assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000685665.1_ASM68566v1	NZ_CP007604	Helicobacter pylori strain BM013A chromosome, complete genome	1	337628-337749	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	GAAGAAATCATTTCAAAAAAACAAGAAGAATT	32	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|113aa|up_0|NZ_CP007604.1_336894_337233_+,NA|256aa|down_2|NZ_CP007604.1_339330_340098_+	NA|181aa|up_9|NZ_CP007604.1_329944_330487_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_8|NZ_CP007604.1_330419_331358_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_7|NZ_CP007604.1_331354_332137_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_6|NZ_CP007604.1_332385_333378_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_5|NZ_CP007604.1_333401_334208_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_4|NZ_CP007604.1_334204_334438_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_3|NZ_CP007604.1_334444_335245_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_2|NZ_CP007604.1_335241_335646_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|287aa|up_1|NZ_CP007604.1_335920_336781_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|113aa|up_0|NZ_CP007604.1_336894_337233_+	NA	NA|93aa|down_0|NZ_CP007604.1_337833_338112_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|129aa|down_1|NZ_CP007604.1_338762_339149_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|256aa|down_2|NZ_CP007604.1_339330_340098_+	NA	NA|299aa|down_3|NZ_CP007604.1_341231_342128_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_4|NZ_CP007604.1_342127_343678_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_5|NZ_CP007604.1_343686_345303_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_6|NZ_CP007604.1_345559_346228_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_7|NZ_CP007604.1_346271_347975_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_8|NZ_CP007604.1_347992_349024_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|260aa|down_9|NZ_CP007604.1_349010_349790_+	PRK06669, fliH, flagellar assembly protein H; Validated
GCF_000685665.1_ASM68566v1	NZ_CP007604	Helicobacter pylori strain BM013A chromosome, complete genome	2	339197-339327	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	GTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTT	38	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|113aa|up_3|NZ_CP007604.1_336894_337233_+,NA|187aa|up_2|NZ_CP007604.1_337216_337777_+,NA|256aa|down_0|NZ_CP007604.1_339330_340098_+	NA|331aa|up_9|NZ_CP007604.1_332385_333378_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_8|NZ_CP007604.1_333401_334208_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_7|NZ_CP007604.1_334204_334438_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_6|NZ_CP007604.1_334444_335245_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_5|NZ_CP007604.1_335241_335646_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|287aa|up_4|NZ_CP007604.1_335920_336781_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|113aa|up_3|NZ_CP007604.1_336894_337233_+	NA	NA|187aa|up_2|NZ_CP007604.1_337216_337777_+	NA	NA|93aa|up_1|NZ_CP007604.1_337833_338112_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|129aa|up_0|NZ_CP007604.1_338762_339149_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|256aa|down_0|NZ_CP007604.1_339330_340098_+	NA	NA|299aa|down_1|NZ_CP007604.1_341231_342128_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_2|NZ_CP007604.1_342127_343678_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_3|NZ_CP007604.1_343686_345303_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_4|NZ_CP007604.1_345559_346228_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_5|NZ_CP007604.1_346271_347975_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_6|NZ_CP007604.1_347992_349024_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|260aa|down_7|NZ_CP007604.1_349010_349790_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|617aa|down_8|NZ_CP007604.1_349792_351643_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|597aa|down_9|NZ_CP007604.1_351657_353448_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional
GCF_000685665.1_ASM68566v1	NZ_CP007604	Helicobacter pylori strain BM013A chromosome, complete genome	3	853272-853368	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	AATTTTACCTTTTTACACATTCTAGCCAAAATTT	34	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|292aa|up_9|NZ_CP007604.1_839091_839967_-,NA|615aa|up_2|NZ_CP007604.1_848467_850312_-,NA|124aa|down_6|NZ_CP007604.1_861164_861536_-,NA|146aa|down_7|NZ_CP007604.1_864380_864818_+	NA|292aa|up_9|NZ_CP007604.1_839091_839967_-	NA	NA|509aa|up_8|NZ_CP007604.1_840118_841645_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|792aa|up_7|NZ_CP007604.1_841968_844344_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|158aa|up_6|NZ_CP007604.1_844344_844818_-	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|242aa|up_5|NZ_CP007604.1_844948_845674_+	COG1432, COG1432, Uncharacterized conserved protein [Function unknown]	NA|292aa|up_4|NZ_CP007604.1_846883_847759_-	pfam12033, DUF3519, Protein of unknown function (DUF3519)	NA|184aa|up_3|NZ_CP007604.1_847890_848442_-	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|615aa|up_2|NZ_CP007604.1_848467_850312_-	NA	NA|487aa|up_1|NZ_CP007604.1_850404_851865_+	pfam03023, MVIN, MviN-like protein	NA|466aa|up_0|NZ_CP007604.1_851865_853263_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|1314aa|down_0|NZ_CP007604.1_853548_857490_+	pfam02691, VacA, Vacuolating cyotoxin	NA|256aa|down_1|NZ_CP007604.1_857547_858315_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_2|NZ_CP007604.1_858314_859295_-	pfam01032, FecCD, FecCD transport family	NA|285aa|down_3|NZ_CP007604.1_859287_860142_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|175aa|down_4|NZ_CP007604.1_860281_860806_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|89aa|down_5|NZ_CP007604.1_860911_861178_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|124aa|down_6|NZ_CP007604.1_861164_861536_-	NA	NA|146aa|down_7|NZ_CP007604.1_864380_864818_+	NA	NA|371aa|down_8|NZ_CP007604.1_864768_865881_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|79aa|down_9|NZ_CP007604.1_865898_866135_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
GCF_000685665.1_ASM68566v1	NZ_CP007604	Helicobacter pylori strain BM013A chromosome, complete genome	4	894384-894582	4,1	CRISPRCasFinder,PILER-CR	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	AGCTTCAATCAAGGGACTTATCACTTTA,TTCAATCAAGGGACTTATCACTT	28,23	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|207aa|up_9|NZ_CP007604.1_874929_875550_+,NA|220aa|down_8|NZ_CP007604.1_907296_907956_+	NA|207aa|up_9|NZ_CP007604.1_874929_875550_+	NA	NA|384aa|up_8|NZ_CP007604.1_875530_876682_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|679aa|up_7|NZ_CP007604.1_876685_878722_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_6|NZ_CP007604.1_879539_881093_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|532aa|up_5|NZ_CP007604.1_881114_882710_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_4|NZ_CP007604.1_883497_885042_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|144aa|up_3|NZ_CP007604.1_887903_888335_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP007604.1_888339_891597_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP007604.1_891695_892388_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP007604.1_892531_893530_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|365aa|down_0|NZ_CP007604.1_900863_901958_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP007604.1_902018_902225_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP007604.1_902387_902969_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP007604.1_902965_904111_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NZ_CP007604.1_904079_905030_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP007604.1_905030_905573_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP007604.1_905588_906500_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP007604.1_906496_907300_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP007604.1_907296_907956_+	NA	NA|201aa|down_9|NZ_CP007604.1_907957_908560_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
