assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	1	196288-196386	1	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CGACATTCGGGAAGAAGCAAAACCGCCATT	30	0	0	NA	NA	NA	1	1	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA|103aa|up_8|NZ_CP009158.1_191165_191474_+,NA|88aa|up_7|NZ_CP009158.1_191415_191679_-,NA|49aa|up_6|NZ_CP009158.1_191868_192015_+,NA|56aa|up_5|NZ_CP009158.1_192398_192566_-,NA|138aa|up_3|NZ_CP009158.1_193438_193852_-,NA|117aa|down_2|NZ_CP009158.1_198155_198506_+,NA|188aa|down_6|NZ_CP009158.1_201610_202174_-,NA|68aa|down_9|NZ_CP009158.1_203387_203591_+	NA|214aa|up_9|NZ_CP009158.1_190320_190962_-	pfam12083, DUF3560, Domain of unknown function (DUF3560)	NA|103aa|up_8|NZ_CP009158.1_191165_191474_+	NA	NA|88aa|up_7|NZ_CP009158.1_191415_191679_-	NA	NA|49aa|up_6|NZ_CP009158.1_191868_192015_+	NA	NA|56aa|up_5|NZ_CP009158.1_192398_192566_-	NA	NA|93aa|up_4|NZ_CP009158.1_192562_192841_-	cd03173, DUF619-like, DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases	NA|138aa|up_3|NZ_CP009158.1_193438_193852_-	NA	NA|219aa|up_2|NZ_CP009158.1_193915_194572_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|69aa|up_1|NZ_CP009158.1_194704_194911_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|242aa|up_0|NZ_CP009158.1_195251_195977_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|224aa|down_0|NZ_CP009158.1_196803_197475_+	pfam06992, Phage_lambda_P, Replication protein P	NA|150aa|down_1|NZ_CP009158.1_197709_198159_+	pfam05772, NinB, NinB protein	NA|117aa|down_2|NZ_CP009158.1_198155_198506_+	NA	NA|190aa|down_3|NZ_CP009158.1_198649_199219_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|126aa|down_4|NZ_CP009158.1_199215_199593_+	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|62aa|down_5|NZ_CP009158.1_199601_199787_-	PRK11675, PRK11675, LexA regulated protein; Provisional	NA|188aa|down_6|NZ_CP009158.1_201610_202174_-	NA	NA|182aa|down_7|NZ_CP009158.1_202562_203108_+	cd16901, lyz_P1, P1 lysozyme Lyz-like proteins	NA|106aa|down_8|NZ_CP009158.1_203107_203425_+	pfam10828, DUF2570, Protein of unknown function (DUF2570)	NA|68aa|down_9|NZ_CP009158.1_203387_203591_+	NA
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	2	487017-487185	2	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CTGCGGGTCCAGCGGGACCAAAGG	24	0	0	NA	NA	NA	2	2	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|505aa|up_9|NZ_CP009158.1_473897_475412_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|195aa|up_8|NZ_CP009158.1_475542_476127_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|218aa|up_7|NZ_CP009158.1_476143_476797_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|171aa|up_6|NZ_CP009158.1_476986_477499_-	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|99aa|up_5|NZ_CP009158.1_477551_477848_-	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|796aa|up_4|NZ_CP009158.1_477864_480252_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|328aa|up_3|NZ_CP009158.1_480407_481391_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|227aa|up_2|NZ_CP009158.1_481700_482381_+	pfam01865, PhoU_div, Protein of unknown function DUF47	NA|421aa|up_1|NZ_CP009158.1_482400_483663_+	pfam01384, PHO4, Phosphate transporter family	NA|203aa|up_0|NZ_CP009158.1_483736_484345_+	COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms]	NA|318aa|down_0|NZ_CP009158.1_487205_488159_+	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|212aa|down_1|NZ_CP009158.1_488397_489033_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|258aa|down_2|NZ_CP009158.1_489036_489810_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|367aa|down_3|NZ_CP009158.1_489832_490933_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|166aa|down_4|NZ_CP009158.1_491012_491510_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|532aa|down_5|NZ_CP009158.1_491698_493294_+	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|244aa|down_6|NZ_CP009158.1_493662_494394_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|469aa|down_7|NZ_CP009158.1_494395_495802_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|234aa|down_8|NZ_CP009158.1_495806_496508_+	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|435aa|down_9|NZ_CP009158.1_496619_497924_+	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	3	487252-487392	3	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CTGCGGGTCCAGCGGGACCAAAGG	24	2	2	487276-487314|487339-487368	NZ_CP009158.1_268439-268477|NZ_CP009158.1_661953-661982	NA	2	2	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|195aa|up_9|NZ_CP009158.1_475542_476127_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|218aa|up_8|NZ_CP009158.1_476143_476797_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|171aa|up_7|NZ_CP009158.1_476986_477499_-	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|99aa|up_6|NZ_CP009158.1_477551_477848_-	