assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	1	415881-415963	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GCTCCCCATTACTGGGGAGTTTT	23	1	3	415904-415940|415904-415940|415904-415940	NZ_CP012475.1_363237-363273|NZ_CP012475.1_506102-506138|NZ_CP012475.1_3055827-3055863	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA	NA|155aa|up_9|NZ_CP012475.1_409213_409678_-	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|127aa|up_8|NZ_CP012475.1_409812_410193_+	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|88aa|up_7|NZ_CP012475.1_410300_410564_-	pfam02699, YajC, Preprotein translocase subunit	NA|384aa|up_6|NZ_CP012475.1_410609_411761_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|343aa|up_5|NZ_CP012475.1_411774_412803_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|68aa|up_4|NZ_CP012475.1_412881_413085_-	pfam11146, DUF2905, Protein of unknown function (DUF2905)	NA|334aa|up_3|NZ_CP012475.1_413077_414079_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|200aa|up_2|NZ_CP012475.1_414094_414694_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|174aa|up_1|NZ_CP012475.1_414824_415346_-	pfam08955, BofC_C, BofC C-terminal domain	NA|125aa|up_0|NZ_CP012475.1_415495_415870_+	cd13913, ba3_CcO_II_C, C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II	NA|279aa|down_0|NZ_CP012475.1_415964_416801_-	pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)	NA|510aa|down_1|NZ_CP012475.1_416879_418409_-	TIGR02899, hypothetical_conserved_protein, spore coat assembly protein SafA	NA|365aa|down_2|NZ_CP012475.1_418722_419817_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|283aa|down_3|NZ_CP012475.1_419807_420656_-	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|511aa|down_4|NZ_CP012475.1_420636_422169_-	PRK08071, PRK08071, L-aspartate oxidase; Provisional	NA|372aa|down_5|NZ_CP012475.1_422256_423372_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|179aa|down_6|NZ_CP012475.1_423379_423916_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|292aa|down_7|NZ_CP012475.1_423932_424808_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|148aa|down_8|NZ_CP012475.1_424823_425267_-	PRK04435, PRK04435, ACT domain-containing protein	NA|429aa|down_9|NZ_CP012475.1_425452_426739_-	PRK12297, obgE, GTPase CgtA; Reviewed
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	2	2500202-2500565	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GTCGCACTCTATGTGAGTGCGTGGATTGAAAT,GTCGCACTCTATGTGAGTGCGTGGATTGAAAT,GTCGCACTCTATGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	4,5,5	5	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|102aa|up_5|NZ_CP012475.1_2495437_2495743_-,NA|81aa|down_1|NZ_CP012475.1_2502101_2502344_+	NA|503aa|up_9|NZ_CP012475.1_2490315_2491824_-	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|164aa|up_8|NZ_CP012475.1_2491823_2492315_-	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|272aa|up_7|NZ_CP012475.1_2492585_2493401_-	pfam02517, Abi, CAAX protease self-immunity	NA|439aa|up_6|NZ_CP012475.1_2494128_2495445_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|102aa|up_5|NZ_CP012475.1_2495437_2495743_-	NA	NA|423aa|up_4|NZ_CP012475.1_2495801_2497070_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|103aa|up_3|NZ_CP012475.1_2497094_2497403_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|113aa|up_2|NZ_CP012475.1_2497589_2497928_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|362aa|up_1|NZ_CP012475.1_2497930_2499016_+	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|299aa|up_0|NZ_CP012475.1_2499020_2499917_+	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|292aa|down_0|NZ_CP012475.1_2500795_2501671_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|81aa|down_1|NZ_CP012475.1_2502101_2502344_+	NA	NA|527aa|down_2|NZ_CP012475.1_2502397_2503978_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|down_3|NZ_CP012475.1_2504048_2504966_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|down_4|NZ_CP012475.1_2504977_2505901_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|331aa|down_5|NZ_CP012475.1_2505944_2506937_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|345aa|down_6|NZ_CP012475.1_2506933_2507968_+	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|404aa|down_7|NZ_CP012475.1_2508018_2509230_+	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|456aa|down_8|NZ_CP012475.1_2509287_2510655_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|398aa|down_9|NZ_CP012475.1_2510796_2511990_+	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	3	2514363-2514597	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	TGTCGCACTCTATGTGAGTGCGTGGATTGAAATAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,TGTGAGTGCGTGGATTGAAATA	35,32,22	0	0	NA	NA	I-C:I-C:NA	2,3,3	3	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|170aa|up_0|NZ_CP012475.1_2513439_2513949_-,NA	NA|527aa|up_9|NZ_CP012475.1_2502397_2503978_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|306aa|up_8|NZ_CP012475.1_2504048_2504966_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|308aa|up_7|NZ_CP012475.1_2504977_2505901_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|331aa|up_6|NZ_CP012475.1_2505944_2506937_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|345aa|up_5|NZ_CP012475.1_2506933_2507968_+	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|404aa|up_4|NZ_CP012475.1_2508018_2509230_+	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	NA|456aa|up_3|NZ_CP012475.1_2509287_2510655_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|398aa|up_2|NZ_CP012475.1_2510796_2511990_+	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	NA|397aa|up_1|NZ_CP012475.1_2512043_2513234_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|170aa|up_0|NZ_CP012475.1_2513439_2513949_-	NA	NA|170aa|down_0|NZ_CP012475.1_2514755_2515265_+	PHA02562, 46, endonuclease subunit; Provisional	NA|341aa|down_1|NZ_CP012475.1_2515637_2516660_+	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|365aa|down_2|NZ_CP012475.1_2516724_2517819_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|552aa|down_3|NZ_CP012475.1_2517820_2519476_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|557aa|down_4|NZ_CP012475.1_2519675_2521346_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|253aa|down_5|NZ_CP012475.1_2521350_2522109_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|366aa|down_6|NZ_CP012475.1_2522225_2523323_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|241aa|down_7|NZ_CP012475.1_2523698_2524421_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|293aa|down_8|NZ_CP012475.1_2524527_2525406_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|373aa|down_9|NZ_CP012475.1_2525531_2526650_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	4	2564068-2564155	4	CRISPRCasFinder	no	cas6,PD-DExK,cas10,csm3gr7,csx19	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Type III-A,Type III-B,Type III-C,Type III-D	ATGTTTTATATGAACTTATTGGGT	24	0	0	NA	NA	NA	1	1	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA|119aa|down_1|NZ_CP012475.1_2565350_2565707_+,PD-DExK|336aa|down_4|NZ_CP012475.1_2570386_2571394_+	NA|154aa|up_9|NZ_CP012475.1_2554184_2554646_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|337aa|up_8|NZ_CP012475.1_2554651_2555662_+	pfam02733, Dak1, Dak1 domain	NA|210aa|up_7|NZ_CP012475.1_2555675_2556305_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|319aa|up_6|NZ_CP012475.1_2556315_2557272_+	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|302aa|up_5|NZ_CP012475.1_2557874_2558780_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|324aa|up_4|NZ_CP012475.1_2558846_2559818_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|145aa|up_3|NZ_CP012475.1_2559829_2560264_+	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|494aa|up_2|NZ_CP012475.1_2560277_2561759_+	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|291aa|up_1|NZ_CP012475.1_2561778_2562651_-	TIGR02152, Putative_ribokinase, ribokinase	NA|337aa|up_0|NZ_CP012475.1_2562851_2563862_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|157aa|down_0|NZ_CP012475.1_2564389_2564860_-	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|119aa|down_1|NZ_CP012475.1_2565350_2565707_+	NA	NA|520aa|down_2|NZ_CP012475.1_2566087_2567647_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	cas6|309aa|down_3|NZ_CP012475.1_2569467_2570394_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	PD-DExK|336aa|down_4|NZ_CP012475.1_2570386_2571394_+	NA	cas10|497aa|down_5|NZ_CP012475.1_2571380_2572871_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm3gr7|694aa|down_6|NZ_CP012475.1_2572867_2574949_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|465aa|down_7|NZ_CP012475.1_2574932_2576327_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx19|191aa|down_8|NZ_CP012475.1_2576323_2576896_+	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family	csm3gr7|642aa|down_9|NZ_CP012475.1_2576876_2578802_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	5	2568047-2568276	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,PD-DExK,cas10,csm3gr7,csx19	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Type III-A,Type III-B,Type III-C,Type III-D	GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|119aa|up_1|NZ_CP012475.1_2565350_2565707_+,PD-DExK|336aa|down_1|NZ_CP012475.1_2570386_2571394_+,NA|66aa|down_8|NZ_CP012475.1_2581871_2582069_-	