assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	1	338676-338900	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCCCCGCCGGCGCCGCCGGTCGCGCCG	42	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|58aa|up_0|NZ_CP009449.1_331012_331186_-,NA|87aa|down_0|NZ_CP009449.1_339364_339625_+	NA|398aa|up_9|NZ_CP009449.1_321190_322384_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP009449.1_322419_324102_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP009449.1_324118_326314_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP009449.1_326427_327561_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP009449.1_327557_328178_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP009449.1_328274_328856_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP009449.1_328785_329511_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP009449.1_329600_330521_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP009449.1_330560_330989_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|NZ_CP009449.1_331012_331186_-	NA	NA|87aa|down_0|NZ_CP009449.1_339364_339625_+	NA	NA|537aa|down_1|NZ_CP009449.1_339621_341232_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP009449.1_341255_342164_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP009449.1_342387_344283_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP009449.1_344279_345896_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP009449.1_345892_349885_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP009449.1_349881_350190_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP009449.1_350192_351734_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP009449.1_351782_352076_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP009449.1_352105_352396_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	2	691003-691079	1	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP009449.1_676897_677305_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP009449.1_677364_678051_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP009449.1_678204_680838_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP009449.1_680860_683248_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP009449.1_683385_684108_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP009449.1_684104_684902_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP009449.1_684903_685791_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP009449.1_685796_687011_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP009449.1_687007_688039_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP009449.1_688035_689481_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP009449.1_692214_693765_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP009449.1_693816_694209_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP009449.1_694205_694463_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP009449.1_694645_695881_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP009449.1_696131_696545_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP009449.1_696541_696778_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP009449.1_696881_697388_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP009449.1_697501_697972_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP009449.1_698015_698777_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP009449.1_698833_699145_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	3	922592-922721	2	PILER-CR	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CCGCCGGCTCCGCCGGTGGCGCCGC	25	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|60aa|up_0|NZ_CP009449.1_921826_922006_+,NA|184aa|down_1|NZ_CP009449.1_925726_926278_-,NA|63aa|down_4|NZ_CP009449.1_928441_928630_-,NA|90aa|down_5|NZ_CP009449.1_928648_928918_-,NA|88aa|down_9|NZ_CP009449.1_931559_931823_+	NA|390aa|up_9|NZ_CP009449.1_912637_913807_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NZ_CP009449.1_913894_914911_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NZ_CP009449.1_915072_915714_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NZ_CP009449.1_915794_916850_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NZ_CP009449.1_916901_917294_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NZ_CP009449.1_917351_917774_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_3|NZ_CP009449.1_917735_918026_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_2|NZ_CP009449.1_918130_919036_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP009449.1_919054_919870_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|60aa|up_0|NZ_CP009449.1_921826_922006_+	NA	NA|215aa|down_0|NZ_CP009449.1_925101_925746_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP009449.1_925726_926278_-	NA	NA|241aa|down_2|NZ_CP009449.1_926358_927081_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP009449.1_927151_928180_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_4|NZ_CP009449.1_928441_928630_-	NA	NA|90aa|down_5|NZ_CP009449.1_928648_928918_-	NA	NA|259aa|down_6|NZ_CP009449.1_928868_929645_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_7|NZ_CP009449.1_929731_930544_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_8|NZ_CP009449.1_930611_931472_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|88aa|down_9|NZ_CP009449.1_931559_931823_+	NA
