assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000755145.1_ASM75514v1	NZ_CP009228	Treponema putidum strain OMZ 758 (ATCC 700334) chromosome, complete genome	1	232873-232957	1	CRISPRCasFinder	no		WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	Orphan	TGTTTATCGAAACTCCTAATAAA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	NA|76aa|up_9|NZ_CP009228.1_223235_223463_-,NA|982aa|down_9|NZ_CP009228.1_248813_251759_-	NA|76aa|up_9|NZ_CP009228.1_223235_223463_-	NA	NA|87aa|up_8|NZ_CP009228.1_224105_224366_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|87aa|up_7|NZ_CP009228.1_224362_224623_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|462aa|up_6|NZ_CP009228.1_224888_226274_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|277aa|up_5|NZ_CP009228.1_226289_227120_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|535aa|up_4|NZ_CP009228.1_227253_228858_-	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|274aa|up_3|NZ_CP009228.1_229157_229979_+	NF033187, internalin_J, class 1 internalin InlJ	NA|260aa|up_2|NZ_CP009228.1_229975_230755_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|340aa|up_1|NZ_CP009228.1_230760_231780_-	pfam01032, FecCD, FecCD transport family	NA|312aa|up_0|NZ_CP009228.1_231779_232715_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|413aa|down_0|NZ_CP009228.1_232959_234198_-	cd03314, MAL, Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid	NA|486aa|down_1|NZ_CP009228.1_234279_235737_-	pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE)	NA|349aa|down_2|NZ_CP009228.1_235885_236932_-	COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]	NA|198aa|down_3|NZ_CP009228.1_236959_237553_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|571aa|down_4|NZ_CP009228.1_237618_239331_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|301aa|down_5|NZ_CP009228.1_239416_240319_+	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|305aa|down_6|NZ_CP009228.1_240308_241223_-	pfam14238, DUF4340, Domain of unknown function (DUF4340)	NA|261aa|down_7|NZ_CP009228.1_243428_244211_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|1534aa|down_8|NZ_CP009228.1_244215_248817_-	smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases	NA|982aa|down_9|NZ_CP009228.1_248813_251759_-	NA
GCF_000755145.1_ASM75514v1	NZ_CP009228	Treponema putidum strain OMZ 758 (ATCC 700334) chromosome, complete genome	2	334447-334571	2	CRISPRCasFinder	no		WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	Orphan	TAGCCGTGTTTTCGGTAATGGTGCAGTTTGCTATATTGATGATGCTG	47	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	NA|58aa|up_8|NZ_CP009228.1_323316_323490_-,NA|210aa|up_4|NZ_CP009228.1_328857_329487_+,NA|105aa|up_2|NZ_CP009228.1_331843_332158_-,NA	NA|169aa|up_9|NZ_CP009228.1_322791_323298_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|58aa|up_8|NZ_CP009228.1_323316_323490_-	NA	NA|431aa|up_7|NZ_CP009228.1_323554_324847_+	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|629aa|up_6|NZ_CP009228.1_324862_326749_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|665aa|up_5|NZ_CP009228.1_326772_328767_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|210aa|up_4|NZ_CP009228.1_328857_329487_+	NA	NA|514aa|up_3|NZ_CP009228.1_329768_331310_-	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]	NA|105aa|up_2|NZ_CP009228.1_331843_332158_-	NA	NA|213aa|up_1|NZ_CP009228.1_332467_333106_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|170aa|up_0|NZ_CP009228.1_333283_333793_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|255aa|down_0|NZ_CP009228.1_337976_338741_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|263aa|down_1|NZ_CP009228.1_339224_340013_-	sd00031, LRR_1, leucine-rich repeats	NA|869aa|down_2|NZ_CP009228.1_340112_342719_-	pfam13229, Beta_helix, Right handed beta helix region	NA|302aa|down_3|NZ_CP009228.1_343124_344030_+	pfam01145, Band_7, SPFH domain / Band 7 family	NA|272aa|down_4|NZ_CP009228.1_344026_344842_+	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|667aa|down_5|NZ_CP009228.1_344855_346856_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|289aa|down_6|NZ_CP009228.1_346944_347811_+	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme	NA|90aa|down_7|NZ_CP009228.1_347814_348084_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|699aa|down_8|NZ_CP009228.1_348195_350292_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|145aa|down_9|NZ_CP009228.1_350362_350797_+	PRK00601, dut, dUTP diphosphatase
GCF_000755145.1_ASM75514v1	NZ_CP009228	Treponema putidum strain OMZ 758 (ATCC 700334) chromosome, complete genome	3	1036305-1036536	1,1	PILER-CR,CRT	no	cas9,cas1,cas2,csn2	WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	Type II-B,Type II-A,Type II-C	GTTTGAGAGTAGTGTAATTTAAGATGGATCTCAA,GTTTGAGAGTAGTGTAATTTAAGATGGATCTCAA	34,34	0	0	NA	NA	NA:NA	2,3	3	TypeII-B,TypeII-A,TypeII-C	WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	NA,NA|243aa|down_2|NZ_CP009228.1_1040362_1041091_-,NA|81aa|down_4|NZ_CP009228.1_1042970_1043213_+	NA|333aa|up_9|NZ_CP009228.1_1022253_1023252_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|433aa|up_8|NZ_CP009228.1_1023214_1024513_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|440aa|up_7|NZ_CP009228.1_1024509_1025829_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|215aa|up_6|NZ_CP009228.1_1025838_1026483_-	smart00938, P-II, Nitrogen regulatory protein P-II	NA|494aa|up_5|NZ_CP009228.1_1026479_1027961_-	pfam07556, DUF1538, Protein of unknown function (DUF1538)	NA|625aa|up_4|NZ_CP009228.1_1027984_1029859_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	cas9|1396aa|up_3|NZ_CP009228.1_1030173_1034361_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|291aa|up_2|NZ_CP009228.1_1034357_1035230_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP009228.1_1035234_1035540_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|225aa|up_0|NZ_CP009228.1_1035536_1036211_+	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2	NA|147aa|down_0|NZ_CP009228.1_1036745_1037186_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|519aa|down_1|NZ_CP009228.1_1037255_1038812_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|243aa|down_2|NZ_CP009228.1_1040362_1041091_-	NA	NA|483aa|down_3|NZ_CP009228.1_1041453_1042902_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|81aa|down_4|NZ_CP009228.1_1042970_1043213_+	NA	NA|133aa|down_5|NZ_CP009228.1_1043209_1043608_+	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|349aa|down_6|NZ_CP009228.1_1043620_1044667_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|515aa|down_7|NZ_CP009228.1_1044663_1046208_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|523aa|down_8|NZ_CP009228.1_1046182_1047751_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|432aa|down_9|NZ_CP009228.1_1047725_1049021_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase
GCF_000755145.1_ASM75514v1	NZ_CP009228	Treponema putidum strain OMZ 758 (ATCC 700334) chromosome, complete genome	4	1591393-1591560	3	CRISPRCasFinder	no		WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	Orphan	CTTTGCGAAGTTGAGCGAAGCTCAGCGCTTTGCGGGCTTGGCGGTTTATGTTTAA	55	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,casR,PrimPol,cas9,cas1,cas2,csn2,DinG,csa3,DEDDh	NA|338aa|up_9|NZ_CP009228.1_1580457_1581471_+,NA|278aa|up_6|NZ_CP009228.1_1584284_1585118_-,NA|169aa|up_5|NZ_CP009228.1_1585110_1585617_-,NA	NA|338aa|up_9|NZ_CP009228.1_1580457_1581471_+	NA	NA|200aa|up_8|NZ_CP009228.1_1581400_1582000_+	pfam01725, Ham1p_like, Ham1 family	NA|700aa|up_7|NZ_CP009228.1_1582128_1584228_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|278aa|up_6|NZ_CP009228.1_1584284_1585118_-	NA	NA|169aa|up_5|NZ_CP009228.1_1585110_1585617_-	NA	NA|439aa|up_4|NZ_CP009228.1_1585826_1587143_-	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|237aa|up_3|NZ_CP009228.1_1587347_1588058_-	pfam14848, HU-DNA_bdg, DNA-binding domain	NA|73aa|up_2|NZ_CP009228.1_1588892_1589111_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|293aa|up_1|NZ_CP009228.1_1589279_1590158_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|309aa|up_0|NZ_CP009228.1_1590337_1591264_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|597aa|down_0|NZ_CP009228.1_1591756_1593547_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_1|NZ_CP009228.1_1594540_1595785_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|247aa|down_2|NZ_CP009228.1_1595807_1596548_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|255aa|down_3|NZ_CP009228.1_1596625_1597390_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|293aa|down_4|NZ_CP009228.1_1597655_1598534_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|287aa|down_5|NZ_CP009228.1_1601358_1602219_+	pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6	NA|405aa|down_6|NZ_CP009228.1_1602215_1603430_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|94aa|down_7|NZ_CP009228.1_1603936_1604218_+	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA|255aa|down_8|NZ_CP009228.1_1604688_1605453_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|100aa|down_9|NZ_CP009228.1_1606103_1606403_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase
