assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000632985.1_ASM63298v1	NZ_CP007481	Neorickettsia helminthoeca str. Oregon, complete genome	1	37119-37236	1	CRISPRCasFinder	no		DEDDh	Orphan	CCAAAATTAAGTATTCCAATGAGAAGGTAAA	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA,NA|842aa|down_8|NZ_CP007481.1_46701_49227_-,NA|72aa|down_9|NZ_CP007481.1_49515_49731_+	NA|217aa|up_9|NZ_CP007481.1_29321_29972_-	TIGR00697, Uncharacterized_protein_HI_0862, conserved hypothetical integral membrane protein	NA|323aa|up_8|NZ_CP007481.1_30308_31277_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|102aa|up_7|NZ_CP007481.1_31574_31880_-	PRK07375, PRK07375, Na+/H+ antiporter subunit C	NA|147aa|up_6|NZ_CP007481.1_31973_32414_-	PRK12508, PRK12508, Na(+)/H(+) antiporter subunit B	NA|181aa|up_5|NZ_CP007481.1_32403_32946_-	PRK12504, PRK12504, DUF4040 domain-containing protein	NA|99aa|up_4|NZ_CP007481.1_32972_33269_-	PRK12670, PRK12670, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|233aa|up_3|NZ_CP007481.1_33458_34157_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|100aa|up_2|NZ_CP007481.1_34659_34959_+	pfam13744, HTH_37, Helix-turn-helix domain	NA|129aa|up_1|NZ_CP007481.1_35010_35397_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|305aa|up_0|NZ_CP007481.1_35429_36344_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|585aa|down_0|NZ_CP007481.1_37622_39377_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|267aa|down_1|NZ_CP007481.1_39684_40485_+	PRK08159, PRK08159, enoyl-[acyl-carrier-protein] reductase FabI	NA|67aa|down_2|NZ_CP007481.1_40519_40720_-	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|171aa|down_3|NZ_CP007481.1_40839_41352_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|128aa|down_4|NZ_CP007481.1_43231_43615_+	TIGR02970, Succinate_dehydrogenase_cytochrome_b556_subunit, succinate dehydrogenase, cytochrome b556 subunit	NA|110aa|down_5|NZ_CP007481.1_43611_43941_+	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E	NA|571aa|down_6|NZ_CP007481.1_43950_45663_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|238aa|down_7|NZ_CP007481.1_45751_46465_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|842aa|down_8|NZ_CP007481.1_46701_49227_-	NA	NA|72aa|down_9|NZ_CP007481.1_49515_49731_+	NA
GCF_000632985.1_ASM63298v1	NZ_CP007481	Neorickettsia helminthoeca str. Oregon, complete genome	2	369965-370199	1	CRT	no		DEDDh	Orphan	GCTACTTCAGCTGATGGTATAGGCTCGGTTGCTT	34	3	5	369999-370027|369999-370027|370062-370102|370137-370165|370137-370165	NZ_CP007481.1_369744-369772|NZ_CP007481.1_369807-369835|NZ_CP007481.1_370200-370240|NZ_CP007481.1_369744-369772|NZ_CP007481.1_369807-369835	NA	3	3	Orphan	DEDDh	NA|99aa|up_6|NZ_CP007481.1_360121_360418_+,NA	NA|378aa|up_9|NZ_CP007481.1_356569_357703_+	pfam00162, PGK, Phosphoglycerate kinase	NA|370aa|up_8|NZ_CP007481.1_357807_358917_-	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|304aa|up_7|NZ_CP007481.1_358919_359831_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|99aa|up_6|NZ_CP007481.1_360121_360418_+	NA	NA|236aa|up_5|NZ_CP007481.1_360414_361122_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|391aa|up_4|NZ_CP007481.1_361193_362366_+	cd01948, EAL, EAL domain	NA|385aa|up_3|NZ_CP007481.1_362362_363517_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|225aa|up_2|NZ_CP007481.1_364842_365517_+	cd05233, SDR_c, classical (c) SDRs	NA|308aa|up_1|NZ_CP007481.1_365560_366484_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|241aa|up_0|NZ_CP007481.1_366712_367435_-	pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase domain	NA|144aa|down_0|NZ_CP007481.1_370657_371089_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|417aa|down_1|NZ_CP007481.1_371092_372343_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|280aa|down_2|NZ_CP007481.1_372349_373189_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|196aa|down_3|NZ_CP007481.1_373239_373827_+	