assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000730205.1_ASM73020v1	NZ_CP008885	Bifidobacterium longum strain BXY01, complete genome	1	322607-322692	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA|186aa|up_5|NZ_CP008885.1_315657_316215_+,NA|323aa|up_3|NZ_CP008885.1_317591_318560_-,NA|681aa|down_5|NZ_CP008885.1_329328_331371_+	NA|245aa|up_9|NZ_CP008885.1_310081_310816_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|889aa|up_8|NZ_CP008885.1_310899_313566_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|94aa|up_7|NZ_CP008885.1_313676_313958_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|468aa|up_6|NZ_CP008885.1_314185_315589_+	pfam02646, RmuC, RmuC family	NA|186aa|up_5|NZ_CP008885.1_315657_316215_+	NA	NA|283aa|up_4|NZ_CP008885.1_316308_317157_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|323aa|up_3|NZ_CP008885.1_317591_318560_-	NA	NA|100aa|up_2|NZ_CP008885.1_319142_319442_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NZ_CP008885.1_319445_320987_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NZ_CP008885.1_321011_322511_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|346aa|down_0|NZ_CP008885.1_322833_323871_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NZ_CP008885.1_323881_324196_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|538aa|down_2|NZ_CP008885.1_324621_326235_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_3|NZ_CP008885.1_326440_328510_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_4|NZ_CP008885.1_328817_329207_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|681aa|down_5|NZ_CP008885.1_329328_331371_+	NA	NA|947aa|down_6|NZ_CP008885.1_331842_334683_-	NF000540, alt_ValS, valine--tRNA ligase	NA|489aa|down_7|NZ_CP008885.1_334721_336188_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_8|NZ_CP008885.1_336309_336996_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|267aa|down_9|NZ_CP008885.1_337054_337855_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000730205.1_ASM73020v1	NZ_CP008885	Bifidobacterium longum strain BXY01, complete genome	2	1589247-1589402	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	AGCGTCGGCCTCGGAGCGGGTACG	24	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA,NA|98aa|down_5|NZ_CP008885.1_1595530_1595824_+	NA|461aa|up_9|NZ_CP008885.1_1568901_1570284_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|484aa|up_8|NZ_CP008885.1_1570411_1571863_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|276aa|up_7|NZ_CP008885.1_1572186_1573014_+	cd19126, AKR_AKR5A_5G, AKR5A and AKR5G families of aldo-keto reductase (AKR)	NA|167aa|up_6|NZ_CP008885.1_1579137_1579638_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|626aa|up_5|NZ_CP008885.1_1579733_1581611_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|145aa|up_4|NZ_CP008885.1_1581816_1582251_-	pfam13811, DUF4186, Domain of unknown function (DUF4186)	NA|1190aa|up_3|NZ_CP008885.1_1582339_1585909_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|289aa|up_2|NZ_CP008885.1_1585931_1586798_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|321aa|up_1|NZ_CP008885.1_1587366_1588329_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|183aa|up_0|NZ_CP008885.1_1588328_1588877_-	PRK14771, PRK14771, lipoprotein signal peptidase; Provisional	NA|101aa|down_0|NZ_CP008885.1_1590417_1590720_-	pfam02325, YGGT, YGGT family	NA|160aa|down_1|NZ_CP008885.1_1590841_1591321_-	pfam04472, SepF, Cell division protein SepF	NA|401aa|down_2|NZ_CP008885.1_1591333_1592536_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|415aa|down_3|NZ_CP008885.1_1592647_1593892_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|491aa|down_4|NZ_CP008885.1_1594042_1595515_-	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|98aa|down_5|NZ_CP008885.1_1595530_1595824_+	NA	NA|315aa|down_6|NZ_CP008885.1_1595949_1596894_+	cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz	NA|918aa|down_7|NZ_CP008885.1_1596976_1599730_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|403aa|down_8|NZ_CP008885.1_1599766_1600975_-	COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	NA|270aa|down_9|NZ_CP008885.1_1601101_1601911_+	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase
GCF_000730205.1_ASM73020v1	NZ_CP008885	Bifidobacterium longum strain BXY01, complete genome	3	2055205-2055290	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA|30aa|up_5|NZ_CP008885.1_2047290_2047380_-,NA|193aa|up_4|NZ_CP008885.1_2047571_2048150_-,NA|274aa|down_1|NZ_CP008885.1_2057277_2058099_+,NA|104aa|down_6|NZ_CP008885.1_2065248_2065560_+	NA|141aa|up_9|NZ_CP008885.1_2042614_2043037_+	pfam02082, Rrf2, Transcriptional regulator	NA|539aa|up_8|NZ_CP008885.1_2043170_2044787_+	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|329aa|up_7|NZ_CP008885.1_2045324_2046311_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_CP008885.1_2046441_2047140_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_CP008885.1_2047290_2047380_-	NA	NA|193aa|up_4|NZ_CP008885.1_2047571_2048150_-	NA	NA|513aa|up_3|NZ_CP008885.1_2048331_2049870_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_CP008885.1_2049884_2051009_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_CP008885.1_2051106_2052270_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|159aa|up_0|NZ_CP008885.1_2052271_2052748_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_CP008885.1_2056095_2057163_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|274aa|down_1|NZ_CP008885.1_2057277_2058099_+	NA	NA|348aa|down_2|NZ_CP008885.1_2058139_2059183_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NZ_CP008885.1_2059715_2061284_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NZ_CP008885.1_2062093_2062894_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NZ_CP008885.1_2063100_2065281_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|104aa|down_6|NZ_CP008885.1_2065248_2065560_+	NA	NA|304aa|down_7|NZ_CP008885.1_2065556_2066468_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_8|NZ_CP008885.1_2066549_2067092_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_9|NZ_CP008885.1_2067191_2068187_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_000730205.1_ASM73020v1	NZ_CP008885	Bifidobacterium longum strain BXY01, complete genome	4	2191862-2191936	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	TCTGTCCCGGTTGCCCCAAAAGAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA|59aa|up_0|NZ_CP008885.1_2190869_2191046_+,NA	NA|315aa|up_9|NZ_CP008885.1_2180350_2181295_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|298aa|up_8|NZ_CP008885.1_2181371_2182265_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP008885.1_2182376_2183144_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|421aa|up_6|NZ_CP008885.1_2183145_2184408_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|264aa|up_5|NZ_CP008885.1_2184597_2185389_-	PRK08628, PRK08628, SDR family oxidoreductase	NA|428aa|up_4|NZ_CP008885.1_2185529_2186813_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|343aa|up_3|NZ_CP008885.1_2187024_2188053_+	cd06296, PBP1_CatR-like, ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation	NA|483aa|up_2|NZ_CP008885.1_2188034_2189483_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|317aa|up_1|NZ_CP008885.1_2189479_2190430_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NZ_CP008885.1_2190869_2191046_+	NA	NA|485aa|down_0|NZ_CP008885.1_2192041_2193496_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NZ_CP008885.1_2193632_2194745_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NZ_CP008885.1_2194851_2196168_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NZ_CP008885.1_2196327_2197920_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|621aa|down_4|NZ_CP008885.1_2197922_2199785_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|311aa|down_5|NZ_CP008885.1_2199873_2200806_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_6|NZ_CP008885.1_2200899_2202153_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_7|NZ_CP008885.1_2202198_2203524_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|449aa|down_8|NZ_CP008885.1_2203773_2205120_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|376aa|down_9|NZ_CP008885.1_2205323_2206451_-	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain
