assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000742835.1_ASM74283v1	NZ_CP008941	Candidatus Paracaedibacter acanthamoebae isolate PRA3, complete genome	1	720827-720931	1	CRISPRCasFinder	no		RT,cas3,DinG,DEDDh	Orphan	CCGAAGATTGAGACTTCGATAGTG	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DinG,DEDDh	NA|73aa|up_9|NZ_CP008941.1_709226_709445_-,NA|46aa|up_5|NZ_CP008941.1_714034_714172_-,NA|63aa|down_4|NZ_CP008941.1_727328_727517_-,NA|136aa|down_5|NZ_CP008941.1_727789_728197_-	NA|73aa|up_9|NZ_CP008941.1_709226_709445_-	NA	NA|465aa|up_8|NZ_CP008941.1_709431_710826_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|459aa|up_7|NZ_CP008941.1_710913_712290_-	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains	NA|443aa|up_6|NZ_CP008941.1_712383_713712_-	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|46aa|up_5|NZ_CP008941.1_714034_714172_-	NA	NA|225aa|up_4|NZ_CP008941.1_714246_714921_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|421aa|up_3|NZ_CP008941.1_714917_716180_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|264aa|up_2|NZ_CP008941.1_716426_717218_+	PRK08159, PRK08159, enoyl-[acyl-carrier-protein] reductase FabI	NA|362aa|up_1|NZ_CP008941.1_717224_718310_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|579aa|up_0|NZ_CP008941.1_718333_720070_+	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type	NA|590aa|down_0|NZ_CP008941.1_722641_724411_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|288aa|down_1|NZ_CP008941.1_724629_725493_-	cd01171, YXKO-related, B	NA|345aa|down_2|NZ_CP008941.1_725531_726566_-	cd14495, PTPLP-like, Protein tyrosine phosphatase-like domains of phytases and similar domains	NA|76aa|down_3|NZ_CP008941.1_726750_726978_-	pfam07330, DUF1467, Protein of unknown function (DUF1467)	NA|63aa|down_4|NZ_CP008941.1_727328_727517_-	NA	NA|136aa|down_5|NZ_CP008941.1_727789_728197_-	NA	NA|152aa|down_6|NZ_CP008941.1_728206_728662_-	pfam13936, HTH_38, Helix-turn-helix domain	NA|239aa|down_7|NZ_CP008941.1_729001_729718_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|294aa|down_8|NZ_CP008941.1_729710_730592_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|202aa|down_9|NZ_CP008941.1_730596_731202_+	cd06259, YdcF-like, YdcF-like
GCF_000742835.1_ASM74283v1	NZ_CP008941	Candidatus Paracaedibacter acanthamoebae isolate PRA3, complete genome	2	790249-790328	2	CRISPRCasFinder	no		RT,cas3,DinG,DEDDh	Orphan	GACCCAGCCTCTGCTGAATTGATTCG	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DinG,DEDDh	NA|315aa|up_9|NZ_CP008941.1_777947_778892_-,NA|84aa|up_6|NZ_CP008941.1_780809_781061_+,NA|473aa|up_5|NZ_CP008941.1_781141_782560_-,NA|103aa|up_4|NZ_CP008941.1_782850_783159_+,NA|318aa|up_1|NZ_CP008941.1_786524_787478_+,NA|65aa|down_0|NZ_CP008941.1_791041_791236_-,NA|51aa|down_2|NZ_CP008941.1_792761_792914_+,NA|73aa|down_3|NZ_CP008941.1_793459_793678_+,NA|288aa|down_8|NZ_CP008941.1_800259_801123_+	NA|315aa|up_9|NZ_CP008941.1_777947_778892_-	NA	NA|239aa|up_8|NZ_CP008941.1_779041_779758_-	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|295aa|up_7|NZ_CP008941.1_779754_780639_-	PRK00089, era, GTPase Era; Reviewed	NA|84aa|up_6|NZ_CP008941.1_780809_781061_+	NA	NA|473aa|up_5|NZ_CP008941.1_781141_782560_-	NA	NA|103aa|up_4|NZ_CP008941.1_782850_783159_+	NA	NA|599aa|up_3|NZ_CP008941.1_783245_785042_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	NA|394aa|up_2|NZ_CP008941.1_785168_786350_+	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|318aa|up_1|NZ_CP008941.1_786524_787478_+	NA	NA|633aa|up_0|NZ_CP008941.1_787697_789596_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|65aa|down_0|NZ_CP008941.1_791041_791236_-	NA	NA|441aa|down_1|NZ_CP008941.1_791239_792562_-	PRK05614, gltA, citrate synthase	NA|51aa|down_2|NZ_CP008941.1_792761_792914_+	NA	NA|73aa|down_3|NZ_CP008941.1_793459_793678_+	NA	NA|94aa|down_4|NZ_CP008941.1_793796_794078_+	sd00034, LRR_AMN1, leucine-rich repeats, antagonist of mitotic exit network protein 1-like subfamily	NA|793aa|down_5|NZ_CP008941.1_794581_796960_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|221aa|down_6|NZ_CP008941.1_797267_797930_+	PRK00023, cmk, (d)CMP kinase	NA|577aa|down_7|NZ_CP008941.1_798047_799778_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|288aa|down_8|NZ_CP008941.1_800259_801123_+	NA	NA|280aa|down_9|NZ_CP008941.1_801170_802010_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_000742835.1_ASM74283v1	NZ_CP008941	Candidatus Paracaedibacter acanthamoebae isolate PRA3, complete genome	3	1122378-1122560	1	PILER-CR	no		RT,cas3,DinG,DEDDh	Orphan	GCAGAACCAGATTGGAGATGCTGGGGCGCACGTCCTAGCCAAGAATA	47	1	4	1122425-1122449|1122425-1122449|1122425-1122449|1122425-1122449	NZ_CP008941.1_258470-258446|NZ_CP008941.1_1122561-1122585|NZ_CP008941.1_1122888-1122912|NZ_CP008941.1_1122960-1122984	NA	2	2	Orphan	RT,cas3,DinG,DEDDh	NA|79aa|up_7|NZ_CP008941.1_1111937_1112174_-,NA|77aa|up_5|NZ_CP008941.1_1112740_1112971_-,NA|155aa|up_3|NZ_CP008941.1_1116678_1117143_+,NA|622aa|up_1|NZ_CP008941.1_1118463_1120329_-,NA|200aa|up_0|NZ_CP008941.1_1120636_1121236_-,NA|131aa|down_7|NZ_CP008941.1_1134306_1134699_-,NA|53aa|down_9|NZ_CP008941.1_1139868_1140027_+	NA|428aa|up_9|NZ_CP008941.1_1108713_1109997_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|338aa|up_8|NZ_CP008941.1_1110095_1111109_-	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|79aa|up_7|NZ_CP008941.1_1111937_1112174_-	NA	NA|93aa|up_6|NZ_CP008941.1_1112394_1112673_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|77aa|up_5|NZ_CP008941.1_1112740_1112971_-	NA	NA|1165aa|up_4|NZ_CP008941.1_1113167_1116662_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA	NA|155aa|up_3|NZ_CP008941.1_1116678_1117143_+	NA	NA|181aa|up_2|NZ_CP008941.1_1117297_1117840_+	pfam04352, ProQ, ProQ/FINO family	NA|622aa|up_1|NZ_CP008941.1_1118463_1120329_-	NA	NA|200aa|up_0|NZ_CP008941.1_1120636_1121236_-	NA	NA|827aa|down_0|NZ_CP008941.1_1123280_1125761_+	sd00010, SLR, Sel1-like repeat	NA|441aa|down_1|NZ_CP008941.1_1125984_1127307_+	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	NA|137aa|down_2|NZ_CP008941.1_1127547_1127958_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|91aa|down_3|NZ_CP008941.1_1127959_1128232_-	pfam13700, DUF4158, Domain of unknown function (DUF4158)	NA|201aa|down_4|NZ_CP008941.1_1128344_1128947_+	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|1044aa|down_5|NZ_CP008941.1_1129029_1132161_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|366aa|down_6|NZ_CP008941.1_1132574_1133672_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|131aa|down_7|NZ_CP008941.1_1134306_1134699_-	NA	NA|722aa|down_8|NZ_CP008941.1_1136987_1139153_-	smart00191, Int_alpha, Integrin alpha (beta-propellor repeats)	NA|53aa|down_9|NZ_CP008941.1_1139868_1140027_+	NA
