The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007809	Mycobacterium tuberculosis strain KIT87190 chromosome, complete genome	4410788	2933139	2971412	4410788	tRNA,head,integrase,terminase,protease,capsid	Mycobacterium_phage(30.0%)	46	2961941:2961968	2971565:2971592
WP_003413486.1|2933139_2935218_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2935326_2935554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413569.1|2937281_2937782_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2937798_2938239_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2938385_2939063_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2939047_2939401_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2939413_2939839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2939835_2940510_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2940587_2941409_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2941544_2942438_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_003413594.1|2942440_2943259_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2943273_2944455_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2944513_2944945_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2945458_2946700_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2947009_2947372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2947718_2948843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025687038.1|2948844_2949384_+	archease	NA	NA	NA	NA	NA
WP_003413616.1|2949523_2950822_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2950860_2951142_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2951286_2951772_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|2951798_2952053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038436272.1|2952056_2954393_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2954421_2954664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2954664_2955342_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2955537_2956194_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2956356_2956803_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2956977_2957310_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2957429_2957789_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2957890_2958349_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2958484_2958865_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2958861_2960358_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2960592_2960784_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
2961941:2961968	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2962074_2962506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2962502_2963501_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2963514_2963979_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003908028.1|2963966_2964218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2964388_2965828_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2965835_2966369_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2966521_2967148_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2967179_2967503_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2967582_2967828_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2967824_2969252_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2969253_2969646_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2969642_2969903_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2969919_2970282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2970284_2971412_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2971565:2971592	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP007809	Mycobacterium tuberculosis strain KIT87190 chromosome, complete genome	4410788	3700660	3793110	4410788	protease,tRNA,transposase	Pandoravirus(33.33%)	54	NA	NA
WP_009937401.1|3700660_3700822_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3700843_3702373_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3702305_3703244_-	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003902446.1|3703252_3704620_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3704688_3705906_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3706001_3707510_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3707506_3708658_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3708848_3709694_-|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003900026.1|3710168_3710609_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3710642_3711512_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3711532_3712543_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003905041.1|3712815_3713460_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3713526_3714756_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3715038_3716388_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3716399_3717539_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3717535_3718267_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_078417291.1|3718275_3729207_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3739652_3739910_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3740165_3749639_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3750264_3750711_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3750747_3751488_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3751782_3752070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3763799_3764594_-	BBE domain-containing protein	NA	NA	NA	NA	NA
WP_003417739.1|3764675_3765047_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3764944_3765163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3765189_3765450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3765564_3765954_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3765967_3766261_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3766257_3767103_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3767226_3767502_+	type II toxin-antitoxin system antitoxin RelJ	NA	NA	NA	NA	NA
WP_003417760.1|3767498_3767756_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3767797_3768988_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3769104_3769473_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3769469_3770021_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3770027_3770609_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3770589_3770958_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3770935_3771328_-	roadblock/LC7 domain-containing protein	NA	NA	NA	NA	NA
WP_003901616.1|3771324_3773955_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003901617.1|3774190_3774655_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3775021_3776797_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3776797_3777442_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3777440_3777875_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3777963_3781203_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3781394_3782735_+	diacyglycerol O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3782776_3783952_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3784005_3784110_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3784188_3784830_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3784830_3785079_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3785083_3786511_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3786618_3787272_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3787310_3788816_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003902459.1|3788820_3789711_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003918607.1|3789719_3791558_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3791849_3793110_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
