The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	328422	342729	2939973	tail	Enterococcus_phage(30.0%)	16	NA	NA
WP_002357859.1|328422_330819_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.1	1.7e-19
WP_002360497.1|330843_331194_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002393873.1|331276_331507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002382232.1|331566_332052_-	toxin	NA	A0A097BY56	Enterococcus_phage	70.5	4.4e-60
WP_002357856.1|332086_332569_-	helix-turn-helix transcriptional regulator	NA	R9QTP6	Staphylococcus_phage	48.6	1.2e-20
WP_002392532.1|332964_333720_+	DnaD domain protein	NA	A0A0K0MX39	Streptococcus_phage	56.0	8.7e-31
WP_002404235.1|333738_334581_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	31.0	3.3e-31
WP_002357852.1|334647_335040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002357851.1|335059_335467_+	RinA family phage transcriptional activator	NA	NA	NA	NA	NA
WP_002382237.1|335688_336105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002381948.1|336117_336630_+|tail	phage major tail protein, TP901-1 family	tail	W6LP72	Streptococcus_phage	49.4	8.8e-35
WP_002357848.1|336662_337022_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	32.2	7.6e-09
WP_002392533.1|337114_337408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002404234.1|337397_340331_+	membrane protein	NA	W8EBC4	Geobacillus_phage	41.2	6.9e-15
WP_002365553.1|340332_341259_+|tail	phage tail family protein	tail	C9E2K5	Enterococcus_phage	78.6	9.0e-147
WP_002357844.1|341271_342729_+	structural protein	NA	C9E2K6	Enterococcus_phage	47.7	9.5e-175
>prophage 2
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	784802	793446	2939973		Synechococcus_phage(50.0%)	9	NA	NA
WP_002364081.1|784802_785375_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.1	9.2e-25
WP_002384439.1|785371_786403_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	44.4	1.1e-55
WP_002384438.1|786404_787844_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.3	4.7e-49
WP_002414592.1|787819_790039_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.1	1.3e-146
WP_002364085.1|790035_790710_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002357271.1|790710_790962_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002357270.1|790975_791689_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3ELR0	Synechococcus_phage	43.0	4.3e-48
WP_002384435.1|791840_792965_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002384434.1|792957_793446_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	3.8e-19
>prophage 3
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	823915	842007	2939973	protease,transposase,integrase	Thermus_phage(25.0%)	19	840205:840229	845271:845295
WP_002403141.1|823915_824794_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_077497612.1|824818_826351_-	M4 family metallopeptidase coccolysin	NA	NA	NA	NA	NA
WP_002384418.1|826585_827389_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_002403140.1|827585_828107_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002360101.1|828330_829236_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_002360100.1|829409_829826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297659.1|830983_832162_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	30.5	3.4e-29
WP_002382441.1|832264_832621_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002360096.1|832924_833170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002297668.1|833163_833565_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002297670.1|834132_835968_-	beta-galactosidase	NA	NA	NA	NA	NA
WP_002330923.1|836139_837402_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002360092.1|837539_837764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298159.1|837760_837925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298157.1|838018_839311_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	40.4	3.9e-31
WP_002313174.1|839584_839845_-	hypothetical protein	NA	NA	NA	NA	NA
840205:840229	attL	TTTCTATTTACACAAAATATTTTAC	NA	NA	NA	NA
WP_101495273.1|840449_841611_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.0e-79
WP_077497620.1|841683_841890_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	53.3	2.0e-06
WP_002383094.1|841893_842007_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
845271:845295	attR	GTAAAATATTTTGTGTAAATAGAAA	NA	NA	NA	NA
>prophage 4
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	858015	869499	2939973	transposase	Streptococcus_phage(100.0%)	11	NA	NA
WP_002298830.1|858015_859020_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	66.3	1.4e-121
WP_002384404.1|859016_861140_-|transposase	transposase	transposase	A0A1S5SF30	Streptococcus_phage	58.7	2.4e-174
