assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000761195.1_ASM76119v1	NZ_CP009290	Pseudomonas chlororaphis subsp. aurantiaca strain JD37 chromosome, complete genome	1	1346803-1347430	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	cas3,csa3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DinG,WYL	Type I-F	TTTCTAAGCTGCCTACACGGCAGTGAAG,TTTCTAAGCTGCCTACACGGCAGTGAAG,TTTCTAAGCTGCCTACACGGCAGTGAAG	28,28,28	0	0	NA	NA	I-F:I-F:I-F	10,9,9	10	TypeI-F	cas3,csa3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DinG,WYL	NA|128aa|up_4|NZ_CP009290.1_1341734_1342118_+,NA|80aa|up_1|NZ_CP009290.1_1345002_1345242_-,NA|119aa|down_9|NZ_CP009290.1_1359372_1359729_-	NA|435aa|up_9|NZ_CP009290.1_1336252_1337557_+	pfam00487, FA_desaturase, Fatty acid desaturase	NA|344aa|up_8|NZ_CP009290.1_1337553_1338585_+	cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase	NA|319aa|up_7|NZ_CP009290.1_1338611_1339568_+	cd03511, Rhizopine-oxygenase-like, This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins	NA|166aa|up_6|NZ_CP009290.1_1339616_1340114_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|505aa|up_5|NZ_CP009290.1_1340223_1341738_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|128aa|up_4|NZ_CP009290.1_1341734_1342118_+	NA	NA|425aa|up_3|NZ_CP009290.1_1342491_1343766_-	pfam02435, Glyco_hydro_68, Levansucrase/Invertase	NA|274aa|up_2|NZ_CP009290.1_1344171_1344993_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|80aa|up_1|NZ_CP009290.1_1345002_1345242_-	NA	NA|417aa|up_0|NZ_CP009290.1_1345389_1346640_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	cas6f|188aa|down_0|NZ_CP009290.1_1347560_1348124_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|341aa|down_1|NZ_CP009290.1_1348127_1349150_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|331aa|down_2|NZ_CP009290.1_1349182_1350175_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|463aa|down_3|NZ_CP009290.1_1350167_1351556_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1138aa|down_4|NZ_CP009290.1_1351933_1355347_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_5|NZ_CP009290.1_1355343_1356321_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|77aa|down_6|NZ_CP009290.1_1356598_1356829_+	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown]	NA|133aa|down_7|NZ_CP009290.1_1356828_1357227_+	PRK13725, PRK13725, tRNA(fMet)-specific endonuclease VapC	NA|650aa|down_8|NZ_CP009290.1_1357284_1359234_-	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain	NA|119aa|down_9|NZ_CP009290.1_1359372_1359729_-	NA
GCF_000761195.1_ASM76119v1	NZ_CP009290	Pseudomonas chlororaphis subsp. aurantiaca strain JD37 chromosome, complete genome	2	3670380-3670464	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DinG,WYL	Orphan	GTGTACATATTCGTTGCTGCGGTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DinG,WYL	NA|134aa|up_6|NZ_CP009290.1_3649376_3649778_-,NA|88aa|up_4|NZ_CP009290.1_3652555_3652819_+,NA	NA|580aa|up_9|NZ_CP009290.1_3645825_3647565_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|204aa|up_8|NZ_CP009290.1_3647561_3648173_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|201aa|up_7|NZ_CP009290.1_3648575_3649178_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|134aa|up_6|NZ_CP009290.1_3649376_3649778_-	NA	NA|390aa|up_5|NZ_CP009290.1_3649921_3651090_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|88aa|up_4|NZ_CP009290.1_3652555_3652819_+	NA	NA|4231aa|up_3|NZ_CP009290.1_3653050_3665743_-	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein	NA|389aa|up_2|NZ_CP009290.1_3665956_3667123_-	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|404aa|up_1|NZ_CP009290.1_3667717_3668929_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|474aa|up_0|NZ_CP009290.1_3668928_3670350_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|435aa|down_0|NZ_CP009290.1_3670500_3671805_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|805aa|down_1|NZ_CP009290.1_3672854_3675269_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|189aa|down_2|NZ_CP009290.1_3675265_3675832_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|398aa|down_3|NZ_CP009290.1_3675824_3677018_-	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|328aa|down_4|NZ_CP009290.1_3677014_3677998_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|160aa|down_5|NZ_CP009290.1_3678006_3678486_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|143aa|down_6|NZ_CP009290.1_3678634_3679063_+	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|144aa|down_7|NZ_CP009290.1_3679240_3679672_-	pfam11356, T2SSC, Type II secretion system protein C	NA|154aa|down_8|NZ_CP009290.1_3679780_3680242_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|208aa|down_9|NZ_CP009290.1_3680238_3680862_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
GCF_000761195.1_ASM76119v1	NZ_CP009290	Pseudomonas chlororaphis subsp. aurantiaca strain JD37 chromosome, complete genome	3	5675857-5676245	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DinG,WYL	Orphan	TTTTCTAAGCTGCCTATTCGGCAGTGAAC,TTTTCTAAGCTGCCTATTCGGCAGTGAAC,TTTTCTAAGCTGCCTATNCGGCAGTGAAC	29,29,29	0	0	NA	NA	I-F:I-F:I-F	6,6,6	6	Orphan	cas3,csa3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DinG,WYL	NA,NA|124aa|down_0|NZ_CP009290.1_5676485_5676857_-	NA|239aa|up_9|NZ_CP009290.1_5661575_5662292_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|298aa|up_8|NZ_CP009290.1_5662312_5663206_+	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|227aa|up_7|NZ_CP009290.1_5663220_5663901_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|386aa|up_6|NZ_CP009290.1_5664135_5665293_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|388aa|up_5|NZ_CP009290.1_5665878_5667042_+	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|261aa|up_4|NZ_CP009290.1_5667226_5668009_-	sd00010, SLR, Sel1-like repeat	NA|227aa|up_3|NZ_CP009290.1_5668012_5668693_-	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|758aa|up_2|NZ_CP009290.1_5668898_5671172_+	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]	NA|843aa|up_1|NZ_CP009290.1_5671450_5673979_+	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|514aa|up_0|NZ_CP009290.1_5674099_5675641_-	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|124aa|down_0|NZ_CP009290.1_5676485_5676857_-	NA	NA|581aa|down_1|NZ_CP009290.1_5677759_5679502_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|314aa|down_2|NZ_CP009290.1_5679513_5680455_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|954aa|down_3|NZ_CP009290.1_5680454_5683316_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|332aa|down_4|NZ_CP009290.1_5683612_5684608_+	PRK11303, PRK11303, catabolite repressor/activator	NA|263aa|down_5|NZ_CP009290.1_5684610_5685399_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|677aa|down_6|NZ_CP009290.1_5685400_5687431_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|279aa|down_7|NZ_CP009290.1_5687636_5688473_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|187aa|down_8|NZ_CP009290.1_5688469_5689030_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|735aa|down_9|NZ_CP009290.1_5689092_5691297_-	pfam07793, DUF1631, Protein of unknown function (DUF1631)
