assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	1	333666-334464	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP009101.1_333181_333364_-,NA	NA|398aa|up_9|NZ_CP009101.1_323359_324553_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP009101.1_324588_326271_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP009101.1_326287_328483_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP009101.1_328596_329730_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP009101.1_329726_330347_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP009101.1_330443_331025_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP009101.1_330954_331680_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP009101.1_331769_332690_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP009101.1_332729_333158_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP009101.1_333181_333364_-	NA	NA|839aa|down_0|NZ_CP009101.1_336582_339099_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP009101.1_339389_341000_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP009101.1_341023_341932_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP009101.1_342155_344051_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP009101.1_344047_345664_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP009101.1_345660_349653_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP009101.1_349649_349958_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP009101.1_349960_351502_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP009101.1_351550_351844_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP009101.1_351873_352164_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	2	338130-338352	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP009101.1_333181_333364_-,NA	NA|561aa|up_9|NZ_CP009101.1_324588_326271_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP009101.1_326287_328483_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP009101.1_328596_329730_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP009101.1_329726_330347_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP009101.1_330443_331025_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP009101.1_330954_331680_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP009101.1_331769_332690_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP009101.1_332729_333158_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP009101.1_333181_333364_-	NA	NA|958aa|up_0|NZ_CP009101.1_333458_336332_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP009101.1_339389_341000_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP009101.1_341023_341932_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP009101.1_342155_344051_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP009101.1_344047_345664_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP009101.1_345660_349653_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP009101.1_349649_349958_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP009101.1_349960_351502_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP009101.1_351550_351844_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP009101.1_351873_352164_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP009101.1_352174_353062_+	pfam14011, ESX-1_EspG, EspG family
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	3	366489-367187	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366777-366818|366852-366884	NZ_CP009101.1_374793-374834|NZ_CP009101.1_373608-373640	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP009101.1_363501_363804_+,NA|161aa|down_1|NZ_CP009101.1_376582_377065_-,NA|410aa|down_5|NZ_CP009101.1_379181_380411_+	NA|262aa|up_9|NZ_CP009101.1_358196_358982_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP009101.1_358970_359774_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP009101.1_359783_361181_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP009101.1_361359_363135_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP009101.1_363277_363505_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP009101.1_363501_363804_+	NA	NA|74aa|up_3|NZ_CP009101.1_363851_364073_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP009101.1_364069_364495_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP009101.1_364630_365263_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP009101.1_365259_366168_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP009101.1_375923_376595_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP009101.1_376582_377065_-	NA	NA|239aa|down_2|NZ_CP009101.1_377122_377839_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP009101.1_377940_378597_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP009101.1_378666_379158_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP009101.1_379181_380411_+	NA	NA|621aa|down_6|NZ_CP009101.1_380565_382428_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP009101.1_382499_382886_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP009101.1_382888_383551_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP009101.1_383611_384496_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	4	631291-631428	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631309-631326|631309-631326|631393-631410	NZ_CP009101.1_22466-22483|NZ_CP009101.1_1412070-1412087|NZ_CP009101.1_973239-973256	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP009101.1_622129_622291_-,NA|478aa|up_0|NZ_CP009101.1_628306_629740_-,NA|450aa|down_2|NZ_CP009101.1_633063_634413_-,NA|93aa|down_5|NZ_CP009101.1_635943_636222_-	NA|325aa|up_9|NZ_CP009101.1_619899_620874_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP009101.1_620915_622133_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP009101.1_622129_622291_-	NA	NA|106aa|up_6|NZ_CP009101.1_622337_622655_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP009101.1_622801_624586_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP009101.1_624481_625489_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP009101.1_625570_626449_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP009101.1_626465_627260_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP009101.1_627256_628297_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP009101.1_628306_629740_-	NA	NA|211aa|down_0|NZ_CP009101.1_631751_632384_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP009101.1_632380_633043_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP009101.1_633063_634413_-	NA	NA|381aa|down_3|NZ_CP009101.1_634424_635567_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP009101.1_635581_635884_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP009101.1_635943_636222_-	NA	NA|418aa|down_6|NZ_CP009101.1_636218_637472_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP009101.1_637591_637978_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP009101.1_638040_638925_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP009101.1_639020_639923_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	5	692033-692109	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP009101.1_677717_677933_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP009101.1_677929_678337_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP009101.1_678396_679083_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP009101.1_679236_681870_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP009101.1_681892_684280_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP009101.1_684417_685140_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP009101.1_685136_685934_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP009101.1_685935_686823_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP009101.1_686828_688043_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP009101.1_689066_690512_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP009101.1_693244_694795_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP009101.1_694846_695239_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP009101.1_695235_695493_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP009101.1_695675_696911_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP009101.1_697161_697575_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP009101.1_697571_697808_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP009101.1_697911_698418_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP009101.1_698531_699002_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP009101.1_699045_699807_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP009101.1_699863_700175_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	6	926613-927560	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927396-927431|927396-927431|927396-927431	NZ_CP009101.1_675136-675101|NZ_CP009101.1_1213752-1213787|NZ_CP009101.1_2423834-2423799	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP009101.1_931570_932122_-,NA|81aa|down_8|NZ_CP009101.1_937585_937828_+	NA|685aa|up_9|NZ_CP009101.1_914252_916307_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|389aa|up_8|NZ_CP009101.1_916472_917639_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP009101.1_917726_918743_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP009101.1_918904_919546_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP009101.1_919626_920682_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP009101.1_920733_921126_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP009101.1_921183_921606_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP009101.1_921567_921858_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP009101.1_921962_922868_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP009101.1_922886_923702_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP009101.1_927829_930478_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP009101.1_930945_931590_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP009101.1_931570_932122_-	NA	NA|241aa|down_3|NZ_CP009101.1_932202_932925_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP009101.1_932995_934024_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP009101.1_934712_935483_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP009101.1_935569_936382_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP009101.1_936449_937310_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP009101.1_937585_937828_+	NA	NA|431aa|down_9|NZ_CP009101.1_938104_939397_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	7	964571-964822	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	964744-964799	NZ_CP009101.1_964872-964927	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP009101.1_962669_962870_+,NA	NA|135aa|up_9|NZ_CP009101.1_952817_953222_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|158aa|up_8|NZ_CP009101.1_953249_953723_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_7|NZ_CP009101.1_953719_954913_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|721aa|up_6|NZ_CP009101.1_956283_958446_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|550aa|up_5|NZ_CP009101.1_958512_960162_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP009101.1_960331_962602_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP009101.1_962669_962870_+	NA	NA|168aa|up_2|NZ_CP009101.1_962879_963383_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP009101.1_963379_963862_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP009101.1_963858_964284_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP009101.1_965972_966251_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP009101.1_966254_967337_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NZ_CP009101.1_967333_967723_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP009101.1_967887_968295_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NZ_CP009101.1_968413_970243_-	pfam00934, PE, PE family	NA|651aa|down_5|NZ_CP009101.1_970503_972456_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP009101.1_972544_973705_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP009101.1_973804_974293_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP009101.1_974289_975936_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP009101.1_976073_976862_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	8	1191319-1191427	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP009101.1_1180686_1182318_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP009101.1_1182393_1183458_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP009101.1_1183510_1183984_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP009101.1_1184017_1184881_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP009101.1_1184885_1185743_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP009101.1_1185743_1186826_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP009101.1_1186906_1187326_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP009101.1_1187437_1188004_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP009101.1_1188000_1188396_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP009101.1_1188423_1190427_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP009101.1_1192512_1194276_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP009101.1_1194272_1195046_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP009101.1_1195057_1196095_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP009101.1_1196281_1197118_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP009101.1_1197233_1198085_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP009101.1_1198158_1199376_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP009101.1_1199428_1200373_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP009101.1_1200595_1201663_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP009101.1_1201719_1203114_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP009101.1_1203315_1204038_+	pfam06271, RDD, RDD family
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	9	1211953-1212809	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212336-1212357|1212381-1212396|1212519-1212540|1212519-1212540|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654|1212636-1212654	NZ_CP009101.1_2960580-2960559|NZ_CP009101.1_2088641-2088626|NZ_CP009101.1_837442-837463|NZ_CP009101.1_1217646-1217667|NZ_CP009101.1_674800-674782|NZ_CP009101.1_840503-840521|NZ_CP009101.1_1213479-1213497|NZ_CP009101.1_1217619-1217637|NZ_CP009101.1_1217691-1217709|NZ_CP009101.1_1630713-1630695|NZ_CP009101.1_1633539-1633521|NZ_CP009101.1_1990841-1990823|NZ_CP009101.1_2061569-2061551|NZ_CP009101.1_2062016-2061998|NZ_CP009101.1_2062115-2062097|NZ_CP009101.1_2802153-2802135|NZ_CP009101.1_2805681-2805663|NZ_CP009101.1_150203-150221|NZ_CP009101.1_335223-335205|NZ_CP009101.1_335676-335658|NZ_CP009101.1_335727-335709|NZ_CP009101.1_335736-335718|NZ_CP009101.1_338029-338011|NZ_CP009101.1_338425-338407|NZ_CP009101.1_338454-338472|NZ_CP009101.1_338548-338530|NZ_CP009101.1_363079-363061|NZ_CP009101.1_443438-443420|NZ_CP009101.1_546778-546760|NZ_CP009101.1_623992-624010|NZ_CP009101.1_624214-624232|NZ_CP009101.1_673966-673948|NZ_CP009101.1_840224-840242|NZ_CP009101.1_1090983-1091001|NZ_CP009101.1_1091631-1091649|NZ_CP009101.1_1095689-1095671|NZ_CP009101.1_1213008-1213026|NZ_CP009101.1_1213398-1213416|NZ_CP009101.1_1218039-1218057|NZ_CP009101.1_1489222-1489204|NZ_CP009101.1_1618674-1618656|NZ_CP009101.1_1619127-1619109|NZ_CP009101.1_1636052-1636034|NZ_CP009101.1_1636061-1636043|NZ_CP009101.1_1636187-1636169|NZ_CP009101.1_1864320-1864302|NZ_CP009101.1_1864848-1864830|NZ_CP009101.1_1990115-1990097|NZ_CP009101.1_2001482-2001500|NZ_CP009101.1_2088839-2088821|NZ_CP009101.1_2303539-2303521|NZ_CP009101.1_2357001-2356983|NZ_CP009101.1_2419656-2419674|NZ_CP009101.1_2423747-2423729|NZ_CP009101.1_2569256-2569238|NZ_CP009101.1_2693532-2693550|NZ_CP009101.1_2795468-2795450|NZ_CP009101.1_2796050-2796032|NZ_CP009101.1_3054614-3054632|NZ_CP009101.1_3054713-3054731|NZ_CP009101.1_3705520-3705538|NZ_CP009101.1_3737497-3737479|NZ_CP009101.1_3738121-3738103|NZ_CP009101.1_3738364-3738346|NZ_CP009101.1_3738497-3738479|NZ_CP009101.1_3802351-3802369|NZ_CP009101.1_3802534-3802552|NZ_CP009101.1_3802702-3802720|NZ_CP009101.1_3930510-3930528|NZ_CP009101.1_3932240-3932258|NZ_CP009101.1_3940747-3940765|NZ_CP009101.1_3948742-3948760|NZ_CP009101.1_4031724-4031706|NZ_CP009101.1_4094251-4094269	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP009101.1_1207385_1207652_+,NA|61aa|down_3|NZ_CP009101.1_1215226_1215409_+,NA|35aa|down_4|NZ_CP009101.1_1215518_1215623_+	NA|465aa|up_9|NZ_CP009101.1_1201719_1203114_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP009101.1_1203315_1204038_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP009101.1_1204069_1205236_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP009101.1_1205306_1205801_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP009101.1_1205986_1206421_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP009101.1_1206522_1207389_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP009101.1_1207385_1207652_+	NA	NA|674aa|up_2|NZ_CP009101.1_1207638_1209660_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP009101.1_1209758_1210487_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP009101.1_1210597_1211386_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP009101.1_1214042_1214363_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP009101.1_1214515_1214950_+	pfam00934, PE, PE family	NA|83aa|down_2|NZ_CP009101.1_1214966_1215215_+	pfam00553, CBM_2, Cellulose binding domain	NA|61aa|down_3|NZ_CP009101.1_1215226_1215409_+	NA	NA|35aa|down_4|NZ_CP009101.1_1215518_1215623_+	NA	NA|152aa|down_5|NZ_CP009101.1_1215600_1216056_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP009101.1_1216470_1219032_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP009101.1_1219249_1220188_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP009101.1_1220575_1221856_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP009101.1_1221960_1222788_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	10	1572197-1573269	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP009101.1_1563960_1564278_+,NA	NA|103aa|up_9|NZ_CP009101.1_1561475_1561784_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP009101.1_1561780_1563400_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP009101.1_1563960_1564278_+	NA	NA|209aa|up_6|NZ_CP009101.1_1564412_1565039_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP009101.1_1565104_1565437_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP009101.1_1565452_1566709_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP009101.1_1566836_1568048_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP009101.1_1568120_1569599_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP009101.1_1569595_1570981_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP009101.1_1571058_1572093_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP009101.1_1574123_1574525_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP009101.1_1574521_1574779_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP009101.1_1574861_1575821_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP009101.1_1575845_1576808_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP009101.1_1576941_1577544_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP009101.1_1577624_1579592_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP009101.1_1579609_1580434_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP009101.1_1580602_1581085_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP009101.1_1581156_1581981_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP009101.1_1582177_1583116_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	11	1636633-1637106	3,4	PILER-CR,CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG,NGCCGCCGGCNCCGCCGN	38,18	0	0	NA	NA	NA:NA	2,6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP009101.1_1623135_1623249_-,NA|137aa|up_7|NZ_CP009101.1_1623298_1623709_-,NA|288aa|down_2|NZ_CP009101.1_1640697_1641561_+	NA|162aa|up_9|NZ_CP009101.1_1622218_1622704_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP009101.1_1623135_1623249_-	NA	NA|137aa|up_7|NZ_CP009101.1_1623298_1623709_-	NA	NA|248aa|up_6|NZ_CP009101.1_1623725_1624469_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|305aa|up_5|NZ_CP009101.1_1624465_1625380_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP009101.1_1625432_1626977_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP009101.1_1626973_1628095_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP009101.1_1628111_1630214_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP009101.1_1630652_1634642_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP009101.1_1635043_1635970_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP009101.1_1638398_1639664_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP009101.1_1639691_1640678_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP009101.1_1640697_1641561_+	NA	NA|311aa|down_3|NZ_CP009101.1_1641510_1642443_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP009101.1_1642554_1643340_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP009101.1_1643336_1644278_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP009101.1_1644380_1646156_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP009101.1_1646203_1647010_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP009101.1_1647006_1649547_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP009101.1_1649543_1650737_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	12	2088311-2088565	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088392-2088409|2088392-2088409|2088482-2088499	NZ_CP009101.1_401089-401072|NZ_CP009101.1_607447-607430|NZ_CP009101.1_3450221-3450204	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP009101.1_2087670_2087934_-,NA	NA|165aa|up_9|NZ_CP009101.1_2073964_2074459_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP009101.1_2074862_2075540_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP009101.1_2075898_2078724_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP009101.1_2078950_2079811_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP009101.1_2079851_2080718_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP009101.1_2080722_2082609_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP009101.1_2082624_2084658_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP009101.1_2084777_2087003_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP009101.1_2087278_2087674_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP009101.1_2087670_2087934_-	NA	NA|346aa|down_0|NZ_CP009101.1_2089702_2090740_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP009101.1_2090739_2092107_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP009101.1_2092280_2093717_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP009101.1_2093752_2095204_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP009101.1_2095233_2096184_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP009101.1_2096198_2096615_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP009101.1_2096892_2097315_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP009101.1_2097363_2097666_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP009101.1_2097662_2097977_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP009101.1_2097976_2099710_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	13	2168842-2169061	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP009101.1_2159947_2160355_-,NA|127aa|down_5|NZ_CP009101.1_2176577_2176958_-	NA|155aa|up_9|NZ_CP009101.1_2153275_2153740_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP009101.1_2153915_2156138_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP009101.1_2156175_2156619_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP009101.1_2156732_2157326_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP009101.1_2157408_2158014_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP009101.1_2158113_2159118_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP009101.1_2159217_2159970_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP009101.1_2159947_2160355_-	NA	NA|767aa|up_1|NZ_CP009101.1_2160489_2162790_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP009101.1_2162959_2167339_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP009101.1_2171088_2171553_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP009101.1_2171650_2172514_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP009101.1_2172551_2173823_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP009101.1_2174094_2175210_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP009101.1_2175200_2176541_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP009101.1_2176577_2176958_-	NA	NA|621aa|down_6|NZ_CP009101.1_2177114_2178977_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP009101.1_2178984_2179464_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP009101.1_2179700_2180474_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP009101.1_2180477_2181245_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	14	2796799-2797027	4	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGCCGTTGCCGCCGTTGCC	19	0	0	NA	NA	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|108aa|up_5|NZ_CP009101.1_2786621_2786945_-,NA|100aa|down_1|NZ_CP009101.1_2800892_2801192_-,NA|69aa|down_3|NZ_CP009101.1_2806369_2806576_-,NA|74aa|down_6|NZ_CP009101.1_2808129_2808351_+	NA|1625aa|up_9|NZ_CP009101.1_2777423_2782298_-	COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]	NA|559aa|up_8|NZ_CP009101.1_2782401_2784078_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|162aa|up_7|NZ_CP009101.1_2784158_2784644_-	PRK05853, PRK05853, hypothetical protein; Validated	NA|421aa|up_6|NZ_CP009101.1_2784692_2785954_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|108aa|up_5|NZ_CP009101.1_2786621_2786945_-	NA	NA|790aa|up_4|NZ_CP009101.1_2786960_2789330_-	PRK03355, PRK03355, glycerol-3-phosphate 1-O-acyltransferase	NA|581aa|up_3|NZ_CP009101.1_2789326_2791069_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|492aa|up_2|NZ_CP009101.1_2791065_2792541_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|422aa|up_1|NZ_CP009101.1_2792769_2794035_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|257aa|up_0|NZ_CP009101.1_2794396_2795167_+	PRK05870, PRK05870, enoyl-CoA hydratase; Provisional	NA|1138aa|down_0|NZ_CP009101.1_2797513_2800927_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|100aa|down_1|NZ_CP009101.1_2800892_2801192_-	NA	NA|1661aa|down_2|NZ_CP009101.1_2801300_2806283_-	pfam00934, PE, PE family	NA|69aa|down_3|NZ_CP009101.1_2806369_2806576_-	NA	NA|208aa|down_4|NZ_CP009101.1_2806711_2807335_+	TIGR00725, TIGR00725, TIGR00725 family protein	NA|251aa|down_5|NZ_CP009101.1_2807324_2808077_+	PRK00956, thyA, thymidylate synthase; Provisional	NA|74aa|down_6|NZ_CP009101.1_2808129_2808351_+	NA	NA|142aa|down_7|NZ_CP009101.1_2808356_2808782_+	TIGR00028, Hypothetical_protein_Rv2872/MT2939/Mb2897	NA|394aa|down_8|NZ_CP009101.1_2808804_2809986_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|349aa|down_9|NZ_CP009101.1_2809982_2811029_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	15	3119205-3120559	5,7,6	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP009101.1_3112484_3112739_-,NA|135aa|up_7|NZ_CP009101.1_3112886_3113291_+,NA|64aa|up_6|NZ_CP009101.1_3113287_3113479_+,NA|86aa|up_4|NZ_CP009101.1_3115065_3115323_+,NA|104aa|up_3|NZ_CP009101.1_3115427_3115739_+,NA|203aa|up_2|NZ_CP009101.1_3116158_3116767_+,NA	NA|92aa|up_9|NZ_CP009101.1_3112033_3112309_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP009101.1_3112484_3112739_-	NA	NA|135aa|up_7|NZ_CP009101.1_3112886_3113291_+	NA	NA|64aa|up_6|NZ_CP009101.1_3113287_3113479_+	NA	NA|385aa|up_5|NZ_CP009101.1_3113677_3114832_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP009101.1_3115065_3115323_+	NA	NA|104aa|up_3|NZ_CP009101.1_3115427_3115739_+	NA	NA|203aa|up_2|NZ_CP009101.1_3116158_3116767_+	NA	NA|470aa|up_1|NZ_CP009101.1_3116837_3118247_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP009101.1_3118243_3119056_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP009101.1_3120585_3121847_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP009101.1_3123643_3123985_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP009101.1_3123985_3125002_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP009101.1_3125014_3126163_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP009101.1_3126258_3127386_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP009101.1_3127382_3128291_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP009101.1_3128271_3128982_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP009101.1_3128991_3129366_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP009101.1_3129362_3131801_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP009101.1_3131797_3132520_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	