The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015880	Ensifer adhaerens strain Casida A chromosome, complete genome	4071185	1350363	1365826	4071185	tRNA	uncultured_Mediterranean_phage(83.33%)	15	NA	NA
WP_051659352.1|1350363_1351443_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	7.3e-23
WP_034796647.1|1351496_1352363_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.7	2.5e-34
WP_082572998.1|1352322_1353084_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.4	3.0e-39
WP_034796644.1|1353166_1354279_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	32.6	2.5e-10
WP_034796642.1|1354370_1354577_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.7	5.7e-09
WP_034796640.1|1354651_1355368_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_034796629.1|1355364_1356207_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	42.8	5.9e-44
WP_034796627.1|1356253_1357537_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.5	7.5e-99
WP_034796625.1|1357563_1358334_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	32.2	3.6e-24
WP_034796623.1|1358330_1358984_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.1	1.8e-16
WP_034796617.1|1359200_1359845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034796615.1|1360032_1361586_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	35.9	1.1e-14
WP_034796613.1|1361702_1362572_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_034796611.1|1362874_1363210_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	36.5	1.3e-10
WP_034796609.1|1363255_1365826_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.6	8.0e-60
>prophage 2
NZ_CP015880	Ensifer adhaerens strain Casida A chromosome, complete genome	4071185	2835057	2880426	4071185	integrase,tail,capsid,head,portal,terminase	Sinorhizobium_phage(89.36%)	60	2834796:2834813	2878946:2878963
2834796:2834813	attL	GGTGGTGCCCCATGCCGG	NA	NA	NA	NA
WP_034797750.1|2835057_2836671_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	50.9	9.9e-141
WP_034797752.1|2837079_2837463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034797754.1|2837462_2837852_+	hypothetical protein	NA	A0A291AUP7	Sinorhizobium_phage	50.0	8.5e-14
WP_156553026.1|2837831_2838776_-	ATP-dependent DNA ligase	NA	A0A076GD42	Sinorhizobium_phage	90.9	2.3e-166
WP_034797758.1|2839151_2839445_-	hypothetical protein	NA	A0A076G8I1	Sinorhizobium_phage	93.6	1.0e-51
WP_034797760.1|2839734_2839929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051659383.1|2839929_2840649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167550697.1|2840695_2841646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034797764.1|2841784_2842111_-	hypothetical protein	NA	A0A291AUN9	Sinorhizobium_phage	97.2	1.7e-55
WP_034797766.1|2842112_2842358_-	hypothetical protein	NA	J7F8X5	Agrobacterium_phage	67.2	9.7e-16
WP_034797768.1|2842254_2842473_-	hypothetical protein	NA	A0A291AUN8	Sinorhizobium_phage	83.3	2.0e-28
WP_034797770.1|2842474_2843362_-	chitinase	NA	A0A291AUN6	Sinorhizobium_phage	78.8	4.3e-130
WP_051659384.1|2843531_2843963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051659385.1|2844732_2845638_-	hypothetical protein	NA	A0A291AUN5	Sinorhizobium_phage	53.9	7.3e-93
WP_034797773.1|2845651_2847214_-	hypothetical protein	NA	A0A291AUN3	Sinorhizobium_phage	97.3	5.7e-312
WP_034797775.1|2847213_2847432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034797776.1|2847509_2847743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034797778.1|2847899_2850431_-	DUF1983 domain-containing protein	NA	A0A291AUN1	Sinorhizobium_phage	89.6	0.0e+00
WP_034797780.1|2850440_2850845_-	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	97.0	1.1e-72
WP_051659386.1|2851068_2851704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034797782.1|2851764_2852358_-	DUF2163 domain-containing protein	NA	A0A291AUM8	Sinorhizobium_phage	97.0	3.2e-105
WP_034797785.1|2852354_2853005_-	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	93.5	9.6e-111
WP_034797787.1|2853004_2854855_-|tail	tail tape measure protein	tail	A0A291AUM6	Sinorhizobium_phage	66.8	1.3e-208
WP_034797789.1|2854900_2855227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156553028.1|2855242_2855485_-|tail	phage tail assembly chaperone	tail	A0A291AUN4	Sinorhizobium_phage	84.8	2.8e-31
WP_034797791.1|2855484_2855889_-	hypothetical protein	NA	A0A291AUM7	Sinorhizobium_phage	86.2	4.6e-55
WP_034797794.1|2855900_2856311_-|tail	tail protein	tail	A0A291AUM5	Sinorhizobium_phage	77.9	9.8e-53
WP_034797796.1|2856343_2856808_-	hypothetical protein	NA	A0A291AUM4	Sinorhizobium_phage	84.4	3.2e-68
WP_034797798.1|2856809_2857103_-	hypothetical protein	NA	A0A291AUM3	Sinorhizobium_phage	91.6	1.8e-40
WP_034797800.1|2857104_2857434_-	hypothetical protein	NA	A0A291AUL9	Sinorhizobium_phage	94.4	4.8e-50
WP_034797802.1|2857430_2857877_-	hypothetical protein	NA	A0A291AUM1	Sinorhizobium_phage	91.5	3.0e-31
WP_034797804.1|2857957_2858986_-|capsid	major capsid protein	capsid	A0A291AUL7	Sinorhizobium_phage	98.5	9.6e-198
WP_034797806.1|2859014_2859371_-|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	97.5	9.1e-55
WP_034797809.1|2859375_2859930_-	hypothetical protein	NA	A0A291AUL6	Sinorhizobium_phage	95.1	2.9e-60
WP_034797811.1|2859954_2860863_-	S49 family peptidase	NA	A0A291AUM2	Sinorhizobium_phage	98.0	5.5e-165
WP_034797813.1|2860859_2862581_-|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	98.3	0.0e+00
WP_034797815.1|2862577_2862814_-|head,tail	head-to-tail joining protein	head,tail	A0A291AUL5	Sinorhizobium_phage	96.2	9.3e-32
WP_034797817.1|2862822_2864868_-|terminase	terminase	terminase	A0A291AUK9	Sinorhizobium_phage	95.4	0.0e+00
WP_034797819.1|2864864_2865527_-	hypothetical protein	NA	A0A291AUL0	Sinorhizobium_phage	91.3	4.1e-101
WP_034797821.1|2865671_2866418_-	hypothetical protein	NA	A0A291AUL1	Sinorhizobium_phage	96.0	1.0e-132
WP_082936530.1|2866649_2867291_-	antitermination protein NusG	NA	A0A291AUL3	Sinorhizobium_phage	69.5	2.0e-81
WP_156552983.1|2867280_2868546_-	hypothetical protein	NA	A0A291AUK7	Sinorhizobium_phage	94.8	2.2e-228
WP_064817020.1|2868542_2869553_-	phosphoadenosine phosphosulfate reductase family protein	NA	B7SYG0	Stenotrophomonas_phage	47.3	2.7e-80
WP_034797829.1|2869621_2870329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034797831.1|2870346_2870643_-	hypothetical protein	NA	A0A291AUK8	Sinorhizobium_phage	93.5	4.3e-42
WP_034797832.1|2870639_2870840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167550706.1|2870836_2872267_-	S-adenosylmethionine-binding protein	NA	A0A291AUK6	Sinorhizobium_phage	63.1	1.2e-28
WP_167550698.1|2872362_2872515_-	hypothetical protein	NA	A0A291AUK4	Sinorhizobium_phage	90.0	6.4e-18
WP_034797836.1|2872514_2873003_-	hypothetical protein	NA	A0A291AUJ7	Sinorhizobium_phage	96.3	1.9e-79
WP_034797838.1|2873230_2873500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034797844.1|2874185_2874854_+	helix-turn-helix domain-containing protein	NA	A0A1X9HW95	Ruegeria_phage	36.2	7.2e-21
WP_034797846.1|2875074_2875290_+	hypothetical protein	NA	A0A291AUK1	Sinorhizobium_phage	80.3	8.5e-24
WP_167550699.1|2875369_2875543_+	hypothetical protein	NA	A0A291AUK2	Sinorhizobium_phage	87.7	1.2e-20
WP_051659387.1|2875542_2875869_+	hypothetical protein	NA	A0A291AUJ8	Sinorhizobium_phage	89.8	4.3e-51
WP_034797848.1|2875865_2876195_+	hypothetical protein	NA	A0A291AUR1	Sinorhizobium_phage	83.5	3.2e-46
WP_034797850.1|2876191_2876581_+	DUF4326 domain-containing protein	NA	A0A291AUJ3	Sinorhizobium_phage	80.8	7.3e-58
WP_034797854.1|2877101_2877476_+	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	83.7	3.2e-58
WP_051659388.1|2877764_2878856_+|integrase	site-specific integrase	integrase	A0A291AUF0	Sinorhizobium_phage	38.5	3.3e-55
WP_034797856.1|2879244_2879757_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
2878946:2878963	attR	GGTGGTGCCCCATGCCGG	NA	NA	NA	NA
WP_034797858.1|2879868_2880426_-	HNH endonuclease	NA	A0A223W0A5	Agrobacterium_phage	42.6	7.3e-35
>prophage 3
NZ_CP015880	Ensifer adhaerens strain Casida A chromosome, complete genome	4071185	3003834	3012345	4071185	integrase	Sinorhizobium_phage(25.0%)	16	3009537:3009555	3021351:3021369
WP_156553003.1|3003834_3004005_+	hypothetical protein	NA	A0A076G8E1	Sinorhizobium_phage	76.1	4.5e-12
