assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000725405.1_ASM72540v1	NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	1	520320-520446	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	Orphan	GAGCGCGCGTCGCGCCGACGGAGTCCCTCCGCCCGTTCCGACAGCTC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	NA|322aa|up_2|NZ_CP008889.1_516729_517695_+,NA|140aa|down_4|NZ_CP008889.1_525714_526134_-,NA|46aa|down_6|NZ_CP008889.1_528390_528528_+	NA|403aa|up_9|NZ_CP008889.1_508218_509427_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|235aa|up_8|NZ_CP008889.1_509497_510202_+	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase	NA|494aa|up_7|NZ_CP008889.1_510198_511680_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|299aa|up_6|NZ_CP008889.1_511700_512597_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|567aa|up_5|NZ_CP008889.1_512593_514294_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|226aa|up_4|NZ_CP008889.1_514397_515075_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|521aa|up_3|NZ_CP008889.1_515082_516645_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|322aa|up_2|NZ_CP008889.1_516729_517695_+	NA	NA|68aa|up_1|NZ_CP008889.1_517992_518196_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|473aa|up_0|NZ_CP008889.1_518366_519785_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|498aa|down_0|NZ_CP008889.1_520539_522033_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|177aa|down_1|NZ_CP008889.1_522440_522971_-	pfam04138, GtrA, GtrA-like protein	NA|503aa|down_2|NZ_CP008889.1_522967_524476_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|235aa|down_3|NZ_CP008889.1_524629_525334_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|140aa|down_4|NZ_CP008889.1_525714_526134_-	NA	NA|576aa|down_5|NZ_CP008889.1_526345_528073_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|46aa|down_6|NZ_CP008889.1_528390_528528_+	NA	NA|242aa|down_7|NZ_CP008889.1_528722_529448_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|506aa|down_8|NZ_CP008889.1_529506_531024_+	PRK00047, glpK, glycerol kinase GlpK	NA|268aa|down_9|NZ_CP008889.1_531141_531945_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
GCF_000725405.1_ASM72540v1	NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	2	873961-874417	1	PILER-CR	no	c2c9_V-U4	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	Type V-U4	GTCGGCCCCGCGCACGCGGAGATGAGCCCG	30	0	0	NA	NA	NA	7	7	TypeV-U4	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	NA|130aa|up_7|NZ_CP008889.1_862848_863238_-,NA|141aa|down_8|NZ_CP008889.1_884265_884688_-,NA|88aa|down_9|NZ_CP008889.1_884974_885238_+	NA|140aa|up_9|NZ_CP008889.1_860337_860757_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|402aa|up_8|NZ_CP008889.1_861629_862835_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|130aa|up_7|NZ_CP008889.1_862848_863238_-	NA	NA|531aa|up_6|NZ_CP008889.1_863546_865139_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|427aa|up_5|NZ_CP008889.1_867323_868604_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|355aa|up_4|NZ_CP008889.1_868738_869803_-	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|387aa|up_3|NZ_CP008889.1_869806_870967_-	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit	NA|293aa|up_2|NZ_CP008889.1_871165_872044_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|263aa|up_1|NZ_CP008889.1_872175_872964_+	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	c2c9_V-U4|260aa|up_0|NZ_CP008889.1_873125_873905_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|167aa|down_0|NZ_CP008889.1_875784_876285_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|159aa|down_1|NZ_CP008889.1_876418_876895_-	pfam12688, TPR_5, Tetratrico peptide repeat	NA|136aa|down_2|NZ_CP008889.1_876990_877398_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|371aa|down_3|NZ_CP008889.1_878638_879751_-	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain	NA|575aa|down_4|NZ_CP008889.1_879772_881497_-	PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated	NA|185aa|down_5|NZ_CP008889.1_881496_882051_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|382aa|down_6|NZ_CP008889.1_882218_883364_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|80aa|down_7|NZ_CP008889.1_883748_883988_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|141aa|down_8|NZ_CP008889.1_884265_884688_-	NA	NA|88aa|down_9|NZ_CP008889.1_884974_885238_+	NA
GCF_000725405.1_ASM72540v1	NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	3	1669549-1669681	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	Orphan	ACCGCACCTGGATGCGTGGCGTGGGCAGGCCTGGCGAC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	NA,NA	NA|399aa|up_9|NZ_CP008889.1_1655845_1657042_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|336aa|up_8|NZ_CP008889.1_1657054_1658062_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|326aa|up_7|NZ_CP008889.1_1658217_1659195_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|328aa|up_6|NZ_CP008889.1_1659280_1660264_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|298aa|up_5|NZ_CP008889.1_1660260_1661154_-	PRK05416, PRK05416, RNase adapter RapZ	NA|668aa|up_4|NZ_CP008889.1_1661150_1663154_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|137aa|up_3|NZ_CP008889.1_1663153_1663564_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|1020aa|up_2|NZ_CP008889.1_1663563_1666623_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|611aa|up_1|NZ_CP008889.1_1666781_1668614_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|228aa|up_0|NZ_CP008889.1_1668791_1669475_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|106aa|down_0|NZ_CP008889.1_1669938_1670256_-	pfam12823, DUF3817, Domain of unknown function (DUF3817)	NA|535aa|down_1|NZ_CP008889.1_1670314_1671919_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|137aa|down_2|NZ_CP008889.1_1672134_1672545_+	cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|74aa|down_3|NZ_CP008889.1_1672614_1672836_+	cd17584, REC_typeB_ARR-like, phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains	NA|702aa|down_4|NZ_CP008889.1_1672884_1674990_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|196aa|down_5|NZ_CP008889.1_1675038_1675626_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|788aa|down_6|NZ_CP008889.1_1675636_1678000_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|387aa|down_7|NZ_CP008889.1_1678126_1679287_-	PRK06348, PRK06348, pyridoxal phosphate-dependent aminotransferase	NA|484aa|down_8|NZ_CP008889.1_1679385_1680837_+	PRK00784, PRK00784, cobyric acid synthase	NA|263aa|down_9|NZ_CP008889.1_1680840_1681629_+	cd11643, Precorrin-6A-synthase, Precorrin-6A synthase (also named CobF)
GCF_000725405.1_ASM72540v1	NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	4	2681786-2681925	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	Orphan	ATCAGATATAGACAAGTAGATGCAGCCCTTGCGCACGGTACGGGC	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	NA|85aa|up_8|NZ_CP008889.1_2673608_2673863_-,NA|73aa|down_9|NZ_CP008889.1_2692258_2692477_+	NA|112aa|up_9|NZ_CP008889.1_2673111_2673447_-	pfam11774, Lsr2, Lsr2	NA|85aa|up_8|NZ_CP008889.1_2673608_2673863_-	NA	NA|286aa|up_7|NZ_CP008889.1_2673934_2674792_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|320aa|up_6|NZ_CP008889.1_2674882_2675842_-	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|186aa|up_5|NZ_CP008889.1_2676033_2676591_-	COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]	NA|383aa|up_4|NZ_CP008889.1_2676661_2677810_+	pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase	NA|165aa|up_3|NZ_CP008889.1_2677859_2678354_+	PRK15049, PRK15049, L-asparagine permease	NA|181aa|up_2|NZ_CP008889.1_2678387_2678930_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|362aa|up_1|NZ_CP008889.1_2679013_2680099_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|392aa|up_0|NZ_CP008889.1_2680534_2681710_+	COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]	NA|376aa|down_0|NZ_CP008889.1_2682131_2683259_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|178aa|down_1|NZ_CP008889.1_2683441_2683975_-	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|324aa|down_2|NZ_CP008889.1_2683971_2684943_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|328aa|down_3|NZ_CP008889.1_2684939_2685923_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|201aa|down_4|NZ_CP008889.1_2685919_2686522_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|683aa|down_5|NZ_CP008889.1_2686518_2688567_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|184aa|down_6|NZ_CP008889.1_2688804_2689356_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|354aa|down_7|NZ_CP008889.1_2689429_2690491_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|352aa|down_8|NZ_CP008889.1_2690487_2691543_-	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|73aa|down_9|NZ_CP008889.1_2692258_2692477_+	NA
