The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	361696	406644	4933618	holin,terminase,lysis,coat,integrase,protease,portal	Enterobacteria_phage(77.61%)	68	352466:352482	415234:415250
352466:352482	attL	GATATTGAAATTCGCGT	NA	NA	NA	NA
WP_001043675.1|361696_362749_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
WP_001285275.1|363031_364135_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_000893231.1|364146_365397_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
WP_000051897.1|365602_366766_-|integrase	site-specific integrase	integrase	Q76H30	Enterobacteria_phage	100.0	3.7e-230
WP_155675089.1|366995_367136_-	hypothetical protein	NA	A0A0M4QWX3	Salmonella_phage	97.8	4.2e-16
WP_000002104.1|367204_367489_-	ASCH domain-containing protein	NA	Q76H28	Enterobacteria_phage	100.0	1.4e-50
WP_000371199.1|367481_367766_-	DUF4752 family protein	NA	Q76H46	Enterobacteria_phage	100.0	1.6e-49
WP_025617570.1|367765_368410_-	ead/Ea22-like family protein	NA	Q76H45	Enterobacteria_phage	99.5	1.4e-122
WP_071533029.1|368396_368630_-	Lar family restriction alleviation protein	NA	NA	NA	NA	NA
WP_000812203.1|368626_369136_-	hypothetical protein	NA	Q76H44	Enterobacteria_phage	100.0	2.8e-89
WP_001214777.1|369132_369303_-	DUF2737 family protein	NA	Q76H43	Enterobacteria_phage	100.0	1.6e-25
WP_001111291.1|369313_369607_-	DUF2856 family protein	NA	Q76H42	Enterobacteria_phage	100.0	1.4e-48
WP_001253476.1|369653_369938_-	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_001046968.1|369937_370645_-	recombinase	NA	Q76H40	Enterobacteria_phage	100.0	3.1e-139
WP_000902092.1|370641_370785_-	hypothetical protein	NA	A0A2H5BFM6	Salmonella_phage	100.0	6.4e-20
WP_000156731.1|370774_370963_-	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_000141641.1|370943_371102_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.4e-23
WP_000776963.1|371186_371501_-	Superinfection exclusion protein	NA	Q76H37	Enterobacteria_phage	100.0	1.5e-56
WP_000713613.1|371776_372064_-	hypothetical protein	NA	Q76H36	Enterobacteria_phage	100.0	2.7e-49
WP_015974224.1|372097_372742_-	pentapeptide repeat-containing protein	NA	Q76H35	Enterobacteria_phage	100.0	6.5e-51
WP_000213982.1|372825_373020_-	Restriction inhibitor protein ral	NA	Q76H34	Enterobacteria_phage	100.0	1.9e-30
WP_001066179.1|373233_373821_+	superinfection exclusion B family protein	NA	Q76H59	Enterobacteria_phage	100.0	1.4e-100
WP_000216178.1|373833_374136_-	hypothetical protein	NA	Q76H58	Enterobacteria_phage	100.0	9.7e-50
WP_000834175.1|374499_374703_+	hypothetical protein	NA	A0A2H5BFH9	Salmonella_phage	100.0	2.0e-27
WP_001532928.1|374741_375821_-	hypothetical protein	NA	A0A192Y6S0	Salmonella_phage	100.0	1.5e-193
WP_000712403.1|375985_376675_-	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	100.0	1.3e-126
WP_000182204.1|376785_377001_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
WP_001103492.1|377111_377393_+	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
WP_000166961.1|377427_377589_+	hypothetical protein	NA	Q76H53	Enterobacteria_phage	100.0	1.3e-21
WP_000539342.1|377575_378397_+	replication protein	NA	Q76H52	Enterobacteria_phage	100.0	5.2e-154
WP_001248410.1|378393_379770_+	AAA family ATPase	NA	Q76H51	Enterobacteria_phage	100.0	1.9e-254
WP_001036030.1|379766_380036_+	hypothetical protein	NA	Q76H50	Enterobacteria_phage	100.0	4.9e-45
WP_000736891.1|380109_380547_+	recombination protein NinB	NA	Q76H49	Enterobacteria_phage	100.0	4.5e-80
WP_000679703.1|380543_380717_+	hypothetical protein	NA	Q76H74	Enterobacteria_phage	100.0	2.3e-32
WP_000113770.1|380683_380860_+	NinE family protein	NA	Q76H73	Enterobacteria_phage	100.0	1.0e-27
WP_001532927.1|380862_381204_+	DUF2591 family protein	NA	Q76H72	Enterobacteria_phage	100.0	2.1e-64
WP_000950963.1|381196_381373_+	protein ninF	NA	Q76H71	Enterobacteria_phage	100.0	6.7e-27
WP_001108073.1|381365_381977_+	recombination protein NinG	NA	Q76H70	Enterobacteria_phage	100.0	7.9e-99
WP_000036320.1|381973_382198_+	hypothetical protein	NA	Q76H69	Enterobacteria_phage	100.0	6.3e-38
WP_000149882.1|382194_382398_+	phage NinH family protein	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
WP_000219133.1|382378_382558_+	hypothetical protein	NA	Q76H67	Enterobacteria_phage	100.0	1.9e-24
WP_001047566.1|382554_383328_+	antitermination protein	NA	Q76H66	Enterobacteria_phage	100.0	8.1e-133
WP_000286100.1|383758_383962_+|holin	phage holin family protein	holin	I6R0S9	Salmonella_phage	100.0	1.1e-33
WP_024136257.1|383939_384437_+	lysozyme	NA	B8K1G9	Salmonella_phage	100.0	4.5e-92
WP_001687043.1|384433_384901_+|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
WP_000877028.1|385113_385644_+	KilA-N domain-containing protein	NA	Q76H61	Enterobacteria_phage	100.0	1.3e-94
WP_000808099.1|385866_386109_+	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
WP_001140562.1|386112_386502_+	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
WP_001687044.1|386501_386906_+	hypothetical protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
WP_000729923.1|386909_387398_+	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
WP_000417860.1|387375_388875_+|terminase	terminase large subunit	terminase	Q76H24	Enterobacteria_phage	100.0	2.8e-307
WP_000774652.1|388874_391052_+|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
WP_000433855.1|391065_391977_+	scaffold protein	NA	Q76H22	Enterobacteria_phage	100.0	1.5e-162
WP_001196937.1|391976_393269_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	1.1e-243
WP_000538670.1|393309_393870_+	hypothetical protein	NA	C6ZR11	Salmonella_phage	100.0	9.8e-104
WP_001166103.1|393853_394354_+	packaged DNA stabilization gp4 family protein	NA	Q76H19	Enterobacteria_phage	100.0	4.2e-90
WP_001122420.1|394313_395732_+	packaged DNA stabilization protein gp10	NA	Q76H18	Enterobacteria_phage	100.0	6.4e-277
WP_000774917.1|395735_396437_+	hypothetical protein	NA	Q76H17	Enterobacteria_phage	100.0	1.7e-76
WP_000627593.1|396436_396892_+	DUF2824 family protein	NA	Q76H16	Enterobacteria_phage	100.0	1.8e-87
WP_000964904.1|396894_397584_+	hypothetical protein	NA	A0A2H5BFK5	Salmonella_phage	100.0	2.9e-118
WP_000246977.1|397594_399031_+	DNA transfer protein	NA	Q76H14	Enterobacteria_phage	100.0	7.7e-246
WP_001029860.1|399030_401007_+	hypothetical protein	NA	Q76H13	Enterobacteria_phage	100.0	0.0e+00
WP_071533035.1|401145_401439_+	hypothetical protein	NA	Q76H12	Enterobacteria_phage	100.0	3.2e-50
WP_000532177.1|401459_401708_-	Arc family DNA-binding protein	NA	Q76H48	Enterobacteria_phage	100.0	1.8e-38
WP_000129933.1|401843_403847_+	endorhamnosidase	NA	Q76H47	Enterobacteria_phage	100.0	0.0e+00
WP_000671496.1|403905_405363_-	glucosyltransferase domain-containing protein	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
WP_000703639.1|405352_406285_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
WP_000915528.1|406281_406644_-	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
415234:415250	attR	GATATTGAAATTCGCGT	NA	NA	NA	NA
>prophage 2
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	999578	1008310	4933618	transposase,protease	Dickeya_phage(14.29%)	7	NA	NA
WP_001201751.1|999578_1000697_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|1000693_1002640_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|1002769_1002991_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1003314_1003635_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|1003665_1005942_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|1006133_1006592_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.9	5.1e-10
WP_085983316.1|1007054_1008310_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 3
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	1058373	1157180	4933618	tRNA,holin,terminase,lysis,protease,tail,portal	Salmonella_phage(42.59%)	98	NA	NA
WP_001154025.1|1058373_1059177_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1059169_1060492_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1060472_1061177_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_022742649.1|1061176_1065643_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925872.1|1065987_1067829_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1068088_1068637_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1068664_1069312_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1069373_1070564_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977713.1|1070748_1071840_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1072446_1073847_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1074047_1074509_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544849.1|1074825_1076040_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000191399.1|1077797_1079000_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262306.1|1079194_1080487_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
WP_000065276.1|1080531_1080780_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1080820_1081060_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001539618.1|1081102_1082260_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_022742652.1|1082222_1085108_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	97.3	0.0e+00
WP_001668146.1|1085234_1085534_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_000917564.1|1085555_1085714_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_010989002.1|1085706_1085967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038966.1|1086016_1086427_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370145.1|1086546_1086786_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001574095.1|1086751_1087126_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000062941.1|1087210_1088194_+	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_000800010.1|1088196_1088946_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113629.1|1088956_1089304_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000065108.1|1089300_1089612_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_014343823.1|1089689_1089980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|1090271_1090505_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_000807548.1|1090616_1090838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001096552.1|1091731_1092343_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_001617856.1|1092339_1092486_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_022742653.1|1092475_1093273_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	5.2e-151
WP_010989004.1|1093339_1093657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|1093830_1093956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1094091_1094541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001141973.1|1094901_1095588_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_001574216.1|1095863_1096193_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984586.1|1096176_1096629_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001541990.1|1096646_1097126_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000371784.1|1097333_1097867_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989241.1|1097823_1099962_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000196190.1|1099958_1100165_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_001009207.1|1100161_1101709_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_001107908.1|1103802_1104126_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_000774239.1|1104118_1104418_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453194.1|1104398_1104965_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000196702.1|1104961_1105363_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000132756.1|1105374_1106124_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000478859.1|1106169_1106568_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_010989009.1|1106564_1106894_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_010989010.1|1106973_1109961_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_000978296.1|1109957_1110290_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_000725267.1|1110388_1110886_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1111002_1111536_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_022742655.1|1111625_1112321_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.2	6.5e-89
WP_000246065.1|1112965_1113670_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_022742658.1|1113741_1114635_+	host specificity protein J	NA	A0A2I6TCW5	Escherichia_phage	73.3	2.4e-128
WP_022742659.1|1114627_1117093_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	66.6	9.8e-265
WP_000178849.1|1117131_1117374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742660.1|1117427_1119866_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.6	1.7e-91
WP_022742661.1|1119865_1120447_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.5	3.3e-94
WP_001533476.1|1120922_1121891_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.7	7.9e-194
WP_000334547.1|1122538_1123165_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_010989011.1|1123233_1123533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525490.1|1123517_1124204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1124474_1124666_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1125092_1127705_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_022742665.1|1127912_1128923_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1129088_1129631_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1129627_1130737_-	YcbX family protein	NA	NA	NA	NA	NA
