assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000743255.1_ASM74325v1	NZ_CP009072	Escherichia coli ATCC 25922 chromosome, complete genome	1	175340-175453	1	CRISPRCasFinder	no		cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA	NA|395aa|up_9|NZ_CP009072.1_154241_155426_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP009072.1_155499_156276_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP009072.1_156280_157930_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP009072.1_157930_162325_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP009072.1_162468_163092_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP009072.1_163088_164777_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP009072.1_164925_167553_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP009072.1_167699_168422_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NZ_CP009072.1_168561_172320_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP009072.1_173002_175288_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP009072.1_175477_176608_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP009072.1_176607_176862_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP009072.1_176915_177566_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP009072.1_177768_178845_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP009072.1_178849_180208_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP009072.1_180480_182109_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP009072.1_182098_183358_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP009072.1_183354_184545_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|309aa|down_8|NZ_CP009072.1_184737_185664_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP009072.1_185704_186508_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_000743255.1_ASM74325v1	NZ_CP009072	Escherichia coli ATCC 25922 chromosome, complete genome	2	2492697-2492843	2	CRISPRCasFinder	no		cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA|111aa|down_6|NZ_CP009072.1_2502023_2502356_-	NA|335aa|up_9|NZ_CP009072.1_2481252_2482257_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|311aa|up_8|NZ_CP009072.1_2482280_2483213_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP009072.1_2483223_2484444_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP009072.1_2485121_2485574_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP009072.1_2485618_2486623_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP009072.1_2486784_2487201_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|141aa|up_3|NZ_CP009072.1_2487378_2487801_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP009072.1_2487993_2489181_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP009072.1_2489227_2492083_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP009072.1_2492082_2492526_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP009072.1_2492879_2494391_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP009072.1_2494657_2495758_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP009072.1_2495757_2496840_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP009072.1_2496958_2498461_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP009072.1_2498590_2499610_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|637aa|down_5|NZ_CP009072.1_2499980_2501891_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|111aa|down_6|NZ_CP009072.1_2502023_2502356_-	NA	NA|110aa|down_7|NZ_CP009072.1_2503361_2503691_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_8|NZ_CP009072.1_2504020_2504581_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|282aa|down_9|NZ_CP009072.1_2504594_2505440_+	pfam13271, DUF4062, Domain of unknown function (DUF4062)
GCF_000743255.1_ASM74325v1	NZ_CP009072	Escherichia coli ATCC 25922 chromosome, complete genome	3	2718703-2718834	1	PILER-CR	no		cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA	NA|274aa|up_9|NZ_CP009072.1_2704864_2705686_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NZ_CP009072.1_2706141_2707290_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_7|NZ_CP009072.1_2707307_2710529_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NZ_CP009072.1_2710789_2711185_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NZ_CP009072.1_2711303_2711894_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NZ_CP009072.1_2711899_2712685_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NZ_CP009072.1_2712793_2714347_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NZ_CP009072.1_2714419_2715637_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_CP009072.1_2715764_2716907_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_CP009072.1_2716937_2718452_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_CP009072.1_2718924_2719695_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_CP009072.1_2719709_2720651_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_CP009072.1_2720673_2721960_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_CP009072.1_2721956_2722244_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NZ_CP009072.1_2722302_2723634_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NZ_CP009072.1_2723741_2724272_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NZ_CP009072.1_2724264_2726127_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NZ_CP009072.1_2726318_2726798_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|78aa|down_8|NZ_CP009072.1_2726883_2727117_+	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|105aa|down_9|NZ_CP009072.1_2727119_2727434_+	pfam01845, CcdB, CcdB protein
GCF_000743255.1_ASM74325v1	NZ_CP009072	Escherichia coli ATCC 25922 chromosome, complete genome	4	3388779-3388902	3	CRISPRCasFinder	no	DEDDh	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA,NA|30aa|down_7|NZ_CP009072.1_3397798_3397888_+	NA|471aa|up_9|NZ_CP009072.1_3378230_3379643_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP009072.1_3380200_3380410_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP009072.1_3380865_3381492_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP009072.1_3381512_3383615_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP009072.1_3383627_3384266_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP009072.1_3384329_3384998_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP009072.1_3384994_3385780_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP009072.1_3385783_3386596_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP009072.1_3386601_3388212_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP009072.1_3388337_3388643_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP009072.1_3389216_3390473_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP009072.1_3390513_3391887_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP009072.1_3392101_3392743_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP009072.1_3392782_3393931_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP009072.1_3394221_3395433_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP009072.1_3395545_3396478_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP009072.1_3396474_3397500_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP009072.1_3397798_3397888_+	NA	NA|390aa|down_8|NZ_CP009072.1_3398053_3399223_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP009072.1_3399368_3399950_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_000743255.1_ASM74325v1	NZ_CP009072	Escherichia coli ATCC 25922 chromosome, complete genome	5	4221514-4221605	4	CRISPRCasFinder	no		cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA|70aa|up_9|NZ_CP009072.1_4210764_4210974_-,NA	NA|70aa|up_9|NZ_CP009072.1_4210764_4210974_-	NA	NA|1321aa|up_8|NZ_CP009072.1_4211028_4214991_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP009072.1_4215030_4215669_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP009072.1_4215956_4217048_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP009072.1_4217047_4217740_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP009072.1_4217751_4218138_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP009072.1_4218145_4218946_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP009072.1_4218955_4219546_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP009072.1_4219556_4220051_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP009072.1_4220071_4221400_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP009072.1_4222028_4222625_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP009072.1_4222645_4222873_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP009072.1_4222910_4224152_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP009072.1_4224686_4225607_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP009072.1_4225606_4225912_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP009072.1_4226267_4226867_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP009072.1_4226863_4229410_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP009072.1_4229409_4230582_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP009072.1_4230711_4231404_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP009072.1_4231376_4232405_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_000743255.1_ASM74325v1	NZ_CP009074	Escherichia coli ATCC 25922 plasmid unnamed, complete sequence	1	21094-21213	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	NA|155aa|up_9|NZ_CP009074.1_15826_16291_-,NA|129aa|up_8|NZ_CP009074.1_16547_16934_-,NA|91aa|up_6|NZ_CP009074.1_17593_17866_-,NA|110aa|up_5|NZ_CP009074.1_18335_18665_-,NA|72aa|up_4|NZ_CP009074.1_18757_18973_-,NA|82aa|up_3|NZ_CP009074.1_18962_19208_-,NA|108aa|up_2|NZ_CP009074.1_19252_19576_-,NA|148aa|down_2|NZ_CP009074.1_23171_23615_+,NA|119aa|down_3|NZ_CP009074.1_23754_24111_+	NA|155aa|up_9|NZ_CP009074.1_15826_16291_-	NA	NA|129aa|up_8|NZ_CP009074.1_16547_16934_-	NA	NA|126aa|up_7|NZ_CP009074.1_17009_17387_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|91aa|up_6|NZ_CP009074.1_17593_17866_-	NA	NA|110aa|up_5|NZ_CP009074.1_18335_18665_-	NA	NA|72aa|up_4|NZ_CP009074.1_18757_18973_-	NA	NA|82aa|up_3|NZ_CP009074.1_18962_19208_-	NA	NA|108aa|up_2|NZ_CP009074.1_19252_19576_-	NA	NA|94aa|up_1|NZ_CP009074.1_19721_20003_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP009074.1_19992_20244_-	PRK02854, PRK02854, primosomal protein DnaT	NA|280aa|down_0|NZ_CP009074.1_21465_22305_+	pfam01051, Rep_3, Initiator Replication protein	NA|281aa|down_1|NZ_CP009074.1_22325_23168_+	pfam01051, Rep_3, Initiator Replication protein	NA|148aa|down_2|NZ_CP009074.1_23171_23615_+	NA	NA|119aa|down_3|NZ_CP009074.1_23754_24111_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