NA|319aa|up_9|NZ_CP012475.1_2556315_2557272_+	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|302aa|up_8|NZ_CP012475.1_2557874_2558780_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|324aa|up_7|NZ_CP012475.1_2558846_2559818_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|145aa|up_6|NZ_CP012475.1_2559829_2560264_+	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|494aa|up_5|NZ_CP012475.1_2560277_2561759_+	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|291aa|up_4|NZ_CP012475.1_2561778_2562651_-	TIGR02152, Putative_ribokinase, ribokinase	NA|337aa|up_3|NZ_CP012475.1_2562851_2563862_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|157aa|up_2|NZ_CP012475.1_2564389_2564860_-	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|119aa|up_1|NZ_CP012475.1_2565350_2565707_+	NA	NA|520aa|up_0|NZ_CP012475.1_2566087_2567647_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	cas6|309aa|down_0|NZ_CP012475.1_2569467_2570394_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	PD-DExK|336aa|down_1|NZ_CP012475.1_2570386_2571394_+	NA	cas10|497aa|down_2|NZ_CP012475.1_2571380_2572871_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm3gr7|694aa|down_3|NZ_CP012475.1_2572867_2574949_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|465aa|down_4|NZ_CP012475.1_2574932_2576327_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx19|191aa|down_5|NZ_CP012475.1_2576323_2576896_+	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family	csm3gr7|642aa|down_6|NZ_CP012475.1_2576876_2578802_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|227aa|down_7|NZ_CP012475.1_2580819_2581500_+	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|66aa|down_8|NZ_CP012475.1_2581871_2582069_-	NA	NA|599aa|down_9|NZ_CP012475.1_2582300_2584097_+	cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	6	2579000-2579890	4,6,4	PILER-CR,CRISPRCasFinder,CRT	no	cas6,PD-DExK,cas10,csm3gr7,csx19	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Type III-A,Type III-B,Type III-C,Type III-D	ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT,ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT,ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	I-C:I-C:I-C	13,13,13	13	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|119aa|up_8|NZ_CP012475.1_2565350_2565707_+,PD-DExK|336aa|up_5|NZ_CP012475.1_2570386_2571394_+,NA|66aa|down_1|NZ_CP012475.1_2581871_2582069_-	NA|157aa|up_9|NZ_CP012475.1_2564389_2564860_-	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|119aa|up_8|NZ_CP012475.1_2565350_2565707_+	NA	NA|520aa|up_7|NZ_CP012475.1_2566087_2567647_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	cas6|309aa|up_6|NZ_CP012475.1_2569467_2570394_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	PD-DExK|336aa|up_5|NZ_CP012475.1_2570386_2571394_+	NA	cas10|497aa|up_4|NZ_CP012475.1_2571380_2572871_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm3gr7|694aa|up_3|NZ_CP012475.1_2572867_2574949_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|465aa|up_2|NZ_CP012475.1_2574932_2576327_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx19|191aa|up_1|NZ_CP012475.1_2576323_2576896_+	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family	csm3gr7|642aa|up_0|NZ_CP012475.1_2576876_2578802_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|227aa|down_0|NZ_CP012475.1_2580819_2581500_+	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|66aa|down_1|NZ_CP012475.1_2581871_2582069_-	NA	NA|599aa|down_2|NZ_CP012475.1_2582300_2584097_+	cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F	NA|239aa|down_3|NZ_CP012475.1_2584153_2584870_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|578aa|down_4|NZ_CP012475.1_2584890_2586624_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|422aa|down_5|NZ_CP012475.1_2586714_2587980_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|310aa|down_6|NZ_CP012475.1_2587999_2588929_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|down_7|NZ_CP012475.1_2588918_2589752_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|down_8|NZ_CP012475.1_2589778_2591143_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|down_9|NZ_CP012475.1_2592301_2593627_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	7	2591556-2592117	7,5,5	CRISPRCasFinder,CRT,PILER-CR	no	csm3gr7,csx19	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Type III-A, Type III-D?	GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT,GTCGCACTCTNNGTGAGTGCGTGGATTGAAAT,GTGAGTGCGTGGATTGAAAT	32,32,20	0	0	NA	NA	I-C:I-C:NA	8,8,7	8	TypeIII-A,TypeIII-D?	