WP_034806299.1|3004004_3004280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_167550702.1|3004321_3004654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034806677.1|3004703_3005063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051659734.1|3005151_3005907_+	hypothetical protein	NA	K4NWX3	Pseudomonas_phage	50.0	4.7e-53
WP_051659733.1|3005899_3006565_+	YqaJ viral recombinase family protein	NA	A0A076G6X1	Sinorhizobium_phage	77.5	2.1e-92
WP_082936519.1|3006564_3007020_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	63.8	4.3e-49
WP_051659732.1|3007023_3007482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082936520.1|3007650_3008025_+	HNH endonuclease	NA	A0A141GF07	Brucella_phage	57.8	5.8e-28
WP_034806292.1|3008065_3008329_+	hypothetical protein	NA	A0A1P8DIX1	Virus_Rctr197k	52.6	1.2e-14
WP_034806288.1|3008330_3009266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034806285.1|3009262_3010054_+	DNA cytosine methyltransferase	NA	A0A1B1IRC8	uncultured_Mediterranean_phage	46.9	1.5e-73
3009537:3009555	attL	AAGGCCATGCCGACGAACG	NA	NA	NA	NA
WP_034806282.1|3010050_3010413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034806279.1|3010405_3010711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034806275.1|3010707_3010914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034806272.1|3011340_3012345_+|integrase	site-specific integrase	integrase	A7J266	Streptococcus_phage	28.3	1.2e-06
3021351:3021369	attR	CGTTCGTCGGCATGGCCTT	NA	NA	NA	NA
>prophage 1
NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1736943	1032731	1039754	1736943		Escherichia_phage(50.0%)	7	NA	NA
WP_034800622.1|1032731_1033601_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	57.6	9.5e-90
WP_034800638.1|1033616_1034504_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.1	1.2e-34
WP_034800620.1|1034512_1035574_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D8EQC0	Escherichia_phage	50.4	6.6e-93
WP_034800618.1|1035626_1036181_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	41.8	2.8e-34
WP_034800616.1|1036412_1037648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034800614.1|1037652_1038822_-	acylneuraminate cytidylyltransferase	NA	A0A1B1IVD3	uncultured_Mediterranean_phage	29.6	6.7e-06
WP_034800612.1|1038821_1039754_-	N-acetylneuraminate synthase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	27.7	5.5e-19
>prophage 2
NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1736943	1165051	1174092	1736943		Synechococcus_phage(33.33%)	8	NA	NA
WP_082936560.1|1165051_1166209_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	25.0	7.9e-15
WP_051659418.1|1166198_1167449_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	C7U074	Ostreococcus_tauri_virus	43.7	5.8e-72
WP_034798286.1|1167451_1168675_+	class I SAM-dependent methyltransferase	NA	A0A1V0SJ68	Klosneuvirus	29.9	2.3e-41
WP_034798288.1|1168768_1169749_+	NAD(P)-dependent oxidoreductase	NA	A0A0E3FNQ3	Synechococcus_phage	25.6	1.8e-12
WP_156553063.1|1169763_1170777_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	33.3	1.2e-43
WP_051659419.1|1170748_1171186_+	GtrA family protein	NA	NA	NA	NA	NA
WP_034798293.1|1171303_1172203_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_034798295.1|1172202_1174092_+	sulfate adenylyltransferase subunit CysN	NA	A0A2K9L4R9	Tupanvirus	43.6	6.6e-27
>prophage 1
NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	1459374	243259	249141	1459374	transposase	Sinorhizobium_phage(50.0%)	7	NA	NA
WP_156553061.1|243259_244386_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	62.0	1.5e-90
WP_051659584.1|244764_245046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143106294.1|245383_245590_-	hypothetical protein	NA	A0A291AUJ1	Sinorhizobium_phage	61.5	3.4e-06
WP_082572772.1|245627_246077_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A068CC96	Rhizobium_phage	82.1	5.1e-55
WP_034801528.1|246194_246506_+	hypothetical protein	NA	R9TN87	Rhizobium_phage	46.1	9.8e-13
WP_034801529.1|248108_248375_-	hypothetical protein	NA	A0A076G717	Sinorhizobium_phage	85.2	2.9e-37
WP_034801532.1|248949_249141_+	helix-hairpin-helix domain-containing protein	NA	A0A076G6K2	Sinorhizobium_phage	82.5	3.4e-24
