assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000757825.1_ASM75782v1	NZ_CP009451	Cedecea neteri strain SSMD04 chromosome, complete genome	1	128501-128581	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3	Orphan	CCTCTCCCCAAAGGGGCGAGGGAGAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA,NA	NA|96aa|up_9|NZ_CP009451.1_119623_119911_+	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|252aa|up_8|NZ_CP009451.1_119919_120675_+	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|165aa|up_7|NZ_CP009451.1_120685_121180_+	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|356aa|up_6|NZ_CP009451.1_121187_122255_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|256aa|up_5|NZ_CP009451.1_122254_123022_+	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional	NA|263aa|up_4|NZ_CP009451.1_123021_123810_+	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|475aa|up_3|NZ_CP009451.1_123812_125237_+	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|142aa|up_2|NZ_CP009451.1_125226_125652_+	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD	NA|403aa|up_1|NZ_CP009451.1_125648_126857_+	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated	NA|439aa|up_0|NZ_CP009451.1_126880_128197_+	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase	NA|364aa|down_0|NZ_CP009451.1_128582_129674_-	TIGR04030, perox_Avi_7169, alkylhydroperoxidase domain protein, Avi_7169 family	NA|349aa|down_1|NZ_CP009451.1_129670_130717_-	TIGR04027, Luciferase-like_monooxygenase, putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family	NA|540aa|down_2|NZ_CP009451.1_130713_132333_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|287aa|down_3|NZ_CP009451.1_132329_133190_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|down_4|NZ_CP009451.1_133186_134131_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|down_5|NZ_CP009451.1_134140_135766_-	TIGR04028, extracellular_solute-binding_protein_family, ABC transporter substrate binding protein, KPN_01854 family	NA|80aa|down_6|NZ_CP009451.1_135884_136124_-	pfam10829, DUF2554, Protein of unknown function (DUF2554)	NA|108aa|down_7|NZ_CP009451.1_136320_136644_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|220aa|down_8|NZ_CP009451.1_136643_137303_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|183aa|down_9|NZ_CP009451.1_137408_137957_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_000757825.1_ASM75782v1	NZ_CP009451	Cedecea neteri strain SSMD04 chromosome, complete genome	2	2914540-2914624	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3	Orphan	TTTTGTTTGCACCCTCTCCCTGTGGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA,NA	NA|497aa|up_9|NZ_CP009451.1_2902459_2903950_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|422aa|up_8|NZ_CP009451.1_2904068_2905334_+	PRK06777, PRK06777, 4-aminobutyrate--2-oxoglutarate transaminase	NA|415aa|up_7|NZ_CP009451.1_2905466_2906711_+	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]	NA|368aa|up_6|NZ_CP009451.1_2906968_2908072_+	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein	NA|127aa|up_5|NZ_CP009451.1_2908763_2909144_-	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM	NA|370aa|up_4|NZ_CP009451.1_2909542_2910652_+	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein	NA|309aa|up_3|NZ_CP009451.1_2910823_2911750_+	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH	NA|427aa|up_2|NZ_CP009451.1_2911746_2913027_+	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional	NA|256aa|up_1|NZ_CP009451.1_2913023_2913791_+	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	NA|238aa|up_0|NZ_CP009451.1_2913792_2914506_+	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF	NA|439aa|down_0|NZ_CP009451.1_2915099_2916416_+	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|296aa|down_1|NZ_CP009451.1_2916533_2917421_+	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA	NA|282aa|down_2|NZ_CP009451.1_2917417_2918263_+	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|357aa|down_3|NZ_CP009451.1_2918266_2919337_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|247aa|down_4|NZ_CP009451.1_2919333_2920074_+	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	NA|122aa|down_5|NZ_CP009451.1_2920078_2920444_-	PRK10350, PRK10350, DUF2756 family protein	NA|581aa|down_6|NZ_CP009451.1_2920566_2922309_+	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed	NA|166aa|down_7|NZ_CP009451.1_2922816_2923314_-	PRK10140, PRK10140, N-acetyltransferase	NA|346aa|down_8|NZ_CP009451.1_2923865_2924903_+	PRK10206, PRK10206, putative oxidoreductase; Provisional	NA|232aa|down_9|NZ_CP009451.1_2925026_2925722_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain
GCF_000757825.1_ASM75782v1	NZ_CP009451	Cedecea neteri strain SSMD04 chromosome, complete genome	3	3184485-3184556	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3	Orphan	CCCTCTCCCTAAAAGGGAGAGGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3	NA,NA|272aa|down_5|NZ_CP009451.1_3189788_3190604_+	NA|473aa|up_9|NZ_CP009451.1_3170850_3172269_-	PRK11007, PRK11007, PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional	NA|316aa|up_8|NZ_CP009451.1_3172389_3173337_-	PRK09492, treR, HTH-type transcriptional regulator TreR	NA|906aa|up_7|NZ_CP009451.1_3173840_3176558_+	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA	NA|797aa|up_6|NZ_CP009451.1_3176673_3179064_+	cd06570, GH20_chitobiase-like_1, A functionally uncharacterized subgroup of  the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|129aa|up_5|NZ_CP009451.1_3179118_3179505_-	PRK11401, PRK11401, enamine/imine deaminase	NA|154aa|up_4|NZ_CP009451.1_3179578_3180040_-	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed	NA|311aa|up_3|NZ_CP009451.1_3180056_3180989_-	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]	NA|160aa|up_2|NZ_CP009451.1_3181256_3181736_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|490aa|up_1|NZ_CP009451.1_3181891_3183361_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|335aa|up_0|NZ_CP009451.1_3183434_3184439_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|305aa|down_0|NZ_CP009451.1_3184572_3185487_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|down_1|NZ_CP009451.1_3185500_3186721_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|335aa|down_2|NZ_CP009451.1_3187371_3188376_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|143aa|down_3|NZ_CP009451.1_3188539_3188968_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|254aa|down_4|NZ_CP009451.1_3189015_3189777_+	COG4445, MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|272aa|down_5|NZ_CP009451.1_3189788_3190604_+	NA	NA|197aa|down_6|NZ_CP009451.1_3190695_3191286_+	PRK10360, PRK10360, transcriptional regulator UhpA	NA|501aa|down_7|NZ_CP009451.1_3191285_3192788_+	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB	NA|443aa|down_8|NZ_CP009451.1_3192797_3194126_+	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC	NA|464aa|down_9|NZ_CP009451.1_3194264_3195656_+	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter