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|66aa|up_7|NZ_CP012475.1_2581871_2582069_-,NA	csm3gr7|642aa|up_9|NZ_CP012475.1_2576876_2578802_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|227aa|up_8|NZ_CP012475.1_2580819_2581500_+	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|66aa|up_7|NZ_CP012475.1_2581871_2582069_-	NA	NA|599aa|up_6|NZ_CP012475.1_2582300_2584097_+	cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F	NA|239aa|up_5|NZ_CP012475.1_2584153_2584870_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|578aa|up_4|NZ_CP012475.1_2584890_2586624_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|422aa|up_3|NZ_CP012475.1_2586714_2587980_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|310aa|up_2|NZ_CP012475.1_2587999_2588929_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_1|NZ_CP012475.1_2588918_2589752_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|up_0|NZ_CP012475.1_2589778_2591143_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|down_0|NZ_CP012475.1_2592301_2593627_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|528aa|down_1|NZ_CP012475.1_2593656_2595240_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|256aa|down_2|NZ_CP012475.1_2595384_2596152_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|162aa|down_3|NZ_CP012475.1_2596270_2596756_+	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|158aa|down_4|NZ_CP012475.1_2596951_2597425_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|245aa|down_5|NZ_CP012475.1_2597493_2598228_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|down_6|NZ_CP012475.1_2598258_2598792_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|315aa|down_7|NZ_CP012475.1_2599623_2600568_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|down_8|NZ_CP012475.1_2600750_2601539_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|down_9|NZ_CP012475.1_2601531_2602011_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	8	2599073-2599437	6,8,6	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAATA,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT	32,33,32	0	0	NA	NA	I-C:I-C:I-C	5,5,5	5	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA	NA|310aa|up_9|NZ_CP012475.1_2587999_2588929_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|278aa|up_8|NZ_CP012475.1_2588918_2589752_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|455aa|up_7|NZ_CP012475.1_2589778_2591143_+	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|442aa|up_6|NZ_CP012475.1_2592301_2593627_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|528aa|up_5|NZ_CP012475.1_2593656_2595240_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|256aa|up_4|NZ_CP012475.1_2595384_2596152_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|162aa|up_3|NZ_CP012475.1_2596270_2596756_+	pfam07853, DUF1648, Protein of unknown function (DUF1648)	NA|158aa|up_2|NZ_CP012475.1_2596951_2597425_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|245aa|up_1|NZ_CP012475.1_2597493_2598228_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|up_0|NZ_CP012475.1_2598258_2598792_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|315aa|down_0|NZ_CP012475.1_2599623_2600568_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|down_1|NZ_CP012475.1_2600750_2601539_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|down_2|NZ_CP012475.1_2601531_2602011_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|down_3|NZ_CP012475.1_2602013_2602289_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|down_4|NZ_CP012475.1_2602314_2603661_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|down_5|NZ_CP012475.1_2603681_2604740_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|down_6|NZ_CP012475.1_2604740_2605610_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|367aa|down_7|NZ_CP012475.1_2606676_2607777_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|159aa|down_8|NZ_CP012475.1_2608441_2608918_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|down_9|NZ_CP012475.1_2608928_2609153_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	9	2606024-2606322	7,9,7	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GTCGCACTCTTAGTGAGTGCGTGGATTGAAATT,GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTAGTGAGTGCGTGGATTGAAATT	33,32,33	0	0	NA	NA	I-C:I-C:I-C	4,4,4	4	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA|78aa|down_9|NZ_CP012475.1_2620139_2620373_-	NA|158aa|up_9|NZ_CP012475.1_2596951_2597425_+	pfam17353, DUF5381, Family of unknown function (DUF5381)	NA|245aa|up_8|NZ_CP012475.1_2597493_2598228_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|178aa|up_7|NZ_CP012475.1_2598258_2598792_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|315aa|up_6|NZ_CP012475.1_2599623_2600568_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|263aa|up_5|NZ_CP012475.1_2600750_2601539_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|up_4|NZ_CP012475.1_2601531_2602011_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|up_3|NZ_CP012475.1_2602013_2602289_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|up_2|NZ_CP012475.1_2602314_2603661_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|up_1|NZ_CP012475.1_2603681_2604740_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|up_0|NZ_CP012475.1_2604740_2605610_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|367aa|down_0|NZ_CP012475.1_2606676_2607777_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|159aa|down_1|NZ_CP012475.1_2608441_2608918_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|down_2|NZ_CP012475.1_2608928_2609153_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|264aa|down_3|NZ_CP012475.1_2609197_2609989_+	COG3739, COG3739, Uncharacterized integral membrane protein [Function unknown]	NA|867aa|down_4|NZ_CP012475.1_2611576_2614177_-	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	NA|300aa|down_5|NZ_CP012475.1_2615491_2616391_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|261aa|down_6|NZ_CP012475.1_2616533_2617316_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|568aa|down_7|NZ_CP012475.1_2617498_2619202_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|245aa|down_8|NZ_CP012475.1_2619189_2619924_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|78aa|down_9|NZ_CP012475.1_2620139_2620373_-	NA
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	10	2610333-2610765	8,10,8	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT	32,32,32	0	0	NA	NA	NA:NA:NA	4,6,5	6	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA|78aa|down_5|NZ_CP012475.1_2620139_2620373_-	NA|263aa|up_9|NZ_CP012475.1_2600750_2601539_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|160aa|up_8|NZ_CP012475.1_2601531_2602011_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|up_7|NZ_CP012475.1_2602013_2602289_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|up_6|NZ_CP012475.1_2602314_2603661_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|up_5|NZ_CP012475.1_2603681_2604740_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|up_4|NZ_CP012475.1_2604740_2605610_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|367aa|up_3|NZ_CP012475.1_2606676_2607777_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|159aa|up_2|NZ_CP012475.1_2608441_2608918_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|up_1|NZ_CP012475.1_2608928_2609153_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|264aa|up_0|NZ_CP012475.1_2609197_2609989_+	COG3739, COG3739, Uncharacterized integral membrane protein [Function unknown]	NA|867aa|down_0|NZ_CP012475.1_2611576_2614177_-	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	NA|300aa|down_1|NZ_CP012475.1_2615491_2616391_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|261aa|down_2|NZ_CP012475.1_2616533_2617316_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|568aa|down_3|NZ_CP012475.1_2617498_2619202_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|245aa|down_4|NZ_CP012475.1_2619189_2619924_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|78aa|down_5|NZ_CP012475.1_2620139_2620373_-	NA	NA|427aa|down_6|NZ_CP012475.1_2620571_2621852_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|295aa|down_7|NZ_CP012475.1_2621907_2622792_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|293aa|down_8|NZ_CP012475.1_2622807_2623686_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|881aa|down_9|NZ_CP012475.1_2623701_2626344_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	11	2614682-2615179	11,9,9	CRISPRCasFinder,PILER-CR,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT,GTGAGTGCGTGGATTGAAAT,GTGAGTGCGTGGATTGAAAT	32,20,20	0	0	NA	NA	I-C:NA:NA	7,6,7	7	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA|78aa|down_4|NZ_CP012475.1_2620139_2620373_-	NA|160aa|up_9|NZ_CP012475.1_2601531_2602011_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|92aa|up_8|NZ_CP012475.1_2602013_2602289_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|449aa|up_7|NZ_CP012475.1_2602314_2603661_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|353aa|up_6|NZ_CP012475.1_2603681_2604740_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|290aa|up_5|NZ_CP012475.1_2604740_2605610_+	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II	NA|367aa|up_4|NZ_CP012475.1_2606676_2607777_-	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal	NA|159aa|up_3|NZ_CP012475.1_2608441_2608918_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|75aa|up_2|NZ_CP012475.1_2608928_2609153_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|264aa|up_1|NZ_CP012475.1_2609197_2609989_+	COG3739, COG3739, Uncharacterized integral membrane protein [Function unknown]	NA|867aa|up_0|NZ_CP012475.1_2611576_2614177_-	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	NA|300aa|down_0|NZ_CP012475.1_2615491_2616391_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|261aa|down_1|NZ_CP012475.1_2616533_2617316_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|568aa|down_2|NZ_CP012475.1_2617498_2619202_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|245aa|down_3|NZ_CP012475.1_2619189_2619924_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|78aa|down_4|NZ_CP012475.1_2620139_2620373_-	NA	NA|427aa|down_5|NZ_CP012475.1_2620571_2621852_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|295aa|down_6|NZ_CP012475.1_2621907_2622792_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|293aa|down_7|NZ_CP012475.1_2622807_2623686_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|881aa|down_8|NZ_CP012475.1_2623701_2626344_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|306aa|down_9|NZ_CP012475.1_2626540_2627458_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	12	2627814-2628047	10,10,12	PILER-CR,CRT,CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	TGTCGCACTCTTTGTGAGTGCGTGGATTGAAATA,TGTCGCACTCTTTGTGAGTGCGTGGATTGAAATA,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT	34,34,32	0	0	NA	NA	I-C:I-C:I-C	2,3,3	3	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|78aa|up_5|NZ_CP012475.1_2620139_2620373_-,NA|166aa|down_3|NZ_CP012475.1_2632465_2632963_+,NA|85aa|down_9|NZ_CP012475.1_2646321_2646576_+	NA|300aa|up_9|NZ_CP012475.1_2615491_2616391_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|261aa|up_8|NZ_CP012475.1_2616533_2617316_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|568aa|up_7|NZ_CP012475.1_2617498_2619202_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|245aa|up_6|NZ_CP012475.1_2619189_2619924_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|78aa|up_5|NZ_CP012475.1_2620139_2620373_-	NA	NA|427aa|up_4|NZ_CP012475.1_2620571_2621852_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|295aa|up_3|NZ_CP012475.1_2621907_2622792_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|293aa|up_2|NZ_CP012475.1_2622807_2623686_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|881aa|up_1|NZ_CP012475.1_2623701_2626344_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|306aa|up_0|NZ_CP012475.1_2626540_2627458_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|236aa|down_0|NZ_CP012475.1_2628358_2629066_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|400aa|down_1|NZ_CP012475.1_2629146_2630346_-	cd03322, RspA, The starvation sensing protein RspA from E	NA|452aa|down_2|NZ_CP012475.1_2630642_2631998_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|166aa|down_3|NZ_CP012475.1_2632465_2632963_+	NA	NA|988aa|down_4|NZ_CP012475.1_2633130_2636094_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|373aa|down_5|NZ_CP012475.1_2636167_2637286_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|2434aa|down_6|NZ_CP012475.1_2637489_2644791_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|197aa|down_7|NZ_CP012475.1_2644807_2645398_+	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases	NA|113aa|down_8|NZ_CP012475.1_2645705_2646044_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|85aa|down_9|NZ_CP012475.1_2646321_2646576_+	NA
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	13	2692566-2692919	11,13,11	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT,GTCGCACTCTTTGTGAGTGCGTGGAT	32,32,26	0	0	NA	NA	I-C:I-C:NA	3,4,5	5	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA|185aa|down_2|NZ_CP012475.1_2695048_2695603_-,NA|1160aa|down_3|NZ_CP012475.1_2695919_2699399_-,NA|482aa|down_4|NZ_CP012475.1_2699422_2700868_-	NA|319aa|up_9|NZ_CP012475.1_2681341_2682298_-	pfam01636, APH, Phosphotransferase enzyme family	NA|166aa|up_8|NZ_CP012475.1_2682382_2682880_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|399aa|up_7|NZ_CP012475.1_2683015_2684212_+	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins	NA|585aa|up_6|NZ_CP012475.1_2684476_2686231_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|249aa|up_5|NZ_CP012475.1_2686227_2686974_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|487aa|up_4|NZ_CP012475.1_2686990_2688451_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|402aa|up_3|NZ_CP012475.1_2688547_2689753_-	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]	