The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	359285	403815	5764622	holin,protease,transposase	uncultured_Caudovirales_phage(40.0%)	41	NA	NA
WP_038605777.1|359285_360464_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.7	1.3e-25
WP_174446953.1|360460_361309_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_038605783.1|361375_362323_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_038605786.1|362774_364151_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_038605789.1|364543_365647_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_038605791.1|365732_365987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038605794.1|366264_366735_-	thioesterase family protein	NA	NA	NA	NA	NA
WP_038605797.1|366748_367714_-	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_038605800.1|367729_368614_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_038605802.1|368717_369662_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_038616182.1|369832_370774_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_038605804.1|370777_371197_-	DUF3010 family protein	NA	NA	NA	NA	NA
WP_038605807.1|371204_371612_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_038605809.1|371856_372834_+	dipeptidase	NA	NA	NA	NA	NA
WP_038605812.1|372909_373440_+	hydrocarbon-binding protein	NA	NA	NA	NA	NA
WP_038605814.1|373455_375516_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_038605817.1|375635_377585_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_038605819.1|377584_378808_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_038605821.1|378823_379594_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_038605823.1|380235_381528_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
WP_157686991.1|381672_381816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038605826.1|381814_382912_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
WP_038605829.1|382991_384617_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	49.2	1.3e-79
WP_038605832.1|384890_385121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028942233.1|385117_385420_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_038605837.1|385576_387514_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.0	2.2e-30
WP_157686992.1|387584_388022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038605839.1|388486_389527_-	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_038605841.1|389804_391058_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.2	7.0e-102
WP_038605844.1|391078_392329_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_038605847.1|392343_392673_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_038605849.1|392669_395687_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA	NA
WP_038605852.1|395829_396462_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_038605855.1|396473_397331_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_028942224.1|397464_398664_+	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	28.9	6.5e-12
WP_038605858.1|398737_399193_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_038605861.1|399681_399987_+	DUF3077 domain-containing protein	NA	NA	NA	NA	NA
WP_038605864.1|400128_400695_+	DUF2780 domain-containing protein	NA	NA	NA	NA	NA
WP_038605867.1|400701_402066_-	APC family permease	NA	NA	NA	NA	NA
WP_038605870.1|402242_403130_-	acyltransferase	NA	NA	NA	NA	NA
WP_038605873.1|403311_403815_+|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	1839368	1917106	5764622	holin,portal,integrase,head,terminase,tail,tRNA,capsid,protease,transposase	Pseudomonas_phage(58.33%)	89	1832335:1832362	1884687:1884714
1832335:1832362	attL	CCGGTGGGAGCGGGCTTGCCCCGCGATG	NA	NA	NA	NA
WP_174446939.1|1839368_1840343_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_038608937.1|1840479_1841622_+|integrase	tyrosine-type recombinase/integrase	integrase	L7TP61	Pseudomonas_virus	75.0	6.7e-168
WP_038608939.1|1841590_1841872_-	pyocin activator PrtN family protein	NA	A0A2K8HN48	Pseudomonas_phage	76.6	1.1e-31
WP_038608941.1|1841914_1842238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038608943.1|1842295_1842478_-	Lar family restriction alleviation protein	NA	NA	NA	NA	NA
WP_038608946.1|1842539_1842791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038608949.1|1842787_1843144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038608956.1|1843140_1843491_-	DUF4884 domain-containing protein	NA	Q333I1	Escherichia_virus	42.4	2.4e-07
WP_157687009.1|1843889_1844621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038608961.1|1844700_1844889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075226465.1|1844894_1846049_-	RNA-directed DNA polymerase	NA	A0A0N7AE80	Bacillus_phage	33.4	3.0e-46
WP_038608963.1|1846251_1846608_-	four helix bundle protein	NA	NA	NA	NA	NA
WP_038608965.1|1847344_1847950_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_038608968.1|1848001_1848190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038608971.1|1848283_1848745_-	hypothetical protein	NA	A0A2H4J101	uncultured_Caudovirales_phage	61.4	2.1e-48
WP_038608974.1|1848741_1848975_-	hypothetical protein	NA	A0A2H4J1H1	uncultured_Caudovirales_phage	55.4	1.5e-05
WP_038608976.1|1848971_1849241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038608978.1|1849263_1849647_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JA92	uncultured_Caudovirales_phage	60.0	7.5e-23
WP_038608980.1|1850175_1850898_-	helix-turn-helix transcriptional regulator	NA	W6MVG5	Pseudomonas_phage	51.2	5.5e-59
WP_038608982.1|1851003_1851216_+	helix-turn-helix domain-containing protein	NA	A0A0H5AUC6	Pseudomonas_phage	73.4	8.1e-19
WP_038608983.1|1851587_1852334_+	replication protein	NA	H2BD69	Pseudomonas_phage	70.7	4.7e-37
WP_038608988.1|1852326_1853706_+	replicative DNA helicase	NA	A0A127KNK8	Pseudomonas_phage	52.2	1.1e-124
WP_038608991.1|1853705_1853909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038608994.1|1853905_1854205_+	DUF1364 domain-containing protein	NA	A0A220NQY2	Salmonella_phage	68.8	2.6e-31
WP_038608997.1|1854198_1854630_+	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	83.3	1.1e-59
WP_038609000.1|1854626_1855931_+|integrase	site-specific integrase	integrase	A0A2D1GND4	Pseudomonas_phage	73.0	3.0e-180
WP_038609003.1|1855927_1856245_+	hypothetical protein	NA	A0A2D1GNG3	Pseudomonas_phage	58.1	9.9e-29
WP_038609006.1|1856256_1856820_+	hypothetical protein	NA	A0A2H4J2J2	uncultured_Caudovirales_phage	58.8	1.6e-69
WP_038609009.1|1856976_1857462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609012.1|1857535_1857859_+|holin	phage holin, lambda family	holin	A0A1W6JTC7	Pseudomonas_phage	57.3	3.0e-25
WP_038609015.1|1857858_1858185_+	HNH endonuclease	NA	A0A286N2R3	Klebsiella_phage	58.7	1.8e-25
WP_038609018.1|1858324_1858783_+|terminase	phage terminase small subunit P27 family	terminase	Q6DMU4	Streptococcus_phage	27.1	2.8e-08
WP_084589076.1|1858736_1860536_+|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	45.6	5.9e-134
WP_038609021.1|1860532_1860742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609023.1|1860741_1861938_+|portal	phage portal protein	portal	A0A2D1GNU4	Pseudomonas_phage	86.1	7.2e-205
WP_038609026.1|1861942_1862578_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2D1GNL2	Pseudomonas_phage	68.2	2.7e-78
WP_038609029.1|1862588_1863791_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	79.5	2.5e-181
WP_038609032.1|1863831_1864113_+	hypothetical protein	NA	A0A2D1GNQ9	Pseudomonas_phage	46.7	1.0e-21
WP_038609035.1|1864105_1864423_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2D1GNK0	Pseudomonas_phage	83.8	2.4e-46
WP_038609038.1|1864419_1864740_+|head	phage head closure protein	head	A0A2D1GNG1	Pseudomonas_phage	57.7	2.0e-24
WP_167335117.1|1864750_1864921_+	hypothetical protein	NA	A0A2D1GNQ5	Pseudomonas_phage	57.4	1.1e-05
WP_038609041.1|1864924_1865500_+	HK97 family phage protein	NA	A0A2D1GNN2	Pseudomonas_phage	62.3	2.0e-56
WP_038609044.1|1865492_1865879_+	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	86.7	1.2e-55
WP_038609047.1|1865934_1866435_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	84.6	7.2e-74
WP_038609049.1|1866474_1866804_+	hypothetical protein	NA	A0A2D1GNT5	Pseudomonas_phage	71.6	2.1e-34
WP_038609055.1|1867102_1867513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038616359.1|1867568_1870955_+	tape measure protein	NA	A0A2D1GNQ1	Pseudomonas_phage	52.0	5.9e-204
WP_038609058.1|1870954_1871305_+|tail	phage tail protein	tail	A0A2D1GNJ1	Pseudomonas_phage	56.5	2.0e-30
WP_038609061.1|1871342_1872044_+|tail	phage minor tail protein L	tail	A0A2D1GNF3	Pseudomonas_phage	79.1	1.5e-106
WP_038609065.1|1872047_1872830_+	C40 family peptidase	NA	A0A2D1GNP8	Pseudomonas_phage	78.0	1.4e-127
WP_038609068.1|1872826_1873408_+|tail	tail assembly protein	tail	A0A2D1GNM2	Pseudomonas_phage	73.2	1.7e-71
WP_038609071.1|1873462_1876996_+|tail	phage tail protein	tail	A0A2D1GNE3	Pseudomonas_phage	64.8	0.0e+00
WP_038609073.1|1876995_1878057_+	hypothetical protein	NA	A0A2H4JA10	uncultured_Caudovirales_phage	67.4	2.2e-141
WP_051939221.1|1878068_1879064_+	hypothetical protein	NA	A0A0S2SY45	Pseudomonas_phage	36.3	1.3e-45
WP_051939606.1|1879509_1879749_+|tail	tail fiber assembly protein	tail	NA	NA	NA	NA
WP_038609076.1|1879807_1880239_+	lysozyme	NA	A0A127KNA7	Pseudomonas_phage	75.9	1.7e-55
WP_038609078.1|1880235_1880748_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_038609081.1|1881437_1882328_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	33.6	1.8e-11
WP_051939223.1|1882317_1883520_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_038609084.1|1883796_1884570_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_038609087.1|1885105_1885726_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
1884687:1884714	attR	CCGGTGGGAGCGGGCTTGCCCCGCGATG	NA	NA	NA	NA
WP_038609090.1|1885853_1886984_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_038609093.1|1887003_1887381_+	RidA family protein	NA	NA	NA	NA	NA
WP_038609096.1|1887455_1888520_+	membrane protein	NA	NA	NA	NA	NA
WP_038609099.1|1888566_1890453_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.1	1.2e-31
WP_038609101.1|1890621_1891503_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038609104.1|1891627_1892074_+	PACE efflux transporter	NA	NA	NA	NA	NA
WP_038609110.1|1893398_1894085_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038609113.1|1894101_1894806_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038609116.1|1894875_1896186_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_038609117.1|1896427_1896742_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_038609119.1|1896949_1898515_+	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	53.5	1.0e-41
WP_038609121.1|1898537_1900235_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	35.3	1.6e-24
WP_038609123.1|1900350_1900440_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_038609125.1|1900448_1902143_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_038609128.1|1902153_1904208_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	26.8	1.4e-27
WP_038609131.1|1904224_1904785_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_038609134.1|1904794_1907455_+	sensor histidine kinase KdpD	NA	A0A1V0SGX0	Hokovirus	27.3	3.7e-07
WP_038609137.1|1907451_1908150_+	response regulator	NA	NA	NA	NA	NA
WP_038609140.1|1908257_1909298_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_038609143.1|1909455_1909734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609146.1|1909748_1910516_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_038609149.1|1910597_1911398_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_038609151.1|1911394_1911757_-	DUF962 domain-containing protein	NA	NA	NA	NA	NA
WP_038609153.1|1911832_1913311_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.5	7.2e-21
WP_038609155.1|1913397_1914204_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_038609157.1|1914362_1915781_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_038609159.1|1915955_1916816_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.1	2.3e-43
WP_038608001.1|1916812_1917106_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	2026713	2107295	5764622	tail,holin,integrase,transposase	Pseudomonas_phage(32.0%)	57	2088919:2088978	2116745:2116820
WP_038608001.1|2026713_2027007_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_051939191.1|2027003_2027864_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.1	2.3e-43
WP_038609380.1|2028038_2028593_-	UPF0149 family protein	NA	NA	NA	NA	NA
WP_038609383.1|2028764_2028998_+	Pathogenicity locus	NA	NA	NA	NA	NA
WP_038609386.1|2029098_2029323_+	MbtH family protein	NA	NA	NA	NA	NA
WP_038609389.1|2029333_2030053_+	thioesterase	NA	NA	NA	NA	NA
WP_038609392.1|2030124_2030676_+	hydrolase	NA	NA	NA	NA	NA
WP_038609395.1|2030753_2031422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609398.1|2031495_2032575_+	DUF1615 domain-containing protein	NA	NA	NA	NA	NA
WP_038609401.1|2032697_2033609_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_038609404.1|2033605_2034505_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_038609406.1|2034504_2035254_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.6	1.4e-09
WP_038609409.1|2035250_2036171_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_038609412.1|2036185_2036755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609414.1|2036751_2037072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609417.1|2037071_2037608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609420.1|2037604_2038801_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_038609422.1|2039035_2050084_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.1	4.2e-81
WP_051939227.1|2050086_2064837_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	24.6	8.1e-56
WP_038609425.1|2064833_2067956_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	25.5	4.1e-42
WP_038609428.1|2068722_2071194_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_051939231.1|2071339_2079868_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.5	2.9e-90
WP_038609431.1|2080001_2080853_-	formylglycine-generating enzyme family protein	NA	A0A7H6	Microcystis_virus	40.5	1.1e-34
WP_038609434.1|2080867_2082517_-	cyclic peptide export ABC transporter	NA	A0A1V0SD74	Indivirus	27.1	7.0e-09
WP_051939233.1|2082513_2083854_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA	NA
WP_038609437.1|2083962_2085243_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_038609439.1|2085259_2086621_-|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	tail	NA	NA	NA	NA
WP_038609442.1|2087444_2087885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609445.1|2087927_2088851_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
2088919:2088978	attL	TCTGGAGTATGGCCTAGAGTCTGTCGATTAGCCCGTAAACATTGGGCTAAAGATGAACGA	NA	NA	NA	NA
WP_038616389.1|2088981_2090175_-|integrase	site-specific integrase	integrase	J7HXC4	Pseudomonas_phage	51.2	7.1e-112
WP_038609448.1|2090402_2090726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609453.1|2091028_2091211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609462.1|2092758_2093184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609465.1|2093533_2093923_-	hypothetical protein	NA	A0A2H4J2C6	uncultured_Caudovirales_phage	58.5	9.6e-34
WP_157687012.1|2094441_2094951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609471.1|2095438_2095774_-	hypothetical protein	NA	A0A2H4JAQ1	uncultured_Caudovirales_phage	47.6	9.8e-19
WP_038609474.1|2095855_2096317_-	hypothetical protein	NA	A0A2H4J101	uncultured_Caudovirales_phage	61.4	6.2e-48
WP_038609477.1|2096313_2096583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167335118.1|2096961_2097138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084589078.1|2097455_2098253_-	helix-turn-helix transcriptional regulator	NA	A0A059VA53	Pseudomonas_phage	64.9	1.8e-79
WP_038609480.1|2098286_2098493_+	transcriptional regulator	NA	H2BD64	Pseudomonas_phage	75.0	2.8e-16
WP_038616395.1|2098710_2099373_+	phage regulatory protein/antirepressor Ant	NA	A0A1B0YZY9	Pseudomonas_phage	52.7	2.5e-50
WP_038609483.1|2099372_2100122_+	hypothetical protein	NA	A0A2I2MUI8	uncultured_Caudovirales_phage	81.9	6.9e-113
WP_038609486.1|2100121_2100808_+	Replication protein P	NA	B5WZY0	Pseudomonas_phage	50.0	3.5e-47
WP_038609489.1|2100804_2101008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609492.1|2101004_2101301_+	DUF1364 domain-containing protein	NA	A0A220NQY2	Salmonella_phage	67.4	2.0e-31
WP_157687013.1|2101297_2101465_+	hypothetical protein	NA	A0A1B0VMF9	Pseudomonas_phage	49.1	4.7e-06
WP_038609495.1|2101461_2101893_+	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	82.5	3.9e-60
WP_038609497.1|2102304_2102565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609499.1|2102640_2102964_+|holin	phage holin, lambda family	holin	A0A1W6JTC7	Pseudomonas_phage	54.5	1.2e-24
WP_051939235.1|2102963_2103275_+	HNH endonuclease	NA	A0A286N2R3	Klebsiella_phage	62.0	2.4e-27
WP_051939237.1|2103524_2103983_+	DUF2514 domain-containing protein	NA	A0A2H4J3Q6	uncultured_Caudovirales_phage	72.0	7.6e-38
WP_157687014.1|2103996_2104764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609508.1|2104944_2105151_+	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	56.7	3.0e-10
WP_038609511.1|2105200_2105392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038609514.1|2105483_2105909_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	35.8	3.2e-14
WP_004573994.1|2106137_2107295_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
2116745:2116820	attR	TCTGGAGTATGGCCTAGAGTCTGTCGATTAGCCCGTAAACATTGGGCTAAAGATGAACGAAATTTAATCCTGTACC	NA	NA	NA	NA
>prophage 4
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	2149385	2154894	5764622	integrase	Pseudomonas_phage(33.33%)	9	2150161:2150211	2156867:2156917
WP_002553164.1|2149385_2149688_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	38.9	1.8e-11
WP_010222411.1|2149668_2150025_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
2150161:2150211	attL	TGCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATTA	NA	NA	NA	NA
WP_038609638.1|2150277_2151456_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A059VF45	Pseudomonas_phage	69.3	7.7e-159
WP_051939243.1|2151774_2152134_-	DUF5406 domain-containing protein	NA	B0ZSH8	Halomonas_phage	56.5	5.0e-29
WP_051939245.1|2152186_2152498_-	hypothetical protein	NA	A0A2H4PHJ9	Dickeya_phage	44.0	2.3e-09
WP_038616418.1|2152558_2152798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051939615.1|2153144_2153486_+	hypothetical protein	NA	J7HXL1	Pseudomonas_phage	56.6	1.4e-25
