assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000685705.1_ASM68570v1	NZ_CP007605	Helicobacter pylori strain BM012B chromosome, complete genome	1	653309-653406	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	TTAAAAACGCTAAAAAGGATTTT	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh	NA|135aa|up_8|NZ_CP007605.1_645754_646159_+,NA|231aa|up_5|NZ_CP007605.1_648068_648761_-,NA|121aa|up_3|NZ_CP007605.1_649974_650337_+,NA|85aa|up_0|NZ_CP007605.1_652859_653114_-,NA	NA|88aa|up_9|NZ_CP007605.1_645475_645739_+	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter	NA|135aa|up_8|NZ_CP007605.1_645754_646159_+	NA	NA|293aa|up_7|NZ_CP007605.1_646242_647121_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|294aa|up_6|NZ_CP007605.1_647133_648015_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|231aa|up_5|NZ_CP007605.1_648068_648761_-	NA	NA|370aa|up_4|NZ_CP007605.1_648771_649881_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|121aa|up_3|NZ_CP007605.1_649974_650337_+	NA	NA|321aa|up_2|NZ_CP007605.1_650336_651299_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|382aa|up_1|NZ_CP007605.1_651304_652450_-	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|85aa|up_0|NZ_CP007605.1_652859_653114_-	NA	NA|744aa|down_0|NZ_CP007605.1_653672_655904_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|252aa|down_1|NZ_CP007605.1_656203_656959_-	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|542aa|down_2|NZ_CP007605.1_657019_658645_-	TIGR00456, Arginine--tRNA_ligase, arginyl-tRNA synthetase	NA|80aa|down_3|NZ_CP007605.1_658647_658887_-	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|207aa|down_4|NZ_CP007605.1_658957_659578_-	TIGR03263, Guanylate_kinase, guanylate kinase	NA|541aa|down_5|NZ_CP007605.1_659570_661193_-	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|181aa|down_6|NZ_CP007605.1_661334_661877_+	PRK13912, PRK13912, nuclease NucT; Provisional	NA|246aa|down_7|NZ_CP007605.1_661885_662623_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|238aa|down_8|NZ_CP007605.1_662752_663466_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|228aa|down_9|NZ_CP007605.1_663483_664167_+	TIGR03584, PseF, pseudaminic acid cytidylyltransferase
GCF_000685705.1_ASM68570v1	NZ_CP007605	Helicobacter pylori strain BM012B chromosome, complete genome	2	741828-742024	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	TAAGTCCCTTGATTGAAAGCGCTGTT	26	0	0	NA	NA	NA	3	3	Orphan	c2c9_V-U4,cas3,DEDDh	NA|220aa|up_8|NZ_CP007605.1_728124_728784_-,NA|196aa|down_9|NZ_CP007605.1_760865_761453_-	NA|201aa|up_9|NZ_CP007605.1_727520_728123_-	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|220aa|up_8|NZ_CP007605.1_728124_728784_-	NA	NA|268aa|up_7|NZ_CP007605.1_728780_729584_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|304aa|up_6|NZ_CP007605.1_729580_730492_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|181aa|up_5|NZ_CP007605.1_730507_731050_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|317aa|up_4|NZ_CP007605.1_731050_732001_-	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|382aa|up_3|NZ_CP007605.1_731969_733115_-	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|194aa|up_2|NZ_CP007605.1_733111_733693_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|69aa|up_1|NZ_CP007605.1_733820_734027_+	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|367aa|up_0|NZ_CP007605.1_734089_735190_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|333aa|down_0|NZ_CP007605.1_742874_743873_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP007605.1_744015_744708_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP007605.1_744806_748064_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP007605.1_748068_748500_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|812aa|down_4|NZ_CP007605.1_748760_751196_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|515aa|down_5|NZ_CP007605.1_751442_752987_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|531aa|down_6|NZ_CP007605.1_753757_755350_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|519aa|down_7|NZ_CP007605.1_755371_756928_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|674aa|down_8|NZ_CP007605.1_757670_759692_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|196aa|down_9|NZ_CP007605.1_760865_761453_-	NA
GCF_000685705.1_ASM68570v1	NZ_CP007605	Helicobacter pylori strain BM012B chromosome, complete genome	3	1335817-1335956	3	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,cas3,DEDDh	Type V-U4	AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAGCCT	50	0	0	NA	NA	NA	1	1	TypeV-U4	c2c9_V-U4,cas3,DEDDh	NA,NA|102aa|down_0|NZ_CP007605.1_1336338_1336644_-,NA|111aa|down_2|NZ_CP007605.1_1340939_1341272_-,NA|93aa|down_6|NZ_CP007605.1_1346002_1346281_+,NA|228aa|down_8|NZ_CP007605.1_1347617_1348301_+	NA|597aa|up_9|NZ_CP007605.1_1322740_1324531_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|617aa|up_8|NZ_CP007605.1_1324545_1326396_-	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|260aa|up_7|NZ_CP007605.1_1326398_1327178_-	PRK06669, fliH, flagellar assembly protein H; Validated	NA|344aa|up_6|NZ_CP007605.1_1327164_1328196_-	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|568aa|up_5|NZ_CP007605.1_1328213_1329917_-	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|223aa|up_4|NZ_CP007605.1_1329960_1330629_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|539aa|up_3|NZ_CP007605.1_1330882_1332499_+	PRK05380, pyrG, CTP synthetase; Validated	NA|517aa|up_2|NZ_CP007605.1_1332507_1334058_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|294aa|up_1|NZ_CP007605.1_1334057_1334939_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|113aa|up_0|NZ_CP007605.1_1335438_1335777_-	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|102aa|down_0|NZ_CP007605.1_1336338_1336644_-	NA	NA|159aa|down_1|NZ_CP007605.1_1336831_1337308_-	sd00010, SLR, Sel1-like repeat	NA|111aa|down_2|NZ_CP007605.1_1340939_1341272_-	NA	NA|288aa|down_3|NZ_CP007605.1_1343105_1343969_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|218aa|down_4|NZ_CP007605.1_1344019_1344673_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	c2c9_V-U4|420aa|down_5|NZ_CP007605.1_1344647_1345907_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|93aa|down_6|NZ_CP007605.1_1346002_1346281_+	NA	NA|421aa|down_7|NZ_CP007605.1_1346282_1347545_+	COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]	NA|228aa|down_8|NZ_CP007605.1_1347617_1348301_+	NA	NA|226aa|down_9|NZ_CP007605.1_1348588_1349266_-	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]
GCF_000685705.1_ASM68570v1	NZ_CP007605	Helicobacter pylori strain BM012B chromosome, complete genome	4	1443771-1443855	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DEDDh	NA|512aa|up_8|NZ_CP007605.1_1433429_1434965_+,NA|436aa|down_0|NZ_CP007605.1_1445072_1446380_+	NA|345aa|up_9|NZ_CP007605.1_1431863_1432898_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NZ_CP007605.1_1433429_1434965_+	NA	NA|251aa|up_7|NZ_CP007605.1_1434985_1435738_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NZ_CP007605.1_1435927_1436800_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NZ_CP007605.1_1436869_1437496_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NZ_CP007605.1_1437514_1439341_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NZ_CP007605.1_1439407_1440685_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NZ_CP007605.1_1440695_1441379_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NZ_CP007605.1_1441365_1442376_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NZ_CP007605.1_1442545_1443592_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NZ_CP007605.1_1445072_1446380_+	NA	NA|221aa|down_1|NZ_CP007605.1_1446386_1447049_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NZ_CP007605.1_1447328_1447889_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NZ_CP007605.1_1447904_1448297_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NZ_CP007605.1_1448306_1449530_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NZ_CP007605.1_1449542_1450487_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NZ_CP007605.1_1450596_1451919_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NZ_CP007605.1_1451984_1452818_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NZ_CP007605.1_1452822_1454799_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|239aa|down_9|NZ_CP007605.1_1454868_1455585_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
