assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	1	688765-688864	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP009361.1_686702_686819_+,NA|230aa|down_3|NZ_CP009361.1_692609_693299_-,NA|130aa|down_5|NZ_CP009361.1_693935_694325_+,NA|100aa|down_6|NZ_CP009361.1_694462_694762_+	NA|336aa|up_9|NZ_CP009361.1_678498_679506_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP009361.1_680092_680890_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP009361.1_681250_681895_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP009361.1_682576_684727_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP009361.1_684872_685232_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP009361.1_685421_686138_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP009361.1_686137_686611_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP009361.1_686702_686819_+	NA	NA|215aa|up_1|NZ_CP009361.1_686963_687608_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP009361.1_687725_688592_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP009361.1_688881_690102_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|156aa|down_1|NZ_CP009361.1_690098_690566_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|down_2|NZ_CP009361.1_690808_692455_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|230aa|down_3|NZ_CP009361.1_692609_693299_-	NA	NA|148aa|down_4|NZ_CP009361.1_693425_693869_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_5|NZ_CP009361.1_693935_694325_+	NA	NA|100aa|down_6|NZ_CP009361.1_694462_694762_+	NA	NA|181aa|down_7|NZ_CP009361.1_694841_695384_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_8|NZ_CP009361.1_695478_696045_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_9|NZ_CP009361.1_696046_696505_-	PRK00124, PRK00124, YaiI/YqxD family protein
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	2	776497-776581	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	776523-776555|776523-776555	NZ_CP009361.1_1023183-1023215|NZ_CP009361.1_2331472-2331440	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|33aa|up_1|NZ_CP009361.1_774937_775036_+,NA	NA|357aa|up_9|NZ_CP009361.1_764946_766017_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP009361.1_766334_767390_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP009361.1_767553_768195_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP009361.1_768338_769205_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP009361.1_769568_770651_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP009361.1_770643_771318_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP009361.1_771378_771951_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP009361.1_772364_774896_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP009361.1_774937_775036_+	NA	NA|370aa|up_0|NZ_CP009361.1_775210_776321_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP009361.1_777089_777929_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP009361.1_778102_778753_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP009361.1_778749_778986_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP009361.1_779254_781240_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP009361.1_781247_784094_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP009361.1_784704_785637_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP009361.1_785642_786485_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP009361.1_786492_786978_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP009361.1_786985_788425_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP009361.1_788491_789427_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	3	834868-834947	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|187aa|up_9|NZ_CP009361.1_827842_828403_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP009361.1_828475_829093_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP009361.1_829248_829743_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP009361.1_830141_830564_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP009361.1_830711_831428_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP009361.1_831510_832050_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP009361.1_832199_832520_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP009361.1_832663_833020_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP009361.1_833177_833558_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP009361.1_833735_834614_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP009361.1_835204_835591_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP009361.1_835583_835880_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP009361.1_836129_837155_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP009361.1_837147_837843_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP009361.1_837860_838682_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP009361.1_839497_839692_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP009361.1_839925_840777_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP009361.1_841104_841866_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP009361.1_841963_843271_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP009361.1_843376_844627_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	4	883990-884075	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	884020-884045|884020-884045	NZ_CP009361.1_2076340-2076365|NZ_CP009361.1_2136425-2136450	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP009361.1_872879_874376_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP009361.1_874368_874698_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP009361.1_874709_875138_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP009361.1_875130_877536_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP009361.1_877666_878050_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP009361.1_878113_878707_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP009361.1_879121_879499_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP009361.1_879860_880988_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP009361.1_881295_882486_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP009361.1_882594_883839_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP009361.1_884233_885163_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP009361.1_885404_886784_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP009361.1_886773_887979_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP009361.1_888329_889661_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP009361.1_889986_890562_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP009361.1_890566_891091_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP009361.1_891106_891682_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP009361.1_891841_895318_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP009361.1_895318_898972_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP009361.1_899137_900040_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	5	1942133-1942260	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|NZ_CP009361.1_1934292_1934688_-,NA|51aa|up_6|NZ_CP009361.1_1935288_1935441_-,NA	NA|274aa|up_9|NZ_CP009361.1_1931435_1932257_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP009361.1_1932711_1934097_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP009361.1_1934292_1934688_-	NA	NA|51aa|up_6|NZ_CP009361.1_1935288_1935441_-	NA	NA|200aa|up_5|NZ_CP009361.1_1935465_1936065_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP009361.1_1936223_1936694_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP009361.1_1936698_1937841_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP009361.1_1937976_1938705_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP009361.1_1938691_1940149_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP009361.1_1940407_1941469_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP009361.1_1950266_1950713_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP009361.1_1950809_1951760_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP009361.1_1951765_1952221_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP009361.1_1952301_1953591_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP009361.1_1953883_1954978_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP009361.1_1955168_1956905_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP009361.1_1957195_1957738_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP009361.1_1958040_1959078_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP009361.1_1959229_1960207_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP009361.1_1960467_1961304_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	6	1976297-1976379	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCTGTGTTGGGGCCCCGCCAACCTGCA	27	1	5	1976324-1976352|1976324-1976352|1976324-1976352|1976324-1976352|1976324-1976352	NZ_CP009361.1_1976555-1976583|NZ_CP009361.1_688705-688677|NZ_CP009361.1_1023229-1023257|NZ_CP009361.1_1049464-1049492|NZ_CP009361.1_1650779-1650807	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP009361.1_1970503_1970779_+,NA|129aa|up_1|NZ_CP009361.1_1974761_1975148_-,NA|138aa|down_1|NZ_CP009361.1_1978053_1978467_-,NA|37aa|down_2|NZ_CP009361.1_1978495_1978606_-,NA|31aa|down_6|NZ_CP009361.1_1981611_1981704_-	NA|419aa|up_9|NZ_CP009361.1_1968426_1969683_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP009361.1_1969685_1969886_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP009361.1_1970032_1970497_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP009361.1_1970503_1970779_+	NA	NA|406aa|up_5|NZ_CP009361.1_1971056_1972274_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP009361.1_1972386_1973016_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP009361.1_1973005_1974049_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP009361.1_1974045_1974747_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP009361.1_1974761_1975148_-	NA	NA|253aa|up_0|NZ_CP009361.1_1975364_1976123_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP009361.1_1976878_1977865_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP009361.1_1978053_1978467_-	NA	NA|37aa|down_2|NZ_CP009361.1_1978495_1978606_-	NA	NA|244aa|down_3|NZ_CP009361.1_1978691_1979423_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP009361.1_1979424_1980738_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP009361.1_1981029_1981530_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP009361.1_1981611_1981704_-	NA	DEDDh|185aa|down_7|NZ_CP009361.1_1981920_1982475_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP009361.1_1982541_1983612_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP009361.1_1983858_1984389_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	7	1987091-1987394	1	CRT	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	NTCTNTGTTNGGGNCCCNNC	20	4	19	1987110-1987149|1987169-1987204|1987169-1987204|1987169-1987204|1987169-1987204|1987169-1987204|1987169-1987204|1987169-1987204|1987169-1987204|1987169-1987204|1987224-1987262|1987282-1987317|1987282-1987317|1987282-1987317|1987282-1987317|1987282-1987317|1987282-1987317|1987282-1987317|1987282-1987317	NZ_CP009361.1_789788-789827|NZ_CP009361.1_1987055-1987090|NZ_CP009361.1_256661-256626|NZ_CP009361.1_334891-334856|NZ_CP009361.1_743391-743356|NZ_CP009361.1_776562-776597|NZ_CP009361.1_1049399-1049434|NZ_CP009361.1_1770711-1770676|NZ_CP009361.1_2297090-2297125|NZ_CP009361.1_2437369-2437334|NZ_CP009361.1_789788-789826|NZ_CP009361.1_256662-256627|NZ_CP009361.1_334892-334857|NZ_CP009361.1_743392-743357|NZ_CP009361.1_776561-776596|NZ_CP009361.1_1049398-1049433|NZ_CP009361.1_1770712-1770677|NZ_CP009361.1_2297089-2297124|NZ_CP009361.1_2437370-2437335	NA	5	5	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|37aa|up_9|NZ_CP009361.1_1978495_1978606_-,NA|31aa|up_5|NZ_CP009361.1_1981611_1981704_-,NA|49aa|down_0|NZ_CP009361.1_1987699_1987846_-	NA|37aa|up_9|NZ_CP009361.1_1978495_1978606_-	NA	NA|244aa|up_8|NZ_CP009361.1_1978691_1979423_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP009361.1_1979424_1980738_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP009361.1_1981029_1981530_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP009361.1_1981611_1981704_-	NA	DEDDh|185aa|up_4|NZ_CP009361.1_1981920_1982475_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP009361.1_1982541_1983612_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP009361.1_1983858_1984389_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP009361.1_1984558_1985920_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP009361.1_1986000_1986948_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP009361.1_1987699_1987846_-	NA	NA|476aa|down_1|NZ_CP009361.1_1987884_1989312_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP009361.1_1989324_1990782_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP009361.1_1990783_1991086_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP009361.1_1991452_1992991_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP009361.1_1993079_1994279_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP009361.1_1994291_1996295_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP009361.1_1996298_1998491_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP009361.1_1998487_1999180_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP009361.1_1999362_1999665_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	8	2181159-2181248	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP009361.1_2176030_2176261_-,NA|364aa|up_0|NZ_CP009361.1_2180050_2181142_+,NA|35aa|down_0|NZ_CP009361.1_2181583_2181688_-,NA|53aa|down_1|NZ_CP009361.1_2182367_2182526_+	NA|237aa|up_9|NZ_CP009361.1_2171648_2172359_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP009361.1_2172479_2172923_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP009361.1_2173122_2173536_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP009361.1_2173984_2175358_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP009361.1_2176030_2176261_-	NA	NA|313aa|up_4|NZ_CP009361.1_2176291_2177230_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP009361.1_2177665_2178331_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP009361.1_2178482_2178803_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP009361.1_2178804_2179785_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP009361.1_2180050_2181142_+	NA	NA|35aa|down_0|NZ_CP009361.1_2181583_2181688_-	NA	NA|53aa|down_1|NZ_CP009361.1_2182367_2182526_+	NA	NA|286aa|down_2|NZ_CP009361.1_2183184_2184042_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP009361.1_2184109_2184892_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP009361.1_2185123_2186929_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP009361.1_2187609_2189148_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP009361.1_2189182_2191315_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP009361.1_2191326_2191761_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP009361.1_2191760_2192867_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|NZ_CP009361.1_2200862_2202218_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	9	2200173-2200374	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|364aa|up_9|NZ_CP009361.1_2180050_2181142_+,NA|35aa|up_8|NZ_CP009361.1_2181583_2181688_-,NA|53aa|up_7|NZ_CP009361.1_2182367_2182526_+,NA	NA|364aa|up_9|NZ_CP009361.1_2180050_2181142_+	NA	NA|35aa|up_8|NZ_CP009361.1_2181583_2181688_-	NA	NA|53aa|up_7|NZ_CP009361.1_2182367_2182526_+	NA	NA|286aa|up_6|NZ_CP009361.1_2183184_2184042_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP009361.1_2184109_2184892_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP009361.1_2185123_2186929_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP009361.1_2187609_2189148_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP009361.1_2189182_2191315_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP009361.1_2191326_2191761_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP009361.1_2191760_2192867_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP009361.1_2200862_2202218_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP009361.1_2202244_2203177_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP009361.1_2203178_2203988_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP009361.1_2204177_2205086_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP009361.1_2211349_2212414_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP009361.1_2212561_2214004_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP009361.1_2214192_2214666_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP009361.1_2214787_2216131_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP009361.1_2216308_2216992_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP009361.1_2217010_2218198_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000756205.1_ASM75620v1	NZ_CP009361	Staphylococcus aureus subsp. aureus strain ATCC 25923 chromosome, complete genome	10	2258782-2258907	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_8|NZ_CP009361.1_2249188_2249356_+,NA|61aa|up_1|NZ_CP009361.1_2257704_2257887_-,NA	NA|149aa|up_9|NZ_CP009361.1_2248499_2248946_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP009361.1_2249188_2249356_+	NA	NA|809aa|up_7|NZ_CP009361.1_2249352_2251779_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP009361.1_2251838_2252693_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP009361.1_2252903_2253719_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP009361.1_2254013_2254439_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP009361.1_2254829_2255534_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP009361.1_2255570_2257235_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP009361.1_2257704_2257887_-	NA	NA|60aa|up_0|NZ_CP009361.1_2258536_2258716_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP009361.1_2258964_2260401_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP009361.1_2260749_2261148_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP009361.1_2261161_2261599_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP009361.1_2261847_2262642_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP009361.1_2262646_2263453_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP009361.1_2263442_2264303_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP009361.1_2264299_2265109_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|NZ_CP009361.1_2265641_2266010_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|NZ_CP009361.1_2266026_2266971_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|NZ_CP009361.1_2267045_2267435_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