WP_002330910.1|861144_863592_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
WP_002298826.1|863578_863968_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	66.7	2.5e-42
WP_002383098.1|864019_864760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360078.1|864766_865603_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_002298823.1|865667_866171_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.2	3.1e-56
WP_002298822.1|866183_866405_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
WP_002414793.1|866801_868052_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	62.1	3.0e-113
WP_002330905.1|868183_868318_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002360076.1|868314_869499_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.1	1.0e-142
>prophage 5
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	1072215	1091598	2939973	integrase	Streptococcus_phage(89.47%)	22	1071188:1071204	1101375:1101391
1071188:1071204	attL	CTGTTATTTTCTACTTT	NA	NA	NA	NA
WP_001291561.1|1072215_1073433_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|1073514_1073718_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|1074178_1074409_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|1074405_1074828_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|1075332_1075686_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1075745_1075913_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_002414694.1|1076031_1077951_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	99.7	0.0e+00
WP_001814923.1|1077966_1078083_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|1078327_1079263_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769868.1|1079259_1080261_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|1080257_1082435_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331160.1|1082437_1084885_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|1084868_1085375_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1085349_1085847_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1085963_1086185_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|1086227_1087433_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|1087455_1087608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1087610_1088996_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1089024_1089411_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1089426_1089741_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_002387247.1|1090201_1090555_+	YxeA family protein	NA	NA	NA	NA	NA
WP_002356866.1|1090593_1091598_-	nucleoid-associated protein	NA	A0A090D855	Clostridium_phage	22.3	8.6e-10
1101375:1101391	attR	AAAGTAGAAAATAACAG	NA	NA	NA	NA
>prophage 6
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	1514156	1523896	2939973		Streptococcus_phage(57.14%)	11	NA	NA
WP_002385686.1|1514156_1516340_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.8	3.1e-286
WP_002365065.1|1516372_1516969_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.1	2.3e-50
WP_002362328.1|1517013_1518132_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002365066.1|1518257_1519016_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002356375.1|1518999_1519662_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.1	6.7e-19
WP_002356373.1|1519676_1520549_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	57.6	6.2e-81
WP_002356372.1|1520660_1521008_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	36.7	8.1e-16
WP_002356371.1|1521000_1521840_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002384059.1|1521956_1522907_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	6.2e-34
WP_002356367.1|1522908_1523238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002356366.1|1523257_1523896_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.1e-54
>prophage 7
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	1544689	1595508	2939973	terminase,protease,portal,integrase,plate,tRNA,holin,tail	Enterococcus_phage(43.75%)	59	1586730:1586744	1591473:1591487
WP_002362481.1|1544689_1545400_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002385677.1|1545410_1545953_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002356329.1|1546040_1546811_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002356327.1|1546976_1547552_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_002399111.1|1547642_1549208_+	membrane protein	NA	NA	NA	NA	NA
WP_002392337.1|1549159_1550293_+	DUF4950 domain-containing protein	NA	C9E2L5	Enterococcus_phage	51.5	1.0e-19
WP_002356323.1|1550552_1551617_-	FUSC family protein	NA	NA	NA	NA	NA
WP_002389274.1|1551872_1552124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414603.1|1552916_1553726_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_002404583.1|1554121_1555360_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2MYF3	Enterococcus_phage	74.5	1.2e-175
WP_002369080.1|1555364_1555568_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	100.0	2.6e-30
WP_040118571.1|1555836_1555974_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002414601.1|1556358_1556883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002369975.1|1556882_1557200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414600.1|1557192_1557510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010784633.1|1557502_1558411_-|plate	phage baseplate upper protein	plate	Q9AYV5	Lactococcus_phage	25.7	1.4e-11
WP_025193066.1|1558425_1561140_-	peptidoglycan DD-metalloendopeptidase family protein	NA	Q9AZX5	Lactococcus_phage	38.2	6.1e-175
WP_002414530.1|1561121_1561856_-	hypothetical protein	NA	B8R658	Lactobacillus_phage	32.5	1.6e-16
WP_025193156.1|1561845_1564743_-	tape measure protein	NA	D7RWD8	Brochothrix_phage	43.6	1.2e-80
WP_002364485.1|1564991_1565345_-	hypothetical protein	NA	A0A2H4J3G5	uncultured_Caudovirales_phage	30.5	5.9e-06
WP_002414527.1|1565397_1566240_-|tail	tail protein	tail	A5GYM0	Lactococcus_phage	53.9	5.5e-10
WP_002414526.1|1566240_1566615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002402415.1|1566618_1567017_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002414525.1|1567009_1567387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002395886.1|1567383_1567728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414524.1|1567736_1567973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414522.1|1567996_1568899_-	DUF5309 family protein	NA	NA	NA	NA	NA
WP_002414521.1|1568912_1569539_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_002414520.1|1569756_1570077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414519.1|1570133_1570364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414518.1|1570364_1572149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414517.1|1572123_1573599_-|portal	phage portal protein	portal	A0A0A7AQF2	Bacillus_phage	25.5	2.2e-30
WP_025193069.1|1573611_1574886_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1B1UZZ1	Enterococcus_phage	94.7	7.9e-234
WP_002414515.1|1574875_1575337_-|terminase	terminase small subunit	terminase	D7RWC4	Brochothrix_phage	46.7	4.8e-24
WP_002369895.1|1575714_1576575_-	hypothetical protein	NA	A0A0S2MYE5	Enterococcus_phage	99.5	1.2e-113
WP_002357362.1|1577432_1577849_-	autolysin	NA	D2IZL7	Enterococcus_phage	99.3	1.7e-68
WP_002357361.1|1578238_1578487_-	hypothetical protein	NA	D2IZL5	Enterococcus_phage	87.9	4.5e-29
WP_010784645.1|1578621_1579137_-	DUF1642 domain-containing protein	NA	D2IYV1	Enterococcus_phage	78.8	1.1e-66
WP_002414886.1|1579270_1579603_-	hypothetical protein	NA	D2IYU9	Enterococcus_phage	90.2	6.7e-36
WP_010784646.1|1579603_1579984_-	hypothetical protein	NA	D2IZL0	Enterococcus_phage	67.2	5.3e-37
WP_025193072.1|1579980_1580217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010784647.1|1580224_1581274_-	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	64.6	4.6e-131
WP_025191024.1|1581326_1581533_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	98.4	5.6e-25
WP_002414634.1|1581552_1581882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414633.1|1581893_1582421_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	56.0	2.0e-42
WP_002365159.1|1582425_1583277_-	helix-turn-helix domain-containing protein	NA	U5U793	Lactobacillus_phage	29.3	3.1e-24
WP_002414632.1|1583280_1583922_-	hypothetical protein	NA	U5U4M2	Lactobacillus_phage	35.1	3.7e-30
WP_002365157.1|1583926_1584943_-	AAA family ATPase	NA	A0A0S2SY47	Bacillus_phage	43.2	9.2e-60
WP_002381628.1|1584954_1585434_-	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	48.4	1.2e-33
WP_002364665.1|1585923_1586109_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	86.7	3.2e-19
WP_002414624.1|1586119_1586830_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	90.6	7.5e-117
1586730:1586744	attL	ATTGCTGCTAAAACA	NA	NA	NA	NA
WP_002414623.1|1586911_1587181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414622.1|1587195_1587390_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	37.9	8.5e-07
WP_002401993.1|1587634_1587982_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	45.2	4.9e-21
WP_002401992.1|1588010_1588421_+	ImmA/IrrE family metallo-endopeptidase	NA	D2IZV8	Enterococcus_phage	31.5	2.6e-05
WP_002414620.1|1589256_1589586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033072557.1|1589708_1590890_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	31.8	1.9e-48
