|2020867_2021491_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	99.0	5.7e-113
WP_000815401.1|2021483_2021705_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_001556704.1|2021714_2021975_-	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_001097093.1|2021979_2022297_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	95.8	3.6e-31
WP_001285962.1|2022386_2022548_-	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	100.0	8.6e-21
WP_001124196.1|2022560_2022824_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	98.9	7.4e-46
WP_000801109.1|2022878_2023130_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.9e-38
WP_000389907.1|2023107_2023299_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	98.4	1.1e-25
WP_000773060.1|2023346_2023727_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	99.2	3.8e-67
WP_031903992.1|2023713_2023911_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	95.4	8.6e-23
WP_001128433.1|2023967_2024333_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|2024301_2024547_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000187184.1|2024586_2024811_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001148570.1|2024811_2025603_-	phage antirepressor KilAC domain-containing protein	NA	A0A0E3T9K2	Staphylococcus_phage	99.6	4.2e-145
WP_001153965.1|2025759_2026068_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001198674.1|2026082_2026301_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	98.6	8.3e-35
WP_000358220.1|2026442_2027162_+	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
WP_000705240.1|2027361_2027544_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001582614.1|2027621_2028335_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	99.6	2.5e-128
WP_000264187.1|2028528_2029734_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	100.0	5.0e-222
2029828:2029845	attR	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