WP_001086485.1|1130835_1132944_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1132956_1134864_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|1134878_1136132_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1136136_1137777_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1137773_1138337_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1138592_1138760_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1138859_1139378_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156454.1|1139446_1141207_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1141392_1141845_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1141916_1142969_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1143325_1143835_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1144051_1144657_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1144643_1146797_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1146815_1147262_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|1147385_1149440_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1149475_1149934_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1150028_1150691_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1150864_1151278_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1151322_1151640_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1151697_1152909_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1153123_1153672_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1153697_1154477_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000072884.1|1154525_1154807_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1154803_1155133_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1155219_1155879_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1156499_1157180_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 4
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	1898571	1997798	4933618	tRNA,plate,holin,transposase,terminase,lysis,integrase,protease,tail,head	Edwardsiella_phage(15.25%)	121	1953700:1953714	1995638:1995652
WP_001221014.1|1898571_1899267_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000128807.1|1899324_1901235_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.7	4.5e-92
WP_000029550.1|1901365_1901710_+	RidA family protein	NA	NA	NA	NA	NA
WP_000457328.1|1901715_1901895_-	YoaH family protein	NA	NA	NA	NA	NA
WP_000978464.1|1901975_1903340_+	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	35.0	1.9e-44
WP_000381544.1|1903343_1903922_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_000624277.1|1904185_1905550_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_001192525.1|1905687_1907289_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
WP_000421815.1|1907310_1908870_-	CNNM family cation transport protein YoaE	NA	A0A0R6PEZ3	Moraxella_phage	44.4	9.5e-40
WP_000150521.1|1909342_1910311_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_000406918.1|1910363_1911164_+	PTS mannose transporter subunit IIC	NA	NA	NA	NA	NA
WP_001518647.1|1911176_1912028_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
WP_000156280.1|1912085_1912544_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
WP_001518359.1|1912953_1913520_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
WP_022742705.1|1913516_1914326_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
WP_000730322.1|1914391_1916137_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA	NA
WP_001062678.1|1916356_1916566_-	transcription antiterminator/RNA stability regulator CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
WP_001537930.1|1916578_1916722_-	YobF family protein	NA	NA	NA	NA	NA
WP_001000660.1|1917370_1917658_-	YebO family protein	NA	NA	NA	NA	NA
WP_000714547.1|1917728_1917872_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
WP_001236777.1|1918029_1918269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001262195.1|1918480_1919272_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_000416128.1|1919447_1920821_+	MFS transporter	NA	NA	NA	NA	NA
WP_000984498.1|1920868_1921750_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001091237.1|1921943_1923992_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
WP_000431401.1|1924011_1924698_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001518229.1|1924795_1925293_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_001207294.1|1925421_1926705_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_031603542.1|1926673_1929307_+	PqiB family protein	NA	NA	NA	NA	NA
WP_001542138.1|1929384_1930824_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
WP_024131108.1|1930941_1931178_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_000457836.1|1931288_1931480_+	YebW family protein	NA	NA	NA	NA	NA
WP_000986176.1|1931498_1932149_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
WP_001134856.1|1932372_1932537_-	membrane protein	NA	NA	NA	NA	NA
WP_000182072.1|1932821_1933544_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_022742706.1|1934227_1934623_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.0	6.0e-15
WP_000030934.1|1934952_1935429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000354408.1|1935816_1936236_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001752421.1|1936605_1936875_+	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
WP_001617922.1|1937040_1937181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000684835.1|1938644_1939013_+|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
WP_001233446.1|1940316_1941231_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000480735.1|1941363_1941522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000848069.1|1941531_1942146_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_001520350.1|1942633_1942780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000457876.1|1943293_1943419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989029.1|1943988_1944189_+	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_000275418.1|1944285_1945167_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
WP_001521334.1|1945639_1945828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|1945892_1946060_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001050882.1|1946316_1946850_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
WP_001013467.1|1946903_1947134_-	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_010989030.1|1947323_1947818_+	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
WP_176731523.1|1947889_1948732_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.3e-71
WP_022742707.1|1949639_1950782_+	lipopolysaccharide N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_022742708.1|1951044_1951944_+	SMEK domain-containing protein	NA	NA	NA	NA	NA
WP_022742709.1|1952474_1953131_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_024150649.1|1953131_1953827_-	hypothetical protein	NA	NA	NA	NA	NA
