assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000770175.1_ASM77017v1	NZ_CP009615	Mycobacterium abscessus strain DJO-44274, complete genome	1	566686-566814	1	CRISPRCasFinder	no		csa3,cas3,WYL,cas4,DEDDh,DinG	Orphan	TTCCCGTGGTGGCTCCGATAGCGGCTCGCGGGGTGGTTGGGGCGA	45	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA|476aa|up_5|NZ_CP009615.1_560216_561644_-,NA|200aa|down_5|NZ_CP009615.1_577415_578015_+	NA|836aa|up_9|NZ_CP009615.1_554323_556831_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|268aa|up_8|NZ_CP009615.1_556994_557798_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|310aa|up_7|NZ_CP009615.1_557887_558817_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|432aa|up_6|NZ_CP009615.1_558861_560157_-	cd14792, GH27, glycosyl hydrolase family 27 (GH27)	NA|476aa|up_5|NZ_CP009615.1_560216_561644_-	NA	NA|127aa|up_4|NZ_CP009615.1_561755_562136_+	pfam05423, Mycobact_memb, Mycobacterium membrane protein	NA|300aa|up_3|NZ_CP009615.1_562125_563025_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|219aa|up_2|NZ_CP009615.1_563120_563777_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|222aa|up_1|NZ_CP009615.1_563820_564486_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|190aa|up_0|NZ_CP009615.1_564536_565106_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|447aa|down_0|NZ_CP009615.1_567017_568358_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|428aa|down_1|NZ_CP009615.1_568442_569726_-	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|1011aa|down_2|NZ_CP009615.1_569760_572793_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|814aa|down_3|NZ_CP009615.1_572951_575393_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|607aa|down_4|NZ_CP009615.1_575413_577234_-	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_5|NZ_CP009615.1_577415_578015_+	NA	NA|128aa|down_6|NZ_CP009615.1_578027_578411_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|308aa|down_7|NZ_CP009615.1_578491_579415_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|121aa|down_8|NZ_CP009615.1_579411_579774_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|294aa|down_9|NZ_CP009615.1_579791_580673_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
GCF_000770175.1_ASM77017v1	NZ_CP009615	Mycobacterium abscessus strain DJO-44274, complete genome	2	3793084-3793171	2	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,cas4,DEDDh,DinG	Type I-A	CCAGCCACCGCACACGCCGTTGTAGCAGCCG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA,NA|194aa|down_9|NZ_CP009615.1_3802348_3802930_-	NA|402aa|up_9|NZ_CP009615.1_3782421_3783627_+	PRK03858, PRK03858, DNA polymerase IV; Validated	NA|261aa|up_8|NZ_CP009615.1_3783653_3784436_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|249aa|up_7|NZ_CP009615.1_3784561_3785308_+	PRK02101, PRK02101, peroxide stress protein YaaA	NA|597aa|up_6|NZ_CP009615.1_3785297_3787088_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|145aa|up_5|NZ_CP009615.1_3787181_3787616_-	pfam05610, DUF779, Protein of unknown function (DUF779)	NA|507aa|up_4|NZ_CP009615.1_3787596_3789117_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|52aa|up_3|NZ_CP009615.1_3789192_3789348_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|671aa|up_2|NZ_CP009615.1_3789508_3791521_+	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters	NA|199aa|up_1|NZ_CP009615.1_3791471_3792068_-	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_0|NZ_CP009615.1_3792126_3793047_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|148aa|down_0|NZ_CP009615.1_3793455_3793899_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|379aa|down_1|NZ_CP009615.1_3793935_3795072_-	pfam03583, LIP, Secretory lipase	NA|72aa|down_2|NZ_CP009615.1_3795094_3795310_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|278aa|down_3|NZ_CP009615.1_3795364_3796198_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|801aa|down_4|NZ_CP009615.1_3796227_3798630_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|226aa|down_5|NZ_CP009615.1_3798747_3799425_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|367aa|down_6|NZ_CP009615.1_3799421_3800522_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|244aa|down_7|NZ_CP009615.1_3800524_3801256_-	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional	NA|363aa|down_8|NZ_CP009615.1_3801280_3802369_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|194aa|down_9|NZ_CP009615.1_3802348_3802930_-	NA
GCF_000770175.1_ASM77017v1	NZ_CP009615	Mycobacterium abscessus strain DJO-44274, complete genome	3	4517917-4518019	3	CRISPRCasFinder	no		csa3,cas3,WYL,cas4,DEDDh,DinG	Orphan	GCGCTGACCAACCCCGGCCTGACCA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA|662aa|up_4|NZ_CP009615.1_4510637_4512623_-,NA	NA|638aa|up_9|NZ_CP009615.1_4503693_4505607_-	PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated	NA|337aa|up_8|NZ_CP009615.1_4505910_4506921_-	pfam01083, Cutinase, Cutinase	NA|326aa|up_7|NZ_CP009615.1_4507160_4508138_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|334aa|up_6|NZ_CP009615.1_4508395_4509397_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|325aa|up_5|NZ_CP009615.1_4509474_4510449_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|662aa|up_4|NZ_CP009615.1_4510637_4512623_-	NA	NA|305aa|up_3|NZ_CP009615.1_4512636_4513551_-	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase	NA|188aa|up_2|NZ_CP009615.1_4513547_4514111_-	cd03395, PAP2_like_4, PAP2_like_4 proteins	NA|654aa|up_1|NZ_CP009615.1_4514107_4516069_-	pfam17994, Glft2_N, Galactofuranosyltransferase 2 N-terminal	NA|413aa|up_0|NZ_CP009615.1_4516052_4517291_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|273aa|down_0|NZ_CP009615.1_4520270_4521089_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|255aa|down_1|NZ_CP009615.1_4521085_4521850_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|266aa|down_2|NZ_CP009615.1_4521850_4522648_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|258aa|down_3|NZ_CP009615.1_4522695_4523469_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|241aa|down_4|NZ_CP009615.1_4523513_4524236_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|188aa|down_5|NZ_CP009615.1_4524281_4524845_+	pfam05257, CHAP, CHAP domain	NA|297aa|down_6|NZ_CP009615.1_4524845_4525736_-	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold	NA|137aa|down_7|NZ_CP009615.1_4525748_4526159_-	pfam14552, Tautomerase_2, Tautomerase enzyme	NA|322aa|down_8|NZ_CP009615.1_4526162_4527128_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|238aa|down_9|NZ_CP009615.1_4527258_4527972_+	COG3910, COG3910, Predicted ATPase [General function prediction only]
GCF_000770175.1_ASM77017v1	NZ_CP009615	Mycobacterium abscessus strain DJO-44274, complete genome	4	4648209-4648310	4	CRISPRCasFinder	no		csa3,cas3,WYL,cas4,DEDDh,DinG	Orphan	GGCGGATACGGTGCTCCGCCTCAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA|74aa|up_3|NZ_CP009615.1_4643871_4644093_-,NA|74aa|up_2|NZ_CP009615.1_4644267_4644489_+,NA	NA|146aa|up_9|NZ_CP009615.1_4639286_4639724_-	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|389aa|up_8|NZ_CP009615.1_4639762_4640929_-	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp	NA|205aa|up_7|NZ_CP009615.1_4640928_4641543_-	pfam06693, DUF1190, Protein of unknown function (DUF1190)	NA|147aa|up_6|NZ_CP009615.1_4641865_4642306_-	pfam13630, SdpI, SdpI/YfhL protein family	NA|315aa|up_5|NZ_CP009615.1_4642305_4643250_-	TIGR04033, conserved_hypothetical_protein, antimicrobial peptide system protein, SdpB family	NA|199aa|up_4|NZ_CP009615.1_4643288_4643885_-	pfam17418, SdpA, Sporulation delaying protein SdpA	NA|74aa|up_3|NZ_CP009615.1_4643871_4644093_-	NA	NA|74aa|up_2|NZ_CP009615.1_4644267_4644489_+	NA	NA|143aa|up_1|NZ_CP009615.1_4644650_4645079_-	pfam13630, SdpI, SdpI/YfhL protein family	NA|211aa|up_0|NZ_CP009615.1_4645644_4646277_-	pfam09770, PAT1, Topoisomerase II-associated protein PAT1	NA|155aa|down_0|NZ_CP009615.1_4649051_4649516_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|502aa|down_1|NZ_CP009615.1_4649512_4651018_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|486aa|down_2|NZ_CP009615.1_4651014_4652472_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|505aa|down_3|NZ_CP009615.1_4652468_4653983_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|421aa|down_4|NZ_CP009615.1_4653979_4655242_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|629aa|down_5|NZ_CP009615.1_4655241_4657128_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|225aa|down_6|NZ_CP009615.1_4657134_4657809_-	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|239aa|down_7|NZ_CP009615.1_4657866_4658583_-	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|88aa|down_8|NZ_CP009615.1_4658782_4659046_+	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed	NA|142aa|down_9|NZ_CP009615.1_4659200_4659626_+	pfam10756, bPH_6, Bacterial PH domain