WP_002356321.1|1590993_1591143_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002362353.1|1593570_1595508_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.3	2.3e-112
1591473:1591487	attR	TGTTTTAGCAGCAAT	NA	NA	NA	NA
>prophage 8
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	1659823	1695776	2939973	head,terminase,protease,portal,plate,holin,tail,capsid	Enterococcus_phage(37.5%)	55	NA	NA
WP_002355121.1|1659823_1660024_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.2	5.3e-20
WP_002369969.1|1660177_1660378_-	DNA repair protein	NA	NA	NA	NA	NA
WP_002369970.1|1660408_1661494_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	50.7	1.7e-88
WP_002369080.1|1661498_1661702_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	100.0	2.6e-30
WP_002367247.1|1661704_1661938_-|holin	holin	holin	D2J075	Enterococcus_phage	70.2	7.0e-24
WP_002369972.1|1661971_1662109_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002414602.1|1662108_1662483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414601.1|1662497_1663022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002369975.1|1663021_1663339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414600.1|1663331_1663649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033072562.1|1663641_1664550_-|plate	phage baseplate upper protein	plate	Q9AYV5	Lactococcus_phage	26.2	1.4e-11
WP_002414606.1|1664568_1667367_-	CHAP domain-containing protein	NA	D7RWE0	Brochothrix_phage	39.0	4.5e-64
WP_025186801.1|1667363_1668068_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_048943158.1|1668073_1670389_-|tail	phage tail tape measure protein	tail	A0A0U4IIN6	Exiguobacterium_phage	52.9	1.0e-85
WP_002369981.1|1670637_1671066_-	hypothetical protein	NA	A0A1B1P7Q6	Bacillus_phage	47.7	1.3e-28
WP_025186802.1|1671068_1671725_-	hypothetical protein	NA	A0A2H4JGN2	uncultured_Caudovirales_phage	45.8	5.4e-45
WP_002369983.1|1671721_1672078_-	HK97 gp10 family phage protein	NA	A0A1B2APW9	Phage_Wrath	42.6	2.6e-17
WP_002369984.1|1672070_1672403_-	hypothetical protein	NA	A0A2H4JFJ3	uncultured_Caudovirales_phage	41.0	4.8e-18
WP_002365100.1|1672392_1672719_-|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	52.4	1.7e-20
WP_002385660.1|1672696_1672987_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1B1P7M9	Bacillus_phage	64.3	7.4e-23
WP_002369987.1|1672979_1674344_-|capsid	phage major capsid protein	capsid	A0A1B2APY9	Phage_Wrath	67.6	2.2e-125
WP_002393805.1|1674356_1674929_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	62.4	6.5e-63
WP_002388450.1|1674900_1676127_-|portal	phage portal protein	portal	A0A2H4J9C7	uncultured_Caudovirales_phage	66.3	4.1e-147
WP_002414607.1|1676145_1677873_-|terminase	terminase large subunit	terminase	A0A2H4JDG5	uncultured_Caudovirales_phage	70.4	4.6e-253
WP_002365107.1|1677869_1678322_-	hypothetical protein	NA	A0A2H4JFK0	uncultured_Caudovirales_phage	68.5	8.0e-48
WP_002369992.1|1678432_1678807_-	HNH endonuclease	NA	A0A1B0T6C5	Bacillus_phage	69.9	6.2e-46
WP_002369993.1|1678806_1679214_-	hypothetical protein	NA	A0A1B1P7N8	Bacillus_phage	39.4	3.4e-13
WP_002406142.1|1679794_1680124_-	hypothetical protein	NA	A0A1B1P9Z3	Enterococcus_phage	46.6	4.8e-10
WP_002357362.1|1680331_1680748_-	autolysin	NA	D2IZL7	Enterococcus_phage	99.3	1.7e-68
WP_002380820.1|1681091_1681292_-	hypothetical protein	NA	D2IYV2	Enterococcus_phage	100.0	1.8e-31
WP_033072561.1|1681295_1681820_-	DUF1642 domain-containing protein	NA	D2IZL3	Enterococcus_phage	54.5	2.0e-42
WP_002414787.1|1681833_1682112_-	hypothetical protein	NA	A0A0S2MYC7	Enterococcus_phage	94.6	6.9e-42
WP_002414786.1|1682112_1682442_-	hypothetical protein	NA	S6CQM6	Streptococcus_phage	71.0	2.5e-35
WP_010784247.1|1682438_1682909_-	hypothetical protein	NA	A0A097BY92	Enterococcus_phage	66.2	3.4e-41
WP_002370000.1|1682931_1683372_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_002370001.1|1683368_1684685_-	N-6 DNA methylase	NA	A0A1X9I6H1	Streptococcus_phage	44.8	6.5e-90
WP_033072560.1|1684740_1684947_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	95.2	1.6e-24
WP_002370003.1|1684962_1685568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002370004.1|1685579_1686044_-	DUF1064 domain-containing protein	NA	A0A1I9KKZ1	Lactobacillus_phage	48.3	7.0e-31
WP_002365122.1|1686192_1686462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002414890.1|1686600_1687452_-	ATP-binding protein	NA	U5PVD6	Bacillus_phage	32.9	1.9e-21
WP_002414891.1|1687463_1688219_-	DnaD domain protein	NA	Q6J1V6	Lactobacillus_phage	59.8	2.2e-34
WP_002370007.1|1688233_1689049_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	50.2	5.7e-60
WP_002370008.1|1689011_1689983_-	recombinase RecT	NA	A0A1S5SAA8	Streptococcus_phage	45.9	5.7e-59