GCF_000725405.1_ASM72540v1	NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	5	2837449-2837550	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	Orphan	GGCGAGAACGCCACGGACGCGCAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	NA,NA|80aa|down_2|NZ_CP008889.1_2838835_2839075_+	NA|401aa|up_9|NZ_CP008889.1_2822888_2824091_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|99aa|up_8|NZ_CP008889.1_2824087_2824384_-	PRK12863, PRK12863, YciI-like protein; Reviewed	NA|578aa|up_7|NZ_CP008889.1_2824502_2826236_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|1245aa|up_6|NZ_CP008889.1_2826454_2830189_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|248aa|up_5|NZ_CP008889.1_2830375_2831119_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|166aa|up_4|NZ_CP008889.1_2831479_2831977_+	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|450aa|up_3|NZ_CP008889.1_2832182_2833532_+	PRK12372, PRK12372, ribonuclease III; Reviewed	NA|146aa|up_2|NZ_CP008889.1_2833701_2834139_+	pfam06445, GyrI-like, GyrI-like small molecule binding domain	NA|351aa|up_1|NZ_CP008889.1_2834543_2835596_+	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|419aa|up_0|NZ_CP008889.1_2835783_2837040_+	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria	NA|123aa|down_0|NZ_CP008889.1_2838089_2838458_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|75aa|down_1|NZ_CP008889.1_2838554_2838779_-	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|80aa|down_2|NZ_CP008889.1_2838835_2839075_+	NA	NA|275aa|down_3|NZ_CP008889.1_2839749_2840574_+	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|287aa|down_4|NZ_CP008889.1_2842094_2842955_-	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only]	NA|315aa|down_5|NZ_CP008889.1_2843002_2843947_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|169aa|down_6|NZ_CP008889.1_2843970_2844477_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|231aa|down_7|NZ_CP008889.1_2844473_2845166_+	PRK10958, PRK10958, leucine export protein LeuE; Provisional	NA|602aa|down_8|NZ_CP008889.1_2845273_2847079_-	PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated	NA|259aa|down_9|NZ_CP008889.1_2847242_2848019_+	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_000725405.1_ASM72540v1	NZ_CP008889	Dermacoccus nishinomiyaensis strain M25 chromosome, complete genome	6	2998656-2998730	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	Orphan	CAAGTGCACCCGGGTGCATCGGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,c2c9_V-U4,DinG,cas4,WYL	NA|186aa|up_2|NZ_CP008889.1_2996144_2996702_-,NA|109aa|up_1|NZ_CP008889.1_2997313_2997640_+,NA|197aa|down_4|NZ_CP008889.1_3003430_3004021_-,NA|214aa|down_5|NZ_CP008889.1_3004139_3004781_-	NA|331aa|up_9|NZ_CP008889.1_2987530_2988523_-	COG0685, MetF, 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]	NA|174aa|up_8|NZ_CP008889.1_2988847_2989369_-	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|441aa|up_7|NZ_CP008889.1_2989485_2990808_-	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain	NA|582aa|up_6|NZ_CP008889.1_2991066_2992812_-	PRK06546, PRK06546, pyruvate dehydrogenase; Provisional	NA|354aa|up_5|NZ_CP008889.1_2993032_2994094_-	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|196aa|up_4|NZ_CP008889.1_2994499_2995087_-	pfam04234, CopC, CopC domain	NA|232aa|up_3|NZ_CP008889.1_2995113_2995809_-	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|186aa|up_2|NZ_CP008889.1_2996144_2996702_-	NA	NA|109aa|up_1|NZ_CP008889.1_2997313_2997640_+	NA	NA|293aa|up_0|NZ_CP008889.1_2997737_2998616_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|361aa|down_0|NZ_CP008889.1_2998757_2999840_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|215aa|down_1|NZ_CP008889.1_2999957_3000602_+	pfam09726, Macoilin, Macoilin family	NA|339aa|down_2|NZ_CP008889.1_3000681_3001698_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|421aa|down_3|NZ_CP008889.1_3001977_3003240_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|197aa|down_4|NZ_CP008889.1_3003430_3004021_-	NA	NA|214aa|down_5|NZ_CP008889.1_3004139_3004781_-	NA	NA|150aa|down_6|NZ_CP008889.1_3006325_3006775_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|201aa|down_7|NZ_CP008889.1_3006898_3007501_-	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|286aa|down_8|NZ_CP008889.1_3007670_3008528_+	pfam05050, Methyltransf_21, Methyltransferase FkbM domain	NA|269aa|down_9|NZ_CP008889.1_3008593_3009400_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