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	4	2021391-2022018	2,3	CRISPRCasFinder,PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGGCGCCGCCGGCCCCGCCGTTGCCGA,CGGCCCCGCCGGCGCCGCCGGCCCCGCCGTTGCCGAACA	28,39	1	2	2021845-2021864|2021845-2021864	NZ_CP009449.1_332866-332885|NZ_CP009449.1_821362-821343	NA:NA	11,2	11	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|222aa|up_2|NZ_CP009449.1_2017700_2018366_+,NA	NA|188aa|up_9|NZ_CP009449.1_2011454_2012018_+	pfam00823, PPE, PPE family	NA|273aa|up_8|NZ_CP009449.1_2012048_2012867_+	pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal	NA|119aa|up_7|NZ_CP009449.1_2013105_2013462_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|up_6|NZ_CP009449.1_2013615_2014320_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|up_5|NZ_CP009449.1_2014329_2015532_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|up_4|NZ_CP009449.1_2015853_2016285_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|301aa|up_3|NZ_CP009449.1_2016693_2017596_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|222aa|up_2|NZ_CP009449.1_2017700_2018366_+	NA	NA|235aa|up_1|NZ_CP009449.1_2018428_2019133_+	pfam13305, WHG, WHG domain	NA|488aa|up_0|NZ_CP009449.1_2019767_2021231_+	PRK07121, PRK07121, FAD-binding protein	NA|640aa|down_0|NZ_CP009449.1_2022564_2024484_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|548aa|down_1|NZ_CP009449.1_2024554_2026198_+	PRK05858, PRK05858, acetolactate synthase	NA|809aa|down_2|NZ_CP009449.1_2026212_2028639_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|down_3|NZ_CP009449.1_2028835_2029465_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|308aa|down_4|NZ_CP009449.1_2029457_2030381_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_5|NZ_CP009449.1_2030442_2030775_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|293aa|down_6|NZ_CP009449.1_2030791_2031670_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_7|NZ_CP009449.1_2031707_2032112_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|down_8|NZ_CP009449.1_2032351_2032840_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|248aa|down_9|NZ_CP009449.1_2032836_2033580_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	5	2129175-2129300	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP009449.1_2119660_2120068_-,NA|64aa|up_0|NZ_CP009449.1_2127599_2127791_+,NA|127aa|down_5|NZ_CP009449.1_2136909_2137290_-	NA|741aa|up_9|NZ_CP009449.1_2113628_2115851_-	PRK15061, PRK15061, catalase/peroxidase	NA|151aa|up_8|NZ_CP009449.1_2115888_2116341_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP009449.1_2116445_2117039_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP009449.1_2117121_2117727_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP009449.1_2117826_2118831_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP009449.1_2118930_2119683_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP009449.1_2119660_2120068_-	NA	NA|767aa|up_2|NZ_CP009449.1_2120202_2122503_+	PLN02892, PLN02892, isocitrate lyase	NA|1666aa|up_1|NZ_CP009449.1_2122672_2127670_-	pfam00823, PPE, PPE family	NA|64aa|up_0|NZ_CP009449.1_2127599_2127791_+	NA	NA|155aa|down_0|NZ_CP009449.1_2131420_2131885_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP009449.1_2131982_2132846_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP009449.1_2132883_2134155_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP009449.1_2134426_2135542_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP009449.1_2135532_2136873_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP009449.1_2136909_2137290_-	NA	NA|621aa|down_6|NZ_CP009449.1_2137446_2139309_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP009449.1_2139316_2139796_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP009449.1_2140032_2140806_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP009449.1_2140809_2141577_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	6	3027638-3028996	4,4,1	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	1	1	3028488-3028522	NZ_CP009449.1_3028997-3029031	II-B,III-A:II-B,III-A:II-B,III-A	18,18,18	18	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|NZ_CP009449.1_3021321_3021726_+,NA|64aa|up_7|NZ_CP009449.1_3021722_3021914_+,NA|86aa|up_5|NZ_CP009449.1_3023500_3023758_+,NA|104aa|up_4|NZ_CP009449.1_3023862_3024174_+,NA|203aa|up_3|NZ_CP009449.1_3024593_3025202_+,NA	NA|122aa|up_9|NZ_CP009449.1_3020883_3021249_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|NZ_CP009449.1_3021321_3021726_+	NA	NA|64aa|up_7|NZ_CP009449.1_3021722_3021914_+	NA	NA|385aa|up_6|NZ_CP009449.1_3022112_3023267_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP009449.1_3023500_3023758_+	NA	NA|104aa|up_4|NZ_CP009449.1_3023862_3024174_+	NA	NA|203aa|up_3|NZ_CP009449.1_3024593_3025202_+	NA	NA|227aa|up_2|NZ_CP009449.1_3025272_3025953_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|238aa|up_1|NZ_CP009449.1_3025966_3026680_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|271aa|up_0|NZ_CP009449.1_3026676_3027489_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NZ_CP009449.1_3032613_3032955_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009449.1_3032955_3033972_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NZ_CP009449.1_3035228_3036356_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NZ_CP009449.1_3036352_3037261_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP009449.1_3037241_3037952_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP009449.1_3037961_3038336_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP009449.1_3038332_3040771_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_7|NZ_CP009449.1_3040767_3041712_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP009449.1_3041889_3042435_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP009449.1_3042706_3043591_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	7	3030390-3031306	5,2,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	12,12,9	12	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|NZ_CP009449.1_3021321_3021726_+,NA|64aa|up_7|NZ_CP009449.1_3021722_3021914_+,NA|86aa|up_5|NZ_CP009449.1_3023500_3023758_+,NA|104aa|up_4|NZ_CP009449.1_3023862_3024174_+,NA|203aa|up_3|NZ_CP009449.1_3024593_3025202_+,NA	NA|122aa|up_9|NZ_CP009449.1_3020883_3021249_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|NZ_CP009449.1_3021321_3021726_+	NA	NA|64aa|up_7|NZ_CP009449.1_3021722_3021914_+	NA	NA|385aa|up_6|NZ_CP009449.1_3022112_3023267_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP009449.1_3023500_3023758_+	NA	NA|104aa|up_4|NZ_CP009449.1_3023862_3024174_+	NA	NA|203aa|up_3|NZ_CP009449.1_3024593_3025202_+	NA	NA|227aa|up_2|NZ_CP009449.1_3025272_3025953_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|238aa|up_1|NZ_CP009449.1_3025966_3026680_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|271aa|up_0|NZ_CP009449.1_3026676_3027489_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NZ_CP009449.1_3032613_3032955_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009449.1_3032955_3033972_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NZ_CP009449.1_3035228_3036356_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NZ_CP009449.1_3036352_3037261_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP009449.1_3037241_3037952_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP009449.1_3037961_3038336_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP009449.1_3038332_3040771_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_7|NZ_CP009449.1_3040767_3041712_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP009449.1_3041889_3042435_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP009449.1_3042706_3043591_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	8	3031427-3032565	6,3,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,15,12	15	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|NZ_CP009449.1_3021321_3021726_+,NA|64aa|up_7|NZ_CP009449.1_3021722_3021914_+,NA|86aa|up_5|NZ_CP009449.1_3023500_3023758_+,NA|104aa|up_4|NZ_CP009449.1_3023862_3024174_+,NA|203aa|up_3|NZ_CP009449.1_3024593_3025202_+,NA	NA|122aa|up_9|NZ_CP009449.1_3020883_3021249_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_8|NZ_CP009449.1_3021321_3021726_+	NA	NA|64aa|up_7|NZ_CP009449.1_3021722_3021914_+	NA	NA|385aa|up_6|NZ_CP009449.1_3022112_3023267_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP009449.1_3023500_3023758_+	NA	NA|104aa|up_4|NZ_CP009449.1_3023862_3024174_+	NA	NA|203aa|up_3|NZ_CP009449.1_3024593_3025202_+	NA	NA|227aa|up_2|NZ_CP009449.1_3025272_3025953_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|238aa|up_1|NZ_CP009449.1_3025966_3026680_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|271aa|up_0|NZ_CP009449.1_3026676_3027489_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NZ_CP009449.1_3032613_3032955_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009449.1_3032955_3033972_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm5gr7|376aa|down_2|NZ_CP009449.1_3035228_3036356_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_3|NZ_CP009449.1_3036352_3037261_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP009449.1_3037241_3037952_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP009449.1_3037961_3038336_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP009449.1_3038332_3040771_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_7|NZ_CP009449.1_3040767_3041712_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP009449.1_3041889_3042435_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP009449.1_3042706_3043591_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	9	3332277-3332374	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CTGTATTGGCTGAGTCAAGGGCGCGAGCT	29	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_8|NZ_CP009449.1_3323998_3324403_-,NA|62aa|up_1|NZ_CP009449.1_3330293_3330479_+,NA	NA|80aa|up_9|NZ_CP009449.1_3323781_3324021_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|135aa|up_8|NZ_CP009449.1_3323998_3324403_-	NA	NA|185aa|up_7|NZ_CP009449.1_3324483_3325038_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|205aa|up_6|NZ_CP009449.1_3325129_3325744_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|347aa|up_5|NZ_CP009449.1_3325753_3326794_+	PRK03352, PRK03352, DNA polymerase IV; Validated	NA|288aa|up_4|NZ_CP009449.1_3326847_3327711_-	PRK07832, PRK07832, SDR family oxidoreductase	NA|217aa|up_3|NZ_CP009449.1_3327774_3328425_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|493aa|up_2|NZ_CP009449.1_3328540_3330019_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|62aa|up_1|NZ_CP009449.1_3330293_3330479_+	NA	NA|491aa|up_0|NZ_CP009449.1_3330789_3332262_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|601aa|down_0|NZ_CP009449.1_3332379_3334182_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|115aa|down_1|NZ_CP009449.1_3334201_3334546_-	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain	NA|508aa|down_2|NZ_CP009449.1_3334702_3336226_+	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed	NA|759aa|down_3|NZ_CP009449.1_3336361_3338638_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|142aa|down_4|NZ_CP009449.1_3338943_3339369_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|108aa|down_5|NZ_CP009449.1_3339505_3339829_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|203aa|down_6|NZ_CP009449.1_3339825_3340434_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|137aa|down_7|NZ_CP009449.1_3340546_3340957_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|548aa|down_8|NZ_CP009449.1_3341097_3342741_-	TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose phosphate-specific	NA|133aa|down_9|NZ_CP009449.1_3342810_3343209_+	PRK14216, PRK14216, fluoride efflux transporter CrcB