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family	NA|666aa|down_4|NZ_CP007481.1_374053_376051_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|129aa|down_5|NZ_CP007481.1_376295_376682_-	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein	NA|386aa|down_6|NZ_CP007481.1_376880_378038_+	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|239aa|down_7|NZ_CP007481.1_378123_378840_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|156aa|down_8|NZ_CP007481.1_379205_379673_+	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown]	NA|118aa|down_9|NZ_CP007481.1_380070_380424_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]
GCF_000632985.1_ASM63298v1	NZ_CP007481	Neorickettsia helminthoeca str. Oregon, complete genome	3	418026-418307	1	PILER-CR	no		DEDDh	Orphan	TCCAGAAGCAATAACTGAAGC	21	5	7	418047-418076|418098-418130|418098-418130|418152-418181|418203-418235|418203-418235|418257-418286	NZ_CP007481.1_417942-417971|NZ_CP007481.1_417993-418025|NZ_CP007481.1_418308-418340|NZ_CP007481.1_417942-417971|NZ_CP007481.1_417993-418025|NZ_CP007481.1_418308-418340|NZ_CP007481.1_417942-417971	NA	5	5	Orphan	DEDDh	NA|1113aa|up_1|NZ_CP007481.1_411625_414964_+,NA	NA|264aa|up_9|NZ_CP007481.1_403649_404441_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|164aa|up_8|NZ_CP007481.1_404539_405031_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|390aa|up_7|NZ_CP007481.1_405114_406284_+	cd18079, S-AdoMet_synt, S-adenosylmethionine synthetase	NA|137aa|up_6|NZ_CP007481.1_406422_406833_-	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|104aa|up_5|NZ_CP007481.1_406853_407165_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|390aa|up_4|NZ_CP007481.1_407398_408568_-	TIGR02397, DNA_polymerase_III_subunit_gamma, DNA polymerase III, subunit gamma and tau	NA|220aa|up_3|NZ_CP007481.1_408677_409337_-	TIGR04305, TENA/THI-4_family_protein, putative folate metabolism protein, CADD family	NA|622aa|up_2|NZ_CP007481.1_409527_411393_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|1113aa|up_1|NZ_CP007481.1_411625_414964_+	NA	NA|831aa|up_0|NZ_CP007481.1_414888_417381_+	sd00045, ANK, ankyrin repeats	NA|468aa|down_0|NZ_CP007481.1_419414_420818_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|816aa|down_1|NZ_CP007481.1_420820_423268_-	pfam05170, AsmA, AsmA family	NA|360aa|down_2|NZ_CP007481.1_423467_424547_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|665aa|down_3|NZ_CP007481.1_424543_426538_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|118aa|down_4|NZ_CP007481.1_426674_427028_-	smart00905, FolB, Dihydroneopterin aldolase	NA|368aa|down_5|NZ_CP007481.1_426975_428079_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|79aa|down_6|NZ_CP007481.1_428097_428334_-	PRK00528, rpmE, 50S ribosomal protein L31; Reviewed	NA|250aa|down_7|NZ_CP007481.1_428432_429182_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|184aa|down_8|NZ_CP007481.1_429175_429727_-	pfam06242, DUF1013, Protein of unknown function (DUF1013)	NA|809aa|down_9|NZ_CP007481.1_429839_432266_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated
GCF_000632985.1_ASM63298v1	NZ_CP007481	Neorickettsia helminthoeca str. Oregon, complete genome	4	459115-459254	2	CRISPRCasFinder	no		DEDDh	Orphan	GCTATGCCCGGAATACAGAAAGGCGCTAAATCTACTGTAGT	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|92aa|up_9|NZ_CP007481.1_446039_446315_+,NA|312aa|up_8|NZ_CP007481.1_446473_447409_-,NA|519aa|down_1|NZ_CP007481.1_460288_461845_+	NA|92aa|up_9|NZ_CP007481.1_446039_446315_+	NA	NA|312aa|up_8|NZ_CP007481.1_446473_447409_-	NA	NA|437aa|up_7|NZ_CP007481.1_447401_448712_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|159aa|up_6|NZ_CP007481.1_448708_449185_-	pfam01899, MNHE, Na+/H+ ion antiporter subunit	NA|321aa|up_5|NZ_CP007481.1_449177_450140_-	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|539aa|up_4|NZ_CP007481.1_450464_452081_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|796aa|up_3|NZ_CP007481.1_452087_454475_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|92aa|up_2|NZ_CP007481.1_454486_454762_+	pfam02033, RBFA, Ribosome-binding factor A	NA|785aa|up_1|NZ_CP007481.1_454751_457106_+	TIGR02786, conserved_hypothetical_protein, double-strand break repair protein AddB, alphaproteobacterial type	NA|481aa|up_0|NZ_CP007481.1_457188_458631_+	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|62aa|down_0|NZ_CP007481.1_459928_460114_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|519aa|down_1|NZ_CP007481.1_460288_461845_+	NA	NA|152aa|down_2|NZ_CP007481.1_461855_462311_-	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|87aa|down_3|NZ_CP007481.1_462307_462568_-	pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12	NA|208aa|down_4|NZ_CP007481.1_462581_463205_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|328aa|down_5|NZ_CP007481.1_463251_464235_-	PRK09354, recA, recombinase A; Provisional	NA|534aa|down_6|NZ_CP007481.1_464432_466034_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|257aa|down_7|NZ_CP007481.1_466443_467214_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|381aa|down_8|NZ_CP007481.1_467654_468797_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|506aa|down_9|NZ_CP007481.1_468943_470461_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed
GCF_000632985.1_ASM63298v1	NZ_CP007481	Neorickettsia helminthoeca str. Oregon, complete genome	5	549905-550017	3	CRISPRCasFinder	no		DEDDh	Orphan	TTTAACAGAAAGAGACAGAAAGCTTATTTGGCATCCCTACAC	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|712aa|up_7|NZ_CP007481.1_537973_540109_+,NA|562aa|up_6|NZ_CP007481.1_540379_542065_+,NA|657aa|up_5|NZ_CP007481.1_542626_544597_+,NA|81aa|down_0|NZ_CP007481.1_551589_551832_+,NA|405aa|down_8|NZ_CP007481.1_559431_560646_-	NA|780aa|up_9|NZ_CP007481.1_534024_536364_-	PRK13208, valS, valyl-tRNA synthetase; Reviewed	NA|368aa|up_8|NZ_CP007481.1_536654_537759_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|712aa|up_7|NZ_CP007481.1_537973_540109_+	NA	NA|562aa|up_6|NZ_CP007481.1_540379_542065_+	NA	NA|657aa|up_5|NZ_CP007481.1_542626_544597_+	NA	NA|324aa|up_4|NZ_CP007481.1_545098_546070_-	TIGR00433, biotin_synthase, biotin synthase	NA|398aa|up_3|NZ_CP007481.1_546202_547396_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|223aa|up_2|NZ_CP007481.1_547437_548106_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|257aa|up_1|NZ_CP007481.1_548306_549077_+	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC	NA|205aa|up_0|NZ_CP007481.1_549163_549778_+	cd03109, DTBS, dethiobiotin synthetase	NA|81aa|down_0|NZ_CP007481.1_551589_551832_+	NA	NA|258aa|down_1|NZ_CP007481.1_552049_552823_+	MTH00154, COX2, cytochrome c oxidase subunit II; Provisional	NA|519aa|down_2|NZ_CP007481.1_552851_554408_+	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|291aa|down_3|NZ_CP007481.1_554449_555322_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|174aa|down_4|NZ_CP007481.1_555339_555861_+	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit	NA|409aa|down_5|NZ_CP007481.1_555853_557080_+	MTH00156, CYTB, cytochrome b; Provisional	NA|257aa|down_6|NZ_CP007481.1_557096_557867_+	pfam02167, Cytochrom_C1, Cytochrome C1 family	NA|502aa|down_7|NZ_CP007481.1_557923_559429_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|405aa|down_8|NZ_CP007481.1_559431_560646_-	NA	NA|228aa|down_9|NZ_CP007481.1_560808_561492_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG