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|796aa|up_5|NZ_CP009158.1_477864_480252_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|328aa|up_4|NZ_CP009158.1_480407_481391_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|227aa|up_3|NZ_CP009158.1_481700_482381_+	pfam01865, PhoU_div, Protein of unknown function DUF47	NA|421aa|up_2|NZ_CP009158.1_482400_483663_+	pfam01384, PHO4, Phosphate transporter family	NA|203aa|up_1|NZ_CP009158.1_483736_484345_+	COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms]	NA|710aa|up_0|NZ_CP009158.1_485113_487243_+	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|212aa|down_0|NZ_CP009158.1_488397_489033_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|258aa|down_1|NZ_CP009158.1_489036_489810_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|367aa|down_2|NZ_CP009158.1_489832_490933_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|166aa|down_3|NZ_CP009158.1_491012_491510_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|532aa|down_4|NZ_CP009158.1_491698_493294_+	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|244aa|down_5|NZ_CP009158.1_493662_494394_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|469aa|down_6|NZ_CP009158.1_494395_495802_+	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|234aa|down_7|NZ_CP009158.1_495806_496508_+	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|435aa|down_8|NZ_CP009158.1_496619_497924_+	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed	NA|707aa|down_9|NZ_CP009158.1_497928_500049_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	4	576642-576996	4	CRISPRCasFinder	no	WYL	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Unclear	GGTCCTATGGGTCCAGCAGGGGCTGCTGGTC	31	2	3	576844-576893|576925-576965|576925-576965	NZ_CP009158.1_1813034-1812985|NZ_CP009158.1_268586-268626|NZ_CP009158.1_944294-944254	NA	4	4	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA|99aa|up_9|NZ_CP009158.1_564655_564952_+,NA|216aa|down_6|NZ_CP009158.1_584038_584686_+	NA|99aa|up_9|NZ_CP009158.1_564655_564952_+	NA	NA|357aa|up_8|NZ_CP009158.1_565055_566126_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|up_7|NZ_CP009158.1_566127_566778_+	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|160aa|up_6|NZ_CP009158.1_566795_567275_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|405aa|up_5|NZ_CP009158.1_568072_569287_+	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|406aa|up_4|NZ_CP009158.1_569434_570652_+	TIGR00837, Tyrosine-specific_transport_protein, aromatic amino acid transport protein	NA|177aa|up_3|NZ_CP009158.1_570793_571324_-	PRK04946, PRK04946, endonuclease SmrB	NA|315aa|up_2|NZ_CP009158.1_571410_572355_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|341aa|up_1|NZ_CP009158.1_572469_573492_+	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|199aa|up_0|NZ_CP009158.1_573502_574099_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|364aa|down_0|NZ_CP009158.1_578114_579206_-	PRK11162, mltA, murein transglycosylase A; Provisional	NA|660aa|down_1|NZ_CP009158.1_579316_581296_-	PRK05054, PRK05054, exoribonuclease II; Provisional	NA|115aa|down_2|NZ_CP009158.1_581510_581855_+	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|99aa|down_3|NZ_CP009158.1_581857_582154_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	WYL|321aa|down_4|NZ_CP009158.1_582210_583173_+	pfam13280, WYL, WYL domain	NA|258aa|down_5|NZ_CP009158.1_583248_584022_+	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily	NA|216aa|down_6|NZ_CP009158.1_584038_584686_+	NA	NA|239aa|down_7|NZ_CP009158.1_584964_585681_+	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1	NA|686aa|down_8|NZ_CP009158.1_586903_588961_+	pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	NA|263aa|down_9|NZ_CP009158.1_589048_589837_-	COG0623, FabI, Enoyl-[acyl-carrier-protein]
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	5	1492778-1492946	5	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CTGCGGGTCCAGCGGGACCAAAGG	24	0	0	NA	NA	NA	2	2	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|477aa|up_9|NZ_CP009158.1_1479523_1480954_+	PRK09442, panF, sodium/pantothenate symporter	NA|441aa|up_8|NZ_CP009158.1_1481215_1482538_-	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|275aa|up_7|NZ_CP009158.1_1482690_1483515_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|265aa|up_6|NZ_CP009158.1_1483914_1484709_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|384aa|up_5|NZ_CP009158.1_1484718_1485870_+	PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional	NA|104aa|up_4|NZ_CP009158.1_1486067_1486379_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|86aa|up_3|NZ_CP009158.1_1486399_1486657_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|307aa|up_2|NZ_CP009158.1_1487665_1488586_+	pfam00892, EamA, EamA-like