WP_038609641.1|2153841_2154453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038609644.1|2154684_2154894_+	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	62.1	8.6e-13
2156867:2156917	attR	TGCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATTA	NA	NA	NA	NA
>prophage 5
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	3430622	3556043	5764622	coat,integrase,transposase	Salmonella_phage(18.18%)	112	3439014:3439050	3531666:3531681
WP_075226550.1|3430622_3431954_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_038612183.1|3432446_3432971_-	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	31.6	8.8e-06
WP_051939415.1|3432999_3433290_-	DUF2218 domain-containing protein	NA	NA	NA	NA	NA
WP_038612186.1|3433348_3434143_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_038612189.1|3434162_3434978_-	dioxygenase	NA	NA	NA	NA	NA
3439014:3439050	attL	GGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAA	NA	NA	NA	NA
WP_032495638.1|3439335_3440541_+	chromate efflux transporter	NA	NA	NA	NA	NA
3439014:3439050	attL	GGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAA	NA	NA	NA	NA
WP_038612200.1|3440551_3440857_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010791757.1|3441060_3442743_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_038612208.1|3442745_3443654_+	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_038612209.1|3443650_3444841_+	TniQ family protein	NA	NA	NA	NA	NA
WP_000904941.1|3444928_3445543_+	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	51.9	1.3e-37
WP_001087809.1|3445595_3445832_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_003465059.1|3445828_3446194_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_038612220.1|3446210_3447857_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.0	1.0e-39
WP_023083081.1|3447853_3448099_-	mercury resistance system transport protein MerF	NA	NA	NA	NA	NA
WP_000735441.1|3448101_3448377_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_001294667.1|3448392_3448743_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_000429838.1|3448814_3449249_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_034115140.1|3449518_3450079_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	97.6	9.6e-59
WP_032495636.1|3450082_3453049_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	97.1	0.0e+00
WP_032495635.1|3453225_3453621_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_038612238.1|3453647_3455015_-	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA	NA
WP_051939417.1|3455008_3456097_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_032495632.1|3456086_3456698_-	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_032495631.1|3456708_3457428_-	protocatechuate 3,4-dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_032489501.1|3457642_3459208_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_032489500.1|3459221_3459905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032489499.1|3459915_3460257_-	cytochrome c	NA	NA	NA	NA	NA
WP_032489498.1|3460308_3461784_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_032495629.1|3463303_3464413_-	NAD(P)-dependent alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.7	4.9e-30
WP_032495636.1|3465025_3467992_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	97.1	0.0e+00
WP_034115140.1|3467995_3468556_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	97.6	9.6e-59
WP_000429838.1|3468825_3469260_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001294667.1|3469331_3469682_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_000735441.1|3469697_3469973_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_023083081.1|3469975_3470221_+	mercury resistance system transport protein MerF	NA	NA	NA	NA	NA
WP_038612220.1|3470217_3471864_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.0	1.0e-39
WP_003465059.1|3471880_3472246_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_001087809.1|3472242_3472479_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_000904941.1|3472531_3473146_-	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	51.9	1.3e-37
WP_038612209.1|3473233_3474424_-	TniQ family protein	NA	NA	NA	NA	NA
WP_038612208.1|3474420_3475329_-	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_010791757.1|3475331_3477014_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_021264363.1|3477519_3479007_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	88.1	6.6e-240
WP_038612245.1|3479021_3479873_+	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	64.3	1.0e-96
WP_021264365.1|3479872_3480232_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA	NA
WP_021264366.1|3480277_3481240_+	SdiA-regulated domain-containing protein	NA	NA	NA	NA	NA
WP_051939419.1|3482356_3482584_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
3481286:3481322	attR	TTAGCGTACGATTTTTTCCGAATTCTGCGGGCTCCCC	NA	NA	NA	NA
WP_051939421.1|3482595_3483606_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
3481286:3481322	attR	TTAGCGTACGATTTTTTCCGAATTCTGCGGGCTCCCC	NA	NA	NA	NA
WP_038612250.1|3483739_3484342_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA	NA
WP_038612253.1|3484804_3485185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038612256.1|3485414_3486473_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_051939423.1|3486533_3487511_+	DUF2955 domain-containing protein	NA	NA	NA	NA	NA
WP_158491258.1|3488922_3489447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038612262.1|3489446_3491660_+	recombinase family protein	NA	NA	NA	NA	NA
WP_019364253.1|3493198_3494713_+|transposase	IS21-like element IS1491 family transposase	transposase	K4I413	Acidithiobacillus_phage	52.3	1.3e-145
WP_003290589.1|3494730_3495486_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	55.2	1.9e-73
WP_038612265.1|3495645_3497484_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0U1UNT3	Pseudomonas_phage	50.7	1.2e-102
WP_038612268.1|3498014_3498575_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_038612271.1|3498607_3500431_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_038612274.1|3500435_3501074_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA	NA
WP_051939428.1|3501152_3501560_-	helix-turn-helix domain-containing protein	NA	Q6QID2	Burkholderia_phage	39.4	2.6e-13
WP_038612277.1|3502214_3503522_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	30.9	2.7e-48
WP_096335676.1|3503678_3505202_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_038612283.1|3505217_3506381_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_038612286.1|3506401_3507853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038612289.1|3507849_3509307_+	alginate biosynthesis protein AlgE	NA	NA	NA	NA	NA
WP_038612292.1|3509321_3510749_+	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	33.4	1.4e-58
WP_038612295.1|3510758_3511853_+	alginate O-acetyltransferase	NA	NA	NA	NA	NA
WP_038612298.1|3511872_3512517_+	alginate O-acetyltransferase AlgF	NA	NA	NA	NA	NA
WP_038612301.1|3512525_3513920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038612304.1|3513910_3515026_+	polysaccharide lyase	NA	NA	NA	NA	NA
WP_051939637.1|3515049_3516504_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_038616766.1|3516481_3516925_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_038612307.1|3517043_3517442_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_038612312.1|3517554_3519171_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_038612315.1|3519212_3519986_-	OmpA family protein	NA	NA	NA	NA	NA
WP_038612318.1|3519997_3520402_-	DUF4398 domain-containing protein	NA	NA	NA	NA	NA
WP_038612320.1|3520749_3521160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157687043.1|3521178_3522081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038612326.1|3522140_3522635_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_038612329.1|3522622_3524305_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_038612332.1|3524422_3525367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038612335.1|3525458_3526529_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_038612339.1|3526525_3526975_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_038612342.1|3527059_3527875_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_038612345.1|3527912_3529016_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_038612348.1|3529022_3529592_-	DUF4174 domain-containing protein	NA	NA	NA	NA	NA
WP_038612352.1|3529813_3530314_+	DUF1772 domain-containing protein	NA	NA	NA	NA	NA
WP_038612354.1|3530394_3532755_-	DNA polymerase II	NA	A0A0P0YM26	Yellowstone_lake_phycodnavirus	26.9	7.7e-33
WP_174446965.1|3532797_3533970_-	MFS transporter	NA	NA	NA	NA	NA
WP_038612357.1|3534126_3535041_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038612359.1|3535037_3535958_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038612362.1|3536071_3536689_+	LysE family translocator	NA	NA	NA	NA	NA
WP_038616771.1|3536853_3537546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038612366.1|3537650_3538349_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_038612369.1|3538345_3538669_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_038612372.1|3538665_3539517_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_038612376.1|3539593_3541156_-	alkyl hydroperoxide reductase subunit F	NA	G3MA85	Bacillus_virus	33.6	9.5e-40
WP_038612379.1|3541277_3541841_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_051939432.1|3541975_3544519_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_038612382.1|3544539_3545280_-	molecular chaperone	NA	NA	NA	NA	NA
WP_038612385.1|3545341_3545869_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_038612389.1|3546064_3547423_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	30.3	2.2e-48
WP_038612395.1|3548602_3549442_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.8	1.9e-63
WP_038612398.1|3549664_3550630_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_084589158.1|3550626_3552972_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_038612405.1|3553040_3553832_-	molecular chaperone	NA	NA	NA	NA	NA
WP_096335678.1|3553873_3554353_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_038612408.1|3554380_3554914_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_038612411.1|3554931_3555462_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_038612413.1|3555512_3556043_-|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
>prophage 6
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	3722010	3733981	5764622	tRNA,integrase	uncultured_Caudovirales_phage(81.82%)	13	3719969:3719983	3725155:3725169
3719969:3719983	attL	AAAGTTGCGGAACAC	NA	NA	NA	NA
WP_038612759.1|3722010_3722220_-	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	63.8	1.7e-13
WP_038612761.1|3722233_3722731_-	DUF2514 domain-containing protein	NA	A0A2H4J3Q6	uncultured_Caudovirales_phage	72.6	5.5e-42
WP_051939459.1|3724170_3725118_+|integrase	integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	70.9	4.3e-120
WP_038612764.1|3725450_3726122_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	90.6	9.6e-106
3725155:3725169	attR	AAAGTTGCGGAACAC	NA	NA	NA	NA
WP_038612765.1|3726268_3727648_+	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.5	8.2e-27
WP_038612766.1|3727789_3728182_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.8	2.9e-54
WP_038612767.1|3728183_3728543_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	65.0	4.7e-35
WP_038612768.1|3728542_3728842_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	64.6	2.7e-28
WP_038612770.1|3728838_3729174_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	80.2	5.5e-46
WP_038612772.1|3729170_3730166_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	80.2	2.6e-155
WP_038612774.1|3730276_3731245_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_038612776.1|3731311_3732700_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_038612778.1|3732700_3733981_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.3	3.5e-96
>prophage 7
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	4456342	4463856	5764622	lysis	Pseudomonas_phage(33.33%)	8	NA	NA
WP_038613932.1|4456342_4457410_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.3	1.4e-111
WP_038613935.1|4457513_4457996_-	CinA family protein	NA	B5TK85	Pseudomonas_phage	79.2	7.4e-60
WP_084589131.1|4458055_4458457_-|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	58.8	3.9e-30
WP_096335715.1|4458478_4458673_+	excisionase	NA	Q774Z6	Bordetella_phage	42.6	3.5e-08
WP_038613938.1|4458642_4459899_+	DUF3596 domain-containing protein	NA	A0A1I9KF78	Aeromonas_phage	39.4	4.3e-67
WP_157687059.1|4459945_4460122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038613940.1|4460138_4460792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167335152.1|4461288_4463856_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.7	4.7e-28
>prophage 8
NZ_CP009048	Pseudomonas alkylphenolica strain KL28 chromosome, complete genome	5764622	4694139	4701905	5764622		Planktothrix_phage(16.67%)	10	NA	NA
WP_038614373.1|4694139_4694949_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.5	1.0e-24
WP_038616920.1|4695194_4696169_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	31.8	7.5e-35
WP_038614375.1|4696169_4696694_+	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	48.1	1.1e-27
WP_038614378.1|4696702_4697275_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_038614380.1|4697261_4697786_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_038614382.1|4697786_4698512_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	6.4e-23
WP_038614385.1|4698691_4700185_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_028942831.1|4700262_4700571_+	ribosome-associated translation inhibitor RaiA	NA	A0A0M7QCF2	Escherichia_phage	35.2	1.0e-06
WP_038614388.1|4700583_4701048_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_038614390.1|4701050_4701905_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.0	2.6e-07