NA|297aa|up_2|NZ_CP012475.1_2689702_2690593_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|286aa|up_1|NZ_CP012475.1_2690864_2691722_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|220aa|up_0|NZ_CP012475.1_2691718_2692378_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|270aa|down_0|NZ_CP012475.1_2693076_2693886_+	COG1378, COG1378, Predicted transcriptional regulators [Transcription]	NA|289aa|down_1|NZ_CP012475.1_2693965_2694832_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|185aa|down_2|NZ_CP012475.1_2695048_2695603_-	NA	NA|1160aa|down_3|NZ_CP012475.1_2695919_2699399_-	NA	NA|482aa|down_4|NZ_CP012475.1_2699422_2700868_-	NA	NA|331aa|down_5|NZ_CP012475.1_2701193_2702186_+	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|420aa|down_6|NZ_CP012475.1_2702375_2703635_+	cd13658, PBP2_CMBP, The periplasmic binding component of ABC transport systems specific for cyclo/maltodextrin; possess the type 2 periplasmic binding fold	NA|425aa|down_7|NZ_CP012475.1_2703695_2704970_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|down_8|NZ_CP012475.1_2704969_2705812_+	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]	NA|401aa|down_9|NZ_CP012475.1_2705832_2707035_+	COG3867, COG3867, Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
GCF_000737305.2_ASM73730v2	NZ_CP012475	Alkalihalobacillus clausii strain ENTPro chromosome, complete genome	14	4095881-4095976	14	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	Orphan	CACGCACTCACTAAGAGTGCGACTGAAGCC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA|341aa|up_7|NZ_CP012475.1_4090010_4091033_-,NA|121aa|up_4|NZ_CP012475.1_4093003_4093366_-,NA|282aa|up_2|NZ_CP012475.1_4094082_4094928_-,NA|54aa|up_1|NZ_CP012475.1_4095020_4095182_-,NA|126aa|down_2|NZ_CP012475.1_4097341_4097719_+,NA|54aa|down_3|NZ_CP012475.1_4097895_4098057_+,NA|67aa|down_4|NZ_CP012475.1_4098078_4098279_+,NA|257aa|down_5|NZ_CP012475.1_4098361_4099132_+,NA|58aa|down_6|NZ_CP012475.1_4099150_4099324_+,NA|497aa|down_7|NZ_CP012475.1_4099344_4100835_+,NA|72aa|down_8|NZ_CP012475.1_4100985_4101201_+,NA|67aa|down_9|NZ_CP012475.1_4101197_4101398_+	NA|137aa|up_9|NZ_CP012475.1_4087869_4088280_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|384aa|up_8|NZ_CP012475.1_4088780_4089932_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|341aa|up_7|NZ_CP012475.1_4090010_4091033_-	NA	NA|163aa|up_6|NZ_CP012475.1_4091063_4091552_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|480aa|up_5|NZ_CP012475.1_4091567_4093007_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|121aa|up_4|NZ_CP012475.1_4093003_4093366_-	NA	NA|174aa|up_3|NZ_CP012475.1_4093429_4093951_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|282aa|up_2|NZ_CP012475.1_4094082_4094928_-	NA	NA|54aa|up_1|NZ_CP012475.1_4095020_4095182_-	NA	NA|116aa|up_0|NZ_CP012475.1_4095446_4095794_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|77aa|down_0|NZ_CP012475.1_4096155_4096386_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|211aa|down_1|NZ_CP012475.1_4096712_4097345_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|126aa|down_2|NZ_CP012475.1_4097341_4097719_+	NA	NA|54aa|down_3|NZ_CP012475.1_4097895_4098057_+	NA	NA|67aa|down_4|NZ_CP012475.1_4098078_4098279_+	NA	NA|257aa|down_5|NZ_CP012475.1_4098361_4099132_+	NA	NA|58aa|down_6|NZ_CP012475.1_4099150_4099324_+	NA	NA|497aa|down_7|NZ_CP012475.1_4099344_4100835_+	NA	NA|72aa|down_8|NZ_CP012475.1_4100985_4101201_+	NA	NA|67aa|down_9|NZ_CP012475.1_4101197_4101398_+	NA
GCF_000737305.2_ASM73730v2	NZ_CP012476	Alkalihalobacillus clausii strain ENTPro plasmid unnamed, complete sequence	1	2314-2430	1	CRISPRCasFinder	no			Orphan	TAATGAACGGAATGTAACCGAGACTGTCAACCA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,cas6,PD-DExK,cas10,csm3gr7,csx19,casR,DinG	NA,NA|214aa|down_0|NZ_CP012476.1_2755_3397_+,NA|65aa|down_3|NZ_CP012476.1_5459_5654_-,NA|100aa|down_5|NZ_CP012476.1_6286_6586_+,NA|105aa|down_6|NZ_CP012476.1_6728_7043_+,NA|67aa|down_7|NZ_CP012476.1_7143_7344_+,NA|192aa|down_9|NZ_CP012476.1_7914_8490_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|214aa|down_0|NZ_CP012476.1_2755_3397_+	NA	NA|398aa|down_1|NZ_CP012476.1_3383_4577_+	cd13399, Slt35-like, Slt35-like lytic transglycosylase	NA|208aa|down_2|NZ_CP012476.1_4722_5346_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|65aa|down_3|NZ_CP012476.1_5459_5654_-	NA	NA|51aa|down_4|NZ_CP012476.1_5912_6065_+	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein	NA|100aa|down_5|NZ_CP012476.1_6286_6586_+	NA	NA|105aa|down_6|NZ_CP012476.1_6728_7043_+	NA	NA|67aa|down_7|NZ_CP012476.1_7143_7344_+	NA	NA|169aa|down_8|NZ_CP012476.1_7377_7884_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|192aa|down_9|NZ_CP012476.1_7914_8490_+	NA