16	3121882-3123595	8,7,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP009101.1_3112484_3112739_-,NA|135aa|up_8|NZ_CP009101.1_3112886_3113291_+,NA|64aa|up_7|NZ_CP009101.1_3113287_3113479_+,NA|86aa|up_5|NZ_CP009101.1_3115065_3115323_+,NA|104aa|up_4|NZ_CP009101.1_3115427_3115739_+,NA|203aa|up_3|NZ_CP009101.1_3116158_3116767_+,NA	NA|85aa|up_9|NZ_CP009101.1_3112484_3112739_-	NA	NA|135aa|up_8|NZ_CP009101.1_3112886_3113291_+	NA	NA|64aa|up_7|NZ_CP009101.1_3113287_3113479_+	NA	NA|385aa|up_6|NZ_CP009101.1_3113677_3114832_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP009101.1_3115065_3115323_+	NA	NA|104aa|up_4|NZ_CP009101.1_3115427_3115739_+	NA	NA|203aa|up_3|NZ_CP009101.1_3116158_3116767_+	NA	NA|470aa|up_2|NZ_CP009101.1_3116837_3118247_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP009101.1_3118243_3119056_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP009101.1_3120585_3121847_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP009101.1_3123643_3123985_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009101.1_3123985_3125002_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP009101.1_3125014_3126163_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP009101.1_3126258_3127386_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP009101.1_3127382_3128291_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP009101.1_3128271_3128982_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP009101.1_3128991_3129366_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP009101.1_3129362_3131801_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP009101.1_3131797_3132520_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP009101.1_3132919_3133465_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	17	3740682-3741223	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NZ_CP009101.1_3755323_3755611_-,NA|87aa|down_7|NZ_CP009101.1_3768730_3768991_-	NA|282aa|up_9|NZ_CP009101.1_3719942_3720788_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP009101.1_3721262_3721703_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP009101.1_3721736_3722606_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP009101.1_3722626_3723637_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP009101.1_3723921_3724554_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP009101.1_3724620_3725850_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP009101.1_3726132_3727482_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP009101.1_3727493_3728633_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP009101.1_3728629_3729361_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP009101.1_3729369_3736941_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP009101.1_3743194_3743452_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_1|NZ_CP009101.1_3753805_3754252_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_2|NZ_CP009101.1_3754288_3755029_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_3|NZ_CP009101.1_3755323_3755611_-	NA	NA|265aa|down_4|NZ_CP009101.1_3767340_3768135_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_5|NZ_CP009101.1_3768216_3768588_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_6|NZ_CP009101.1_3768485_3768704_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_7|NZ_CP009101.1_3768730_3768991_-	NA	NA|130aa|down_8|NZ_CP009101.1_3769105_3769495_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_9|NZ_CP009101.1_3769508_3769802_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)
GCF_000738475.1_ASM73847v1	NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	18	4110668-4110756	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP009101.1_4101254_4102025_-,NA|233aa|up_0|NZ_CP009101.1_4109772_4110471_-,NA|126aa|down_6|NZ_CP009101.1_4115991_4116369_+	NA|388aa|up_9|NZ_CP009101.1_4096925_4098089_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP009101.1_4098085_4099138_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP009101.1_4099636_4100500_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP009101.1_4101254_4102025_-	NA	NA|549aa|up_5|NZ_CP009101.1_4102021_4103668_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP009101.1_4103664_4104528_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP009101.1_4104520_4105447_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP009101.1_4105448_4107074_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP009101.1_4107781_4109737_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP009101.1_4109772_4110471_-	NA	NA|173aa|down_0|NZ_CP009101.1_4110816_4111335_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP009101.1_4111335_4112319_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP009101.1_4112311_4113505_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP009101.1_4113510_4114332_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP009101.1_4114463_4115147_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP009101.1_4115146_4115884_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP009101.1_4115991_4116369_+	NA	NA|225aa|down_7|NZ_CP009101.1_4116467_4117142_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP009101.1_4117247_4118042_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP009101.1_4118048_4118504_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
