assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000772245.1_ASM77224v1	NZ_CP007241	Streptococcus pyogenes strain 1E1, complete genome	1	828633-829328	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	10,10,6	10	TypeII-C,TypeII-B,TypeII-A	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_CP007241.1_818093_818735_+,NA	NA|452aa|up_9|NZ_CP007241.1_816614_817970_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP007241.1_818093_818735_+	NA	NA|377aa|up_7|NZ_CP007241.1_818797_819928_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP007241.1_819937_820690_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP007241.1_820689_821454_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP007241.1_821453_822086_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP007241.1_822564_826671_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP007241.1_826670_827540_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP007241.1_827536_827878_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP007241.1_827867_828530_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|60aa|down_0|NZ_CP007241.1_829458_829638_+	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate	NA|49aa|down_1|NZ_CP007241.1_829701_829848_+	PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional	NA|611aa|down_2|NZ_CP007241.1_829971_831804_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|336aa|down_3|NZ_CP007241.1_832066_833074_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|146aa|down_4|NZ_CP007241.1_833259_833697_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_5|NZ_CP007241.1_833826_834846_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_6|NZ_CP007241.1_835052_835478_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_7|NZ_CP007241.1_835496_835988_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_8|NZ_CP007241.1_836004_836814_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_9|NZ_CP007241.1_836810_837638_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
GCF_000772245.1_ASM77224v1	NZ_CP007241	Streptococcus pyogenes strain 1E1, complete genome	2	1104265-1104375	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	CAGCTTCTTCTGATTGTAAAGCGTCTG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|495aa|up_9|NZ_CP007241.1_1092128_1093613_+	PRK13663, PRK13663, hypothetical protein; Provisional	NA|134aa|up_8|NZ_CP007241.1_1093717_1094119_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|464aa|up_7|NZ_CP007241.1_1095133_1096525_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|484aa|up_6|NZ_CP007241.1_1096573_1098025_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|164aa|up_5|NZ_CP007241.1_1098232_1098724_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|431aa|up_4|NZ_CP007241.1_1098716_1100009_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|322aa|up_3|NZ_CP007241.1_1100110_1101076_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|287aa|up_2|NZ_CP007241.1_1101077_1101938_-	PRK07281, PRK07281, methionyl aminopeptidase	NA|428aa|up_1|NZ_CP007241.1_1101953_1103237_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|181aa|up_0|NZ_CP007241.1_1103245_1103788_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|420aa|down_0|NZ_CP007241.1_1105036_1106296_-	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed	NA|399aa|down_1|NZ_CP007241.1_1106469_1107666_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|786aa|down_2|NZ_CP007241.1_1108202_1110560_-	COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]	NA|314aa|down_3|NZ_CP007241.1_1110763_1111705_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|91aa|down_4|NZ_CP007241.1_1111679_1111952_-	pfam11676, DUF3272, Protein of unknown function (DUF3272)	NA|557aa|down_5|NZ_CP007241.1_1111977_1113648_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|166aa|down_6|NZ_CP007241.1_1113647_1114145_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|270aa|down_7|NZ_CP007241.1_1114289_1115099_+	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]	NA|88aa|down_8|NZ_CP007241.1_1115151_1115415_-	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|209aa|down_9|NZ_CP007241.1_1115494_1116121_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_000772245.1_ASM77224v1	NZ_CP007241	Streptococcus pyogenes strain 1E1, complete genome	3	1231090-1231325	2,3,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-C,Type I-U, Type I-U?	TGATATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	36,32,32	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	TypeI-C,TypeI-U,TypeI-U?	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NZ_CP007241.1_1221028_1222264_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_CP007241.1_1222537_1223218_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_CP007241.1_1223359_1223833_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_CP007241.1_1223998_1224715_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_CP007241.1_1224728_1225808_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_CP007241.1_1225880_1227614_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP007241.1_1227610_1228351_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_CP007241.1_1228438_1229545_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP007241.1_1229587_1230211_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP007241.1_1230223_1230934_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP007241.1_1231473_1231767_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas4|225aa|down_1|NZ_CP007241.1_1232799_1233474_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_2|NZ_CP007241.1_1233475_1234324_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_3|NZ_CP007241.1_1234328_1236224_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_4|NZ_CP007241.1_1236223_1236952_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_5|NZ_CP007241.1_1237084_1239493_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_6|NZ_CP007241.1_1239646_1242295_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_7|NZ_CP007241.1_1242296_1242860_-	pfam13238, AAA_18, AAA domain	NA|67aa|down_8|NZ_CP007241.1_1242856_1243057_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|132aa|down_9|NZ_CP007241.1_1243460_1243856_-	PRK07758, PRK07758, hypothetical protein; Provisional