transporter family	NA|392aa|up_1|NZ_CP009158.1_1488622_1489798_+	PRK12298, obgE, GTPase CgtA; Reviewed	NA|114aa|up_0|NZ_CP009158.1_1489908_1490250_+	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|288aa|down_0|NZ_CP009158.1_1494088_1494952_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|351aa|down_1|NZ_CP009158.1_1495725_1496778_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|548aa|down_2|NZ_CP009158.1_1496944_1498588_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|96aa|down_3|NZ_CP009158.1_1498698_1498986_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|467aa|down_4|NZ_CP009158.1_1499377_1500778_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|224aa|down_5|NZ_CP009158.1_1500764_1501436_-	PRK10336, PRK10336, two-component system response regulator QseB	NA|122aa|down_6|NZ_CP009158.1_1501496_1501862_-	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|287aa|down_7|NZ_CP009158.1_1502030_1502891_-	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|57aa|down_8|NZ_CP009158.1_1503054_1503225_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|79aa|down_9|NZ_CP009158.1_1503236_1503473_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	6	1493012-1493152	6	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CTGCGGGTCCAGCGGGACCAAAGG	24	2	2	1493036-1493074|1493099-1493128	NZ_CP009158.1_268439-268477|NZ_CP009158.1_661953-661982	NA	2	2	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|477aa|up_9|NZ_CP009158.1_1479523_1480954_+	PRK09442, panF, sodium/pantothenate symporter	NA|441aa|up_8|NZ_CP009158.1_1481215_1482538_-	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|275aa|up_7|NZ_CP009158.1_1482690_1483515_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|265aa|up_6|NZ_CP009158.1_1483914_1484709_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|384aa|up_5|NZ_CP009158.1_1484718_1485870_+	PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional	NA|104aa|up_4|NZ_CP009158.1_1486067_1486379_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|86aa|up_3|NZ_CP009158.1_1486399_1486657_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|307aa|up_2|NZ_CP009158.1_1487665_1488586_+	pfam00892, EamA, EamA-like transporter family	NA|392aa|up_1|NZ_CP009158.1_1488622_1489798_+	PRK12298, obgE, GTPase CgtA; Reviewed	NA|114aa|up_0|NZ_CP009158.1_1489908_1490250_+	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|288aa|down_0|NZ_CP009158.1_1494088_1494952_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|351aa|down_1|NZ_CP009158.1_1495725_1496778_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|548aa|down_2|NZ_CP009158.1_1496944_1498588_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|96aa|down_3|NZ_CP009158.1_1498698_1498986_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|467aa|down_4|NZ_CP009158.1_1499377_1500778_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|224aa|down_5|NZ_CP009158.1_1500764_1501436_-	PRK10336, PRK10336, two-component system response regulator QseB	NA|122aa|down_6|NZ_CP009158.1_1501496_1501862_-	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|287aa|down_7|NZ_CP009158.1_1502030_1502891_-	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|57aa|down_8|NZ_CP009158.1_1503054_1503225_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|79aa|down_9|NZ_CP009158.1_1503236_1503473_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed
GCF_000740985.1_ASM74098v1	NZ_CP009158	Glaesserella parasuis strain SH03 chromosome, complete genome	7	2261836-2261939	7	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	TTTCATAAAATGTAGGTCGGGCATTTATGCCCGAC	35	0	0	NA	NA	NA	1	1	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|404aa|up_9|NZ_CP009158.1_2250808_2252020_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|194aa|up_8|NZ_CP009158.1_2252026_2252608_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|341aa|up_7|NZ_CP009158.1_2252816_2253839_-	PRK09283, PRK09283, porphobilinogen synthase	NA|539aa|up_6|NZ_CP009158.1_2254018_2255635_+	pfam02646, RmuC, RmuC family	NA|188aa|up_5|NZ_CP009158.1_2255634_2256198_+	PRK06895, PRK06895, anthranilate synthase component II	NA|157aa|up_4|NZ_CP009158.1_2256372_2256843_+	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|594aa|up_3|NZ_CP009158.1_2256839_2258621_+	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|182aa|up_2|NZ_CP009158.1_2258645_2259191_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|110aa|up_1|NZ_CP009158.1_2259265_2259595_+	PRK10972, PRK10972, cell division protein ZapA	NA|196aa|up_0|NZ_CP009158.1_2259844_2260432_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|342aa|down_0|NZ_CP009158.1_2262956_2263982_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|301aa|down_1|NZ_CP009158.1_2263971_2264874_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