WP_002393052.1|1690033_1690288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002370011.1|1690262_1690481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002370012.1|1690584_1690809_-	hypothetical protein	NA	D2IZX4	Enterococcus_phage	67.1	4.9e-22
WP_002414895.1|1690805_1691105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002370016.1|1691191_1691608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002364354.1|1691955_1692132_-	helix-turn-helix transcriptional regulator	NA	D2IZW2	Enterococcus_phage	65.5	1.7e-14
WP_002370020.1|1692451_1692784_+	helix-turn-helix transcriptional regulator	NA	D2IZV9	Enterococcus_phage	55.5	3.0e-28
WP_002370021.1|1692801_1693146_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A097QQ08	Enterococcus_phage	74.6	2.6e-43
WP_002370022.1|1693175_1693574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002370023.1|1693591_1694314_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	48.4	4.1e-22
WP_002370024.1|1694408_1695776_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	97.8	3.9e-255
>prophage 9
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	1951463	2006399	2939973	integrase,tRNA,transposase,holin	Streptococcus_phage(25.0%)	49	1975093:1975109	2015545:2015561
WP_000221326.1|1951463_1952423_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002392705.1|1952709_1953723_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	22.6	3.9e-10
WP_002404002.1|1953877_1954423_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002354830.1|1954634_1955318_-|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_002354829.1|1955314_1955734_-|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_002354828.1|1955885_1956614_-	response regulator	NA	NA	NA	NA	NA
WP_002354827.1|1956594_1958364_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	28.5	4.2e-60
WP_002354826.1|1958455_1959274_-	membrane protein	NA	NA	NA	NA	NA
WP_002354825.1|1959286_1959958_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002354824.1|1959954_1960677_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	27.5	5.6e-19
WP_002392708.1|1961038_1961437_-	OsmC family protein	NA	NA	NA	NA	NA
WP_002354822.1|1961637_1961907_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002354818.1|1962017_1962167_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002404001.1|1962182_1963157_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_002383181.1|1963190_1963313_+	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_002404000.1|1963333_1964869_+	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
WP_002413934.1|1964926_1965901_-|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_002354811.1|1966088_1966859_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002354809.1|1966851_1967787_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.4	2.4e-22
WP_002354802.1|1968044_1968464_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002354800.1|1968476_1968968_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002365419.1|1968984_1969800_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_010784810.1|1969796_1970624_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002381047.1|1970771_1973291_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_002403998.1|1973345_1974932_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
1975093:1975109	attL	ACCGCATTTTTCAACTC	NA	NA	NA	NA
WP_002354788.1|1976077_1976638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002372037.1|1980539_1980947_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.9	3.6e-31
WP_002372035.1|1981304_1981664_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002372033.1|1981660_1983778_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.6	5.7e-245
WP_002403997.1|1983998_1984811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002403996.1|1984972_1986229_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	30.8	2.0e-48
WP_002403995.1|1986318_1986516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002403994.1|1986621_1987671_+|integrase	site-specific integrase	integrase	Q4ZC42	Staphylococcus_virus	27.6	7.4e-20
WP_002354786.1|1987727_1988120_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002365424.1|1988133_1988577_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_002354782.1|1988798_1989266_-	DNA starvation/stationary phase protection protein	NA	C1KFH1	Lactobacillus_virus	25.9	1.0e-05
WP_002354781.1|1989394_1990114_-	DUF5105 domain-containing protein	NA	NA	NA	NA	NA
WP_002354779.1|1990197_1991718_-	gluconokinase	NA	NA	NA	NA	NA
WP_002354778.1|1991826_1992519_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_002354777.1|1992567_1996221_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.8	1.4e-65
WP_002389470.1|1996387_2000002_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.5	2.0e-48
WP_002354774.1|2000372_2000714_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SAB3	Streptococcus_phage	42.5	5.5e-17
WP_002354773.1|2000713_2000944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002354768.1|2001118_2001334_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_002354765.1|2001472_2002465_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_002354763.1|2002728_2003358_-	chitin-binding protein	NA	NA	NA	NA	NA
WP_002381036.1|2004050_2005667_+	phosphatase PAP2/LCP family protein	NA	NA	NA	NA	NA
WP_002392818.1|2005996_2006140_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_073340360.1|2006258_2006399_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
2015545:2015561	attR	ACCGCATTTTTCAACTC	NA	NA	NA	NA
>prophage 10
NZ_CP008816	Enterococcus faecalis ATCC 29212 chromosome, complete genome	2939973	2512845	2567409	2939973	tRNA,transposase,integrase	Bacillus_phage(27.27%)	42	2517040:2517065	2567339:2567364
WP_002355365.1|2512845_2514015_-|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	28.9	3.6e-31
WP_002355366.1|2514058_2514289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
2517040:2517065	attL	ATTTACACAAAATTATTGACGCTCCC	NA	NA	NA	NA
WP_002355369.1|2517317_2518355_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002335374.1|2518380_2519319_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002355370.1|2519843_2520443_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	35.6	2.5e-28
WP_002294574.1|2522174_2522630_+	copper-responsive transcriptional repressor TcrY	NA	NA	NA	NA	NA
WP_002335389.1|2525184_2525391_+	copper chaperone TcrZ	NA	NA	NA	NA	NA
WP_010784692.1|2525529_2527602_+	copper-translocating P-type ATPase TcrB	NA	E4ZFI9	Streptococcus_phage	29.4	2.2e-60
WP_000653331.1|2528124_2531097_-|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	36.4	3.6e-197
WP_000238804.1|2531227_2531833_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	34.2	1.3e-21
WP_010784694.1|2531836_2532202_-	helix-turn-helix domain containing protein	NA	NA	NA	NA	NA
WP_010783490.1|2532179_2532764_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	52.2	1.0e-42
WP_002414917.1|2533007_2533496_+|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_002392382.1|2534885_2536094_+	YSIRK-targeted surface antigen transcriptional regulator	NA	NA	NA	NA	NA
WP_002358522.1|2536223_2536640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002384835.1|2536864_2537602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033072569.1|2537647_2538139_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	37.2	1.3e-11
WP_102882804.1|2538255_2538549_+	recombinase family protein	NA	NA	NA	NA	NA
WP_100815088.1|2538561_2538768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002363071.1|2538847_2539666_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002363072.1|2539821_2540529_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002363073.1|2540521_2542024_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002358535.1|2542034_2542517_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002358536.1|2543149_2543914_-	YibE/F family protein	NA	NA	NA	NA	NA
WP_002363074.1|2543900_2544965_-	YibE/F family protein	NA	NA	NA	NA	NA
WP_002382844.1|2545497_2545875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002363076.1|2545926_2546331_+	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_002363077.1|2546524_2547595_+	ammonium transporter	NA	NA	NA	NA	NA
WP_002363078.1|2547697_2548831_+	NAD(P)-binding domain-containing protein	NA	V9VEY6	Lactococcus_phage	26.7	2.2e-06
WP_002370911.1|2549899_2550211_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	65.6	1.6e-23
WP_002367939.1|2550316_2550592_-|transposase	transposase	transposase	A0A0N9S8A3	Staphylococcus_phage	40.9	1.1e-10
WP_002358549.1|2551100_2552267_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_002384845.1|2552623_2554699_+	family 31 glucosidase	NA	NA	NA	NA	NA
WP_002358551.1|2554698_2555484_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002358552.1|2555476_2556289_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002363085.1|2556313_2556796_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002358554.1|2556807_2557215_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002364888.1|2557319_2558627_+	xylose isomerase	NA	NA	NA	NA	NA
WP_002363087.1|2558688_2560179_+	xylulokinase	NA	NA	NA	NA	NA
WP_002364887.1|2562370_2565403_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.2	2.6e-17
WP_002367943.1|2565592_2566177_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_002364885.1|2566173_2567409_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
2567339:2567364	attR	ATTTACACAAAATTATTGACGCTCCC	NA	NA	NA	NA