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	10	3850205-3850299	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGGGCACTCGGGGGCGGCGCCCCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|80aa|up_4|NZ_CP009449.1_3845844_3846084_+,NA	NA|468aa|up_9|NZ_CP009449.1_3840006_3841410_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|456aa|up_8|NZ_CP009449.1_3841406_3842774_+	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|471aa|up_7|NZ_CP009449.1_3842738_3844151_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|263aa|up_6|NZ_CP009449.1_3844271_3845060_+	pfam01083, Cutinase, Cutinase	NA|227aa|up_5|NZ_CP009449.1_3845106_3845787_+	pfam01083, Cutinase, Cutinase	NA|80aa|up_4|NZ_CP009449.1_3845844_3846084_+	NA	NA|562aa|up_3|NZ_CP009449.1_3846058_3847744_+	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	NA|298aa|up_2|NZ_CP009449.1_3847705_3848599_-	COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]	NA|181aa|up_1|NZ_CP009449.1_3848543_3849086_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|348aa|up_0|NZ_CP009449.1_3849117_3850161_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|202aa|down_0|NZ_CP009449.1_3850311_3850917_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|140aa|down_1|NZ_CP009449.1_3850925_3851345_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|125aa|down_2|NZ_CP009449.1_3851348_3851723_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|38aa|down_3|NZ_CP009449.1_3851938_3852052_-	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|74aa|down_4|NZ_CP009449.1_3852084_3852306_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|286aa|down_5|NZ_CP009449.1_3852559_3853417_+	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family	NA|332aa|down_6|NZ_CP009449.1_3853489_3854485_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|203aa|down_7|NZ_CP009449.1_3854486_3855095_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|318aa|down_8|NZ_CP009449.1_3855616_3856570_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|365aa|down_9|NZ_CP009449.1_3856627_3857722_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	11	3914171-3915187	7,4	PILER-CR,CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TCGGCGCCGGCCCCGCCGGCTCCGCCGGCTCCGCCTTGTCCG,GNNNCGGCGGNNCCGGCGGNNCCGGCGG	42,28	1	1	3914636-3914661	NZ_CP009449.1_3902309-3902334	NA:NA	2,13	13	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|73aa|down_0|NZ_CP009449.1_3915680_3915899_-,NA|280aa|down_3|NZ_CP009449.1_3918502_3919342_+	NA|255aa|up_9|NZ_CP009449.1_3889676_3890441_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_CP009449.1_3890666_3891620_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_CP009449.1_3891644_3891836_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_CP009449.1_3892050_3893253_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NZ_CP009449.1_3893277_3894399_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_4|NZ_CP009449.1_3894469_3895978_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1374aa|up_3|NZ_CP009449.1_3896148_3900270_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP009449.1_3904818_3906366_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP009449.1_3906362_3907199_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP009449.1_3912773_3913430_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|73aa|down_0|NZ_CP009449.1_3915680_3915899_-	NA	NA|549aa|down_1|NZ_CP009449.1_3915895_3917542_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_2|NZ_CP009449.1_3917615_3918407_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_3|NZ_CP009449.1_3918502_3919342_+	NA	NA|237aa|down_4|NZ_CP009449.1_3920620_3921331_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP009449.1_3921395_3922439_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP009449.1_3922591_3923503_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP009449.1_3923518_3924583_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP009449.1_3924599_3925784_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP009449.1_3925825_3926857_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_000758245.1_ASM75824v1	NZ_CP009449	Mycobacterium bovis strain ATCC BAA-935, complete genome	12	4069614-4069702	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_7|NZ_CP009449.1_4060200_4060971_-,NA|90aa|up_2|NZ_CP009449.1_4066192_4066462_+,NA|233aa|up_0|NZ_CP009449.1_4068718_4069417_-,NA|126aa|down_6|NZ_CP009449.1_4074937_4075315_+	NA|351aa|up_9|NZ_CP009449.1_4057030_4058083_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_8|NZ_CP009449.1_4058582_4059446_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|NZ_CP009449.1_4060200_4060971_-	NA	NA|549aa|up_6|NZ_CP009449.1_4060967_4062614_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|NZ_CP009449.1_4062610_4063411_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|NZ_CP009449.1_4063466_4064393_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|NZ_CP009449.1_4064394_4066020_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|NZ_CP009449.1_4066192_4066462_+	NA	NA|652aa|up_1|NZ_CP009449.1_4066727_4068683_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP009449.1_4068718_4069417_-	NA	NA|173aa|down_0|NZ_CP009449.1_4069762_4070281_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP009449.1_4070281_4071265_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP009449.1_4071257_4072451_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP009449.1_4072456_4073278_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP009449.1_4073409_4074093_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP009449.1_4074092_4074830_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP009449.1_4074937_4075315_+	NA	NA|225aa|down_7|NZ_CP009449.1_4075413_4076088_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP009449.1_4076193_4076988_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP009449.1_4076994_4077450_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