1953700:1953714	attL	GCATTAATGCCAACT	NA	NA	NA	NA
WP_022742711.1|1954209_1954785_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	2.9e-95
WP_022742712.1|1954784_1956236_-|tail	tail fiber protein	tail	E5G6P0	Salmonella_phage	71.2	2.9e-43
WP_022742713.1|1956225_1956828_-	DUF2612 domain-containing protein	NA	H9C0Y0	Aeromonas_phage	43.2	5.9e-30
WP_022742714.1|1956829_1958071_-|plate	baseplate J/gp47 family protein	plate	A0A077KGW9	Edwardsiella_phage	49.6	4.5e-101
WP_001191865.1|1958067_1958424_-	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
WP_022742715.1|1958436_1959114_-	hypothetical protein	NA	A0A077KAY0	Edwardsiella_phage	35.5	4.6e-31
WP_000122818.1|1959094_1959964_-	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
WP_000890115.1|1959960_1960263_-	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
WP_022742716.1|1960262_1960973_-	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.6	6.5e-28
WP_022742717.1|1960969_1963141_-	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	67.1	1.4e-49
WP_000228831.1|1963124_1963307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000101348.1|1963348_1963753_-	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	1.8e-19
WP_000016414.1|1963752_1964199_-	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
WP_001748488.1|1964199_1965684_-	DUF3383 domain-containing protein	NA	A0A077KGV4	Edwardsiella_phage	41.0	4.0e-96
WP_000094504.1|1965664_1966210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001748490.1|1966194_1966560_-	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	39.7	8.8e-21
WP_022742718.1|1966556_1967141_-	hypothetical protein	NA	H9C0W2	Aeromonas_phage	30.6	3.2e-17
WP_023139348.1|1967134_1967590_-	DUF4054 domain-containing protein	NA	Q2NPC6	Xanthomonas_phage	46.0	1.2e-19
WP_001748493.1|1967596_1967944_-	hypothetical protein	NA	H9C0V9	Aeromonas_phage	40.2	3.0e-10
WP_001031915.1|1967947_1968976_-	hypothetical protein	NA	A0A219YBB0	Aeromonas_phage	48.7	2.3e-82
WP_001525451.1|1968975_1969458_-	hypothetical protein	NA	A0A1X9SFC3	Acinetobacter_phage	48.8	1.1e-26
WP_023139349.1|1969459_1970806_-	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	37.4	3.2e-68
WP_000552017.1|1970802_1971492_-|head	head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.6	4.5e-58
WP_023139350.1|1971532_1973053_-	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	44.4	7.5e-106
WP_022742723.1|1973052_1974474_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	68.0	1.8e-186
WP_022742724.1|1974439_1975192_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	75.6	5.3e-12
WP_001113128.1|1975262_1975445_-	DUF826 domain-containing protein	NA	NA	NA	NA	NA
WP_085983312.1|1975670_1976111_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	84.3	3.5e-56
WP_001208103.1|1976131_1976620_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	68.1	2.1e-57
WP_001526513.1|1976597_1976900_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_000502119.1|1977066_1977525_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.9	5.1e-10
WP_022742726.1|1977802_1978348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023139352.1|1978338_1978545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023139353.1|1979022_1979952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023139354.1|1980500_1980842_-	antitermination protein from phage origin	NA	A0A0P0ZCW0	Stx2-converting_phage	84.1	1.1e-54
WP_023139355.1|1981181_1981493_-	DUF1364 family protein	NA	K7P7Q1	Enterobacteria_phage	84.8	6.1e-39
WP_021000145.1|1981489_1981684_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	6.1e-13
WP_022742730.1|1981680_1982280_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	83.9	5.0e-98
WP_023139356.1|1982343_1982592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024150652.1|1982841_1982994_-	Hok/Gef family protein	NA	NA	NA	NA	NA
WP_023139357.1|1983200_1983473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022742732.1|1983469_1983865_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	37.0	6.4e-17
WP_157872077.1|1983877_1984420_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.1e-67
WP_022742734.1|1984331_1985339_-	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.5	1.8e-124
WP_001534383.1|1985382_1985877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033911.1|1985863_1986118_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
WP_001574209.1|1986216_1986615_+	helix-turn-helix domain-containing protein	NA	K7PH19	Enterobacteria_phage	56.0	1.2e-18
WP_024135672.1|1987045_1987225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000103933.1|1987485_1987761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682660.1|1987764_1987971_+	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
WP_000799627.1|1988046_1988382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022742735.1|1988522_1991213_+	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.6	2.2e-116
WP_001534364.1|1991205_1992036_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
WP_001033921.1|1992071_1992392_+	hypothetical protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
WP_023139358.1|1992384_1992717_+	hypothetical protein	NA	S4TNP2	Salmonella_phage	72.7	8.5e-15
WP_023139359.1|1993327_1993507_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	60.3	7.3e-13
WP_022742739.1|1993605_1994034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001575998.1|1994094_1994373_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
WP_022742740.1|1994347_1995427_+|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.8	1.3e-101
WP_000722368.1|1995809_1996163_-	YebY family protein	NA	NA	NA	NA	NA
1995638:1995652	attR	AGTTGGCATTAATGC	NA	NA	NA	NA
WP_000979702.1|1996179_1997055_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|1997055_1997430_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|1997567_1997798_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 5
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	2073249	2151908	4933618	plate,holin,terminase,head,integrase,capsid,protease,tail,transposase,portal	Salmonella_phage(82.35%)	102	2079787:2079802	2153530:2153545
WP_000502119.1|2073249_2073708_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	33.9	5.1e-10
WP_000659236.1|2073888_2075094_-	flagellin lysine-N-methylase	NA	NA	NA	NA	NA
WP_038406562.1|2075172_2076660_-	flagellin FliC	NA	NA	NA	NA	NA
WP_000146802.1|2076916_2078320_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_000287764.1|2078334_2078742_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_000204899.1|2078741_2079110_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA	NA
WP_000795487.1|2079181_2080666_+	alpha-amylase	NA	NA	NA	NA	NA
2079787:2079802	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
WP_000754695.1|2080705_2081131_-	lipoprotein	NA	NA	NA	NA	NA
WP_000790504.1|2082517_2082751_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_000639596.1|2083015_2083402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719036.1|2083521_2083836_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001276834.1|2084052_2085735_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_000067735.1|2085727_2086723_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_000064163.1|2086715_2087423_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000213257.1|2087422_2088793_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_000046981.1|2088814_2089258_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
WP_000631669.1|2089254_2090472_+	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000132169.1|2090576_2091044_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000502811.1|2091048_2092053_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_001282115.1|2092049_2092463_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_000978276.1|2092462_2092840_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001253410.1|2092839_2093577_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_000187355.1|2093586_2093856_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_000616953.1|2093864_2094659_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000103974.1|2094940_2095564_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_000867218.1|2095602_2095797_-	protein DsrB	NA	NA	NA	NA	NA
WP_000844798.1|2095925_2096153_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA	NA
WP_000948794.1|2096462_2097278_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
WP_001119821.1|2097256_2098969_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
WP_000232161.1|2099133_2099319_-	YodC family protein	NA	NA	NA	NA	NA
WP_085983315.1|2099395_2100313_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001212264.1|2100482_2101403_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000785978.1|2101391_2101862_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001157322.1|2101842_2103273_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377041.1|2103346_2104042_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|2104133_2104433_-	membrane protein	NA	NA	NA	NA	NA
WP_001080680.1|2105082_2106279_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_024131109.1|2106539_2106728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2106738_2106951_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457662.1|2107405_2108674_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000394196.1|2108676_2109096_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000500831.1|2109222_2109384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001093793.1|2110577_2110790_+	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
WP_000842532.1|2110786_2111200_+	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	100.0	2.9e-73
WP_122815478.1|2111247_2111361_+	hypothetical protein	NA	A0A1C9IHU6	Salmonella_phage	100.0	4.3e-11
WP_000836773.1|2111435_2111669_+	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
WP_022742744.1|2111782_2112388_-|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	100.0	2.7e-107
WP_020899405.1|2112357_2113920_-	hypothetical protein	NA	A0A192Y7M1	Salmonella_phage	100.0	1.0e-288
WP_001207832.1|2113906_2114494_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_000785578.1|2114496_2115576_-|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	100.0	2.9e-205
WP_000605051.1|2115568_2115982_-	phage GP46 family protein	NA	A0A192Y6D0	Salmonella_phage	100.0	3.1e-75
WP_001273648.1|2115986_2116520_-|plate	phage baseplate assembly protein	plate	A0A192Y8K5	Salmonella_phage	100.0	8.4e-97
WP_001066630.1|2116519_2117578_-|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	100.0	1.3e-202
WP_000863827.1|2117574_2118915_-	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	100.0	5.2e-252
WP_000785390.1|2118948_2120877_-|tail	phage tail tape measure protein	tail	A0A192Y6D8	Salmonella_phage	100.0	0.0e+00
WP_022742746.1|2120961_2121255_-	hypothetical protein	NA	A0A192Y6C5	Salmonella_phage	100.0	2.6e-47
WP_000515952.1|2121284_2121641_-|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_001007996.1|2121640_2123137_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A192Y7L1	Salmonella_phage	100.0	2.1e-278
WP_000497740.1|2123126_2123291_-	DUF2635 domain-containing protein	NA	A0A1C9II04	Salmonella_phage	100.0	1.3e-24
WP_000779216.1|2123294_2123855_-	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	100.0	8.0e-106
WP_001135699.1|2123851_2124364_-	hypothetical protein	NA	A0A192Y6D2	Salmonella_phage	100.0	3.5e-92
WP_000702410.1|2124335_2124740_-|head	phage head closure protein	head	A0A192Y6C2	Salmonella_phage	100.0	3.2e-72
WP_000927378.1|2124736_2125060_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000601352.1|2125062_2125263_-	hypothetical protein	NA	A0A192Y7K5	Salmonella_phage	100.0	1.8e-28
WP_000257526.1|2125313_2126519_-|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	100.0	7.0e-224
WP_001193639.1|2126533_2127184_-|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_020899404.1|2127161_2128403_-|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.3	2.9e-241
WP_000605609.1|2128402_2128585_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_000088175.1|2128596_2130330_-|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	98.3	0.0e+00
WP_000929171.1|2130326_2130821_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B2F4	Salmonella_phage	100.0	1.7e-88
WP_001135098.1|2130946_2131297_-	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.8	9.8e-62
WP_001379492.1|2131347_2131680_-	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	2.8e-58
WP_001530346.1|2132142_2132535_-	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	100.0	2.8e-65
WP_001624504.1|2132531_2133146_-	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	100.0	5.7e-113
WP_000422366.1|2133145_2133427_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
WP_001283169.1|2133413_2133800_-|holin	phage holin family protein	holin	A0A192Y8P2	Salmonella_phage	100.0	7.0e-61
WP_001624505.1|2133945_2134203_-	hypothetical protein	NA	A0A1C9IHX4	Salmonella_phage	100.0	3.1e-41
WP_020899401.1|2134353_2135106_-	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	100.0	1.8e-145
WP_020899400.1|2135119_2136109_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	99.1	4.0e-193
WP_020899399.1|2136116_2136977_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.7	8.4e-163
WP_001241579.1|2136993_2137383_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_000066908.1|2137379_2138273_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001684745.1|2138272_2138755_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000061500.1|2138756_2139575_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_000620702.1|2139571_2139796_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_001087402.1|2139792_2140950_-	Rha family phage regulatory protein	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000509731.1|2140946_2141501_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|2141529_2141754_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_001020636.1|2141851_2142547_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_001067432.1|2142752_2143091_+	hypothetical protein	NA	A0A1C9IHZ4	Salmonella_phage	100.0	7.0e-57
WP_023891434.1|2143053_2143278_-	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	100.0	1.6e-33
WP_000997191.1|2143817_2144189_+	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	100.0	2.5e-63
WP_000080416.1|2144246_2145074_+	DUF2303 family protein	NA	A0A192Y6E5	Salmonella_phage	100.0	2.6e-153
WP_000008351.1|2145210_2145750_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000215886.1|2145820_2146354_+	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	100.0	2.5e-101
WP_000224241.1|2146355_2146613_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
WP_020899398.1|2146623_2147205_+	hypothetical protein	NA	A0A192Y6F5	Salmonella_phage	100.0	4.7e-109
WP_001061334.1|2147208_2147778_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_001527041.1|2147817_2148045_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_000532847.1|2148046_2149036_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_000598920.1|2149327_2150125_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001219015.1|2151434_2151908_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
2153530:2153545	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 6
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	2317421	2326592	4933618	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195332.1|2317421_2319455_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|2319695_2320154_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197952.1|2320325_2320856_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2320912_2321380_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2321426_2322146_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2322142_2323828_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2324050_2324782_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2324841_2324949_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2324929_2325661_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2325644_2326592_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 7
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	2345830	2412226	4933618	holin,lysis,tail	Salmonella_phage(28.57%)	60	NA	NA
WP_000989296.1|2345830_2346526_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_000553526.1|2346679_2347564_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000920081.1|2347740_2348460_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_000605187.1|2348456_2348702_+	DUF2542 family protein	NA	NA	NA	NA	NA
WP_001136409.1|2348906_2350148_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000956095.1|2350141_2351377_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
WP_001275101.1|2351451_2352462_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_000535907.1|2352477_2353998_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.0e-09
WP_001036943.1|2354131_2355130_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_000628631.1|2355628_2356651_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
WP_001526153.1|2356800_2357943_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_001139611.1|2357957_2358626_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	4.1e-56
WP_000425488.1|2358955_2359813_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000876817.1|2359801_2360191_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000443208.1|2360195_2361563_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_000022915.1|2361779_2362667_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_000023807.1|2362699_2364022_+	MFS transporter	NA	NA	NA	NA	NA
WP_000488255.1|2364065_2366057_-	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
WP_000535000.1|2366402_2367872_-	lysine-specific permease	NA	NA	NA	NA	NA
WP_000548308.1|2368061_2368925_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000137961.1|2369045_2370095_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000873909.1|2370173_2371031_+	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	28.5	2.2e-22
WP_000854414.1|2371095_2372784_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000091249.1|2372800_2373739_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_000487287.1|2373738_2374869_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA	NA
WP_000551937.1|2375237_2376419_+	sugar efflux transporter SetB	NA	NA	NA	NA	NA
WP_001213882.1|2376483_2377149_-	membrane protein	NA	NA	NA	NA	NA
WP_001519564.1|2377150_2377273_-	membrane protein	NA	NA	NA	NA	NA
WP_010989043.1|2377660_2377915_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001136822.1|2378238_2378811_+	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
WP_000169350.1|2379023_2380010_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000178095.1|2380039_2380759_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000241015.1|2381172_2381745_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
WP_000957746.1|2382070_2383627_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
WP_000561748.1|2383733_2385539_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000501623.1|2385548_2386643_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_001137764.1|2386642_2387668_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000203622.1|2387669_2389259_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	8.5e-20
WP_001094639.1|2389262_2389607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213347.1|2389997_2391188_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	2.4e-19
WP_001234836.1|2391215_2391911_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000578121.1|2392062_2393823_+	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.9e-100
WP_000494192.1|2393947_2394232_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_000033440.1|2394340_2394961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050806.1|2394988_2395996_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_001135904.1|2396175_2396403_+	YejL family protein	NA	NA	NA	NA	NA
WP_000256150.1|2396434_2398195_+	cardiolipin transport protein PbgA	NA	NA	NA	NA	NA
WP_000806401.1|2398475_2398979_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2399006_2399297_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2399644_2401474_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2401527_2401971_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_001215679.1|2402348_2402876_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2402878_2404120_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2404712_2405042_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000894640.1|2405338_2406670_+	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_010989045.1|2406698_2407067_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_001202279.1|2407081_2408071_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
WP_001115840.1|2408399_2410766_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
WP_001113462.1|2410934_2411138_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2411434_2412226_-|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
>prophage 8
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	2751807	2858783	4933618	tRNA,holin,transposase,terminase,lysis,integrase,capsid,tail,head,portal	Salmonella_phage(34.43%)	110	2776351:2776367	2865311:2865327
WP_000940032.1|2751807_2752539_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553467.1|2752657_2753461_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000174944.1|2753605_2754484_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
WP_000985204.1|2754665_2755709_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA	NA
WP_000017587.1|2755712_2756531_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
WP_000020685.1|2756541_2757555_+	sulfite reductase subunit C	NA	NA	NA	NA	NA
WP_038406573.1|2757551_2758541_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000805728.1|2758531_2759170_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_000982961.1|2759295_2760573_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_001173729.1|2760567_2761707_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_000919178.1|2761902_2763156_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
WP_000883146.1|2763480_2764671_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_001187150.1|2764852_2766397_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA	NA
WP_000100008.1|2766757_2768089_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001100652.1|2768171_2770316_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000856793.1|2770371_2771832_+	dipeptide permease DtpD	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
WP_000717694.1|2771880_2772219_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000625591.1|2772295_2773633_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_001054236.1|2773629_2774394_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001670672.1|2774395_2775826_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
2776351:2776367	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000970045.1|2776475_2780363_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
WP_001747289.1|2780384_2780618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734248.1|2780618_2782163_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001134566.1|2782213_2782765_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|2782789_2783425_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_000361663.1|2783428_2784790_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001048530.1|2784800_2785694_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000995703.1|2785809_2786658_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000684022.1|2786696_2787614_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001022463.1|2788946_2789873_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001196290.1|2789910_2790171_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_000986043.1|2790282_2790663_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000818972.1|2790662_2791394_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_031626753.1|2791405_2792134_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102232.1|2792145_2793051_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|2793047_2793728_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002559.1|2794001_2794976_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|2794992_2796792_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_010989047.1|2797196_2798690_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_154071814.1|2799062_2799206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001542312.1|2799210_2799348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001526383.1|2800060_2800180_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001738443.1|2800932_2801145_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_010989049.1|2801251_2801479_+	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_000143154.1|2801575_2802154_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_000593433.1|2802143_2802968_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_022742779.1|2802964_2805337_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	65.4	2.0e-89
WP_000178853.1|2805390_2805633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514917.1|2805671_2809034_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
WP_000246126.1|2809095_2809743_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000662739.1|2809640_2810378_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_001152689.1|2810384_2811083_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000447369.1|2811092_2811422_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_022742781.1|2811424_2814520_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.6	1.1e-276
WP_010989052.1|2814491_2814830_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2814826_2815222_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971953.1|2815272_2816019_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_022742782.1|2816026_2816428_-	hypothetical protein	NA	Q9G0F3	Phage_Gifsy-1	99.0	4.0e-51
WP_000677089.1|2816424_2817003_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000083293.1|2816989_2817367_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.5e-28
WP_000201485.1|2817377_2817743_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_022742784.1|2817800_2818829_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.3e-114
WP_000011260.1|2818883_2819231_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189498.1|2819243_2820740_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	1.1e-96
WP_000831821.1|2820729_2822310_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|2822306_2822510_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000623088.1|2822493_2824425_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.3e-259
WP_001102153.1|2824396_2824942_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669689.1|2825227_2825629_+	PPC domain-containing protein	NA	NA	NA	NA	NA
WP_031603581.1|2825885_2826389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050955063.1|2826716_2827163_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	83.9	9.3e-57
WP_022742788.1|2827195_2827810_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.6	2.2e-109
WP_021000643.1|2827809_2828091_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294873.1|2828077_2828467_-|holin	phage holin family protein	holin	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
WP_023221874.1|2828556_2828745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024150660.1|2829271_2829697_-	subtilase	NA	NA	NA	NA	NA
WP_022742790.1|2829829_2830555_-	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	66.2	4.0e-81
WP_022742791.1|2830755_2831334_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	57.2	1.1e-49
WP_050196634.1|2831348_2832338_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	3.5e-189
WP_024150661.1|2832345_2833206_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.3	9.2e-162
WP_000767086.1|2833222_2833612_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	97.7	1.6e-68
WP_024150662.1|2834500_2834983_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	97.5	1.8e-85
WP_022742797.1|2834984_2835944_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	80.9	1.2e-117
WP_000620702.1|2835940_2836165_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_031609052.1|2836161_2837304_-	Rha family phage regulatory protein	NA	A0A1C9IHV9	Salmonella_phage	98.2	1.0e-208
WP_023139406.1|2837300_2837855_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	99.5	1.2e-101
WP_001191666.1|2837883_2838108_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_001020640.1|2838205_2838901_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
WP_000917563.1|2839254_2839413_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	100.0	2.4e-23
WP_022742800.1|2839434_2839785_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	98.3	6.4e-61
WP_022742801.1|2839911_2842839_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	98.2	0.0e+00
WP_022742802.1|2842801_2843959_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	4.7e-217
WP_001237031.1|2844001_2844241_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001670787.1|2844281_2844566_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_022742803.1|2844543_2845773_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	93.9	5.4e-232
WP_000589087.1|2846270_2846750_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2846746_2847703_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_001168374.1|2847702_2848353_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2848384_2848960_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2848956_2849121_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_022742804.1|2849384_2851007_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2850991_2851729_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2851859_2853194_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001526875.1|2853211_2854111_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2854213_2854801_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2854862_2855246_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|2855564_2856254_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|2856369_2857407_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098732.1|2857610_2858030_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000183639.1|2858102_2858783_+|tRNA	tRNA-uridine aminocarboxypropyltransferase	tRNA	NA	NA	NA	NA
2865311:2865327	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 9
NZ_CP007581	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 chromosome, complete genome	4933618	4494818	4515236	4933618	plate,holin,tail	Burkholderia_phage(47.37%)	25	NA	NA
WP_000587738.1|4494818_4495547_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_010989092.1|4495743_4496034_-	membrane protein	NA	NA	NA	NA	NA
WP_000084331.1|4496282_4496738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526208.1|4496734_4497340_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000368196.1|4497344_4499090_-|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
WP_000359500.1|4499092_4499725_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4499717_4500833_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4500823_4501183_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4501346_4502894_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703632.1|4502893_4503823_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_000593182.1|4503819_4504182_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679398.1|4504509_4505232_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4505241_4506285_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4506272_4506482_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_001262499.1|4507433_4509788_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
WP_001185654.1|4509884_4510013_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4509972_4510290_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4510341_4510866_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4510865_4512293_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4512282_4512480_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4512476_4512932_-	Gp37 family protein	NA	NA	NA	NA	NA
WP_000777266.1|4513091_4513406_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270441.1|4513418_4514024_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
WP_001226442.1|4514026_4514314_-|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4514888_4515236_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 1
NZ_CP007582	Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 plasmid unnamed, complete sequence	91739	40863	50159	91739	transposase	Escherichia_phage(28.57%)	11	NA	NA
WP_001541564.1|40863_41280_+	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
WP_001527010.1|41463_41799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001541562.1|41855_42422_+	DUF2913 family protein	NA	NA	NA	NA	NA
WP_000728917.1|42453_43395_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_000427676.1|43809_45015_+	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000064274.1|45014_45989_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	5.1e-84
WP_022743179.1|46070_47345_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.9	3.9e-156
WP_000925627.1|47344_47767_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000490265.1|48277_48748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000369839.1|48740_49097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088645.1|49478_50159_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
