assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000732355.1_ASM73235v1	NZ_CP008921	Streptococcus suis 6407 chromosome, complete genome	1	200966-201075	1	CRISPRCasFinder	no		PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	Orphan	ACTGTTGACCTAACAACCAATCAAGT	26	0	0	NA	NA	NA	1	1	Orphan	PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	NA,NA|104aa|down_3|NZ_CP008921.1_206980_207292_+	NA|261aa|up_9|NZ_CP008921.1_190098_190881_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|344aa|up_8|NZ_CP008921.1_190919_191951_+	cd13561, PBP2_SsuA_like_4, Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold	NA|270aa|up_7|NZ_CP008921.1_192044_192854_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|60aa|up_6|NZ_CP008921.1_193019_193199_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|248aa|up_5|NZ_CP008921.1_193347_194091_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|314aa|up_4|NZ_CP008921.1_194147_195089_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|830aa|up_3|NZ_CP008921.1_195127_197617_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|210aa|up_2|NZ_CP008921.1_197680_198310_-	TIGR02227, Inactive_signal_peptidase_IA	NA|297aa|up_1|NZ_CP008921.1_198319_199210_-	PRK00996, PRK00996, ribonuclease HIII; Provisional	NA|328aa|up_0|NZ_CP008921.1_199294_200278_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|542aa|down_0|NZ_CP008921.1_202275_203901_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|665aa|down_1|NZ_CP008921.1_203981_205976_-	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|238aa|down_2|NZ_CP008921.1_206209_206923_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|104aa|down_3|NZ_CP008921.1_206980_207292_+	NA	NA|183aa|down_4|NZ_CP008921.1_207288_207837_+	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|778aa|down_5|NZ_CP008921.1_207998_210332_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|105aa|down_6|NZ_CP008921.1_211430_211745_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|510aa|down_7|NZ_CP008921.1_211895_213425_+	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|313aa|down_8|NZ_CP008921.1_213464_214403_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|662aa|down_9|NZ_CP008921.1_215552_217538_+	COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000732355.1_ASM73235v1	NZ_CP008921	Streptococcus suis 6407 chromosome, complete genome	2	301184-301262	2	CRISPRCasFinder	no		PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	Orphan	AAAGGTTCGGGGAACCTTTGGAGG	24	0	0	NA	NA	NA	1	1	Orphan	PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	NA,NA|175aa|down_2|NZ_CP008921.1_302663_303188_-	NA|89aa|up_9|NZ_CP008921.1_289977_290244_+	PRK00194, PRK00194, ACT domain-containing protein	NA|446aa|up_8|NZ_CP008921.1_290255_291593_+	PRK05313, PRK05313, hypothetical protein; Provisional	NA|232aa|up_7|NZ_CP008921.1_291669_292365_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|345aa|up_6|NZ_CP008921.1_292587_293622_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|171aa|up_5|NZ_CP008921.1_293634_294147_+	PRK14156, PRK14156, heat shock protein GrpE; Provisional	NA|608aa|up_4|NZ_CP008921.1_294243_296067_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|379aa|up_3|NZ_CP008921.1_296436_297573_+	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|276aa|up_2|NZ_CP008921.1_297849_298677_+	cd16443, LplA, lipoate-protein ligase	NA|483aa|up_1|NZ_CP008921.1_298686_300135_+	PRK06529, PRK06529, amidase; Provisional	NA|292aa|up_0|NZ_CP008921.1_300258_301134_+	cd01003, PBP2_YckB, Substrate binding domain of an ABC cystine transporter; the type 2 periplasmic binding protein fold	NA|224aa|down_0|NZ_CP008921.1_301656_302328_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|70aa|down_1|NZ_CP008921.1_302452_302662_-	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|175aa|down_2|NZ_CP008921.1_302663_303188_-	NA	NA|623aa|down_3|NZ_CP008921.1_303323_305192_-	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|250aa|down_4|NZ_CP008921.1_305975_306725_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|254aa|down_5|NZ_CP008921.1_306714_307476_+	PRK12413, PRK12413, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA|162aa|down_6|NZ_CP008921.1_307465_307951_+	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|189aa|down_7|NZ_CP008921.1_307931_308498_+	PRK13690, PRK13690, hypothetical protein; Provisional	NA|205aa|down_8|NZ_CP008921.1_308497_309112_+	pfam07081, DUF1349, Protein of unknown function (DUF1349)	NA|144aa|down_9|NZ_CP008921.1_310419_310851_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]
GCF_000732355.1_ASM73235v1	NZ_CP008921	Streptococcus suis 6407 chromosome, complete genome	3	1525999-1526692	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9,RT	PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	Type II-A,Type II-C,Type II-B	GTTTTGAAACCATTCGAAACAGCACAGCTCTAAAAC,GTTTTGAAACCATTCGAAACAGCACAGCTCTAAAAC,GTTTTGAAACCATTCGAAACAGCACAGCTCTAAAAC	36,36,36	1	1	1526298-1526327	NZ_CP008921.1_1634544-1634515	II-A:II-A:II-A	10,9,7	10	TypeII-A,TypeII-C,TypeII-B	PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	NA,NA|359aa|down_5|NZ_CP008921.1_1535295_1536372_+,NA|103aa|down_6|NZ_CP008921.1_1536493_1536802_-	NA|206aa|up_9|NZ_CP008921.1_1515547_1516165_-	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|247aa|up_8|NZ_CP008921.1_1516151_1516892_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|376aa|up_7|NZ_CP008921.1_1517122_1518250_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|193aa|up_6|NZ_CP008921.1_1518344_1518923_+	pfam04892, VanZ, VanZ like family	NA|756aa|up_5|NZ_CP008921.1_1519057_1521325_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|238aa|up_4|NZ_CP008921.1_1521500_1522214_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|270aa|up_3|NZ_CP008921.1_1522246_1523056_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|119aa|up_2|NZ_CP008921.1_1523067_1523424_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|404aa|up_1|NZ_CP008921.1_1523423_1524635_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|225aa|up_0|NZ_CP008921.1_1524963_1525638_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	csn2|222aa|down_0|NZ_CP008921.1_1526790_1527456_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|111aa|down_1|NZ_CP008921.1_1527457_1527790_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP008921.1_1527786_1528653_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1381aa|down_3|NZ_CP008921.1_1528652_1532795_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|458aa|down_4|NZ_CP008921.1_1533810_1535184_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|359aa|down_5|NZ_CP008921.1_1535295_1536372_+	NA	NA|103aa|down_6|NZ_CP008921.1_1536493_1536802_-	NA	NA|491aa|down_7|NZ_CP008921.1_1536881_1538354_-	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|194aa|down_8|NZ_CP008921.1_1538365_1538947_-	pfam04011, LemA, LemA family	NA|261aa|down_9|NZ_CP008921.1_1539019_1539802_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
GCF_000732355.1_ASM73235v1	NZ_CP008921	Streptococcus suis 6407 chromosome, complete genome	4	1910259-1910356	4	CRISPRCasFinder	no		PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	Orphan	GAAAGAACTCGACCATTCATAGAAGAGT	28	0	0	NA	NA	NA	1	1	Orphan	PrimPol,RT,DinG,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh	NA,NA|70aa|down_5|NZ_CP008921.1_1916032_1916242_-	NA|319aa|up_9|NZ_CP008921.1_1897897_1898854_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|up_8|NZ_CP008921.1_1898855_1899797_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|333aa|up_7|NZ_CP008921.1_1899799_1900798_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|597aa|up_6|NZ_CP008921.1_1901174_1902965_-	cd08510, PBP2_Lactococcal_OppA_like, The substrate binding component of an ABC-type lactococcal OppA-like transport system contains	NA|414aa|up_5|NZ_CP008921.1_1903177_1904419_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|472aa|up_4|NZ_CP008921.1_1904692_1906108_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|147aa|up_3|NZ_CP008921.1_1906457_1906898_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|409aa|up_2|NZ_CP008921.1_1906884_1908111_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|421aa|up_1|NZ_CP008921.1_1908112_1909375_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|258aa|up_0|NZ_CP008921.1_1909391_1910165_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|391aa|down_0|NZ_CP008921.1_1910623_1911796_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|241aa|down_1|NZ_CP008921.1_1911792_1912515_-	PRK02315, PRK02315, adaptor protein MecA	NA|279aa|down_2|NZ_CP008921.1_1912642_1913479_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|522aa|down_3|NZ_CP008921.1_1913605_1915171_+	cd13627, PBP2_AA_binding_like_2, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|248aa|down_4|NZ_CP008921.1_1915163_1915907_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|70aa|down_5|NZ_CP008921.1_1916032_1916242_-	NA	NA|301aa|down_6|NZ_CP008921.1_1916327_1917230_-	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|417aa|down_7|NZ_CP008921.1_1917239_1918490_-	PRK08639, PRK08639, threonine dehydratase; Validated	NA|341aa|down_8|NZ_CP008921.1_1918774_1919797_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|159aa|down_9|NZ_CP008921.1_1919928_1920405_-	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed
