assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000772485.1_ASM77248v1	NZ_CP006741	Bifidobacterium longum subsp. longum GT15 chromosome, complete genome	1	245316-245684	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,casR	Orphan	CGATGACCCGTGGAATCAACCGCA	24	0	0	NA	NA	NA	6	6	Orphan	csa3,cas3,DEDDh,WYL,casR	NA|201aa|up_5|NZ_CP006741.1_238866_239469_+,NA|99aa|down_2|NZ_CP006741.1_248054_248351_+,NA|207aa|down_7|NZ_CP006741.1_252952_253573_+	NA|242aa|up_9|NZ_CP006741.1_235241_235967_+	PRK10847, PRK10847, DedA family protein	NA|317aa|up_8|NZ_CP006741.1_236189_237140_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|356aa|up_7|NZ_CP006741.1_237146_238214_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|219aa|up_6|NZ_CP006741.1_238213_238870_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|201aa|up_5|NZ_CP006741.1_238866_239469_+	NA	NA|96aa|up_4|NZ_CP006741.1_239753_240041_+	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|126aa|up_3|NZ_CP006741.1_240046_240424_+	pfam07811, TadE, TadE-like protein	NA|126aa|up_2|NZ_CP006741.1_240473_240851_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|377aa|up_1|NZ_CP006741.1_240899_242030_+	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|200aa|up_0|NZ_CP006741.1_242227_242827_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|201aa|down_0|NZ_CP006741.1_245959_246562_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|378aa|down_1|NZ_CP006741.1_246558_247692_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|99aa|down_2|NZ_CP006741.1_248054_248351_+	NA	NA|428aa|down_3|NZ_CP006741.1_248578_249862_+	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|255aa|down_4|NZ_CP006741.1_250222_250987_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|189aa|down_5|NZ_CP006741.1_251042_251609_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|365aa|down_6|NZ_CP006741.1_251690_252785_-	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|207aa|down_7|NZ_CP006741.1_252952_253573_+	NA	NA|489aa|down_8|NZ_CP006741.1_253907_255374_+	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|639aa|down_9|NZ_CP006741.1_255865_257782_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated
GCF_000772485.1_ASM77248v1	NZ_CP006741	Bifidobacterium longum subsp. longum GT15 chromosome, complete genome	2	1138983-1139066	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,casR	Orphan	ATTTCGCGGAAACCGTACGATGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,casR	NA,NA	NA|266aa|up_9|NZ_CP006741.1_1126786_1127584_+	pfam04452, Methyltrans_RNA, RNA methyltransferase	NA|113aa|up_8|NZ_CP006741.1_1127632_1127971_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|392aa|up_7|NZ_CP006741.1_1127989_1129165_+	pfam02562, PhoH, PhoH-like protein	NA|183aa|up_6|NZ_CP006741.1_1129154_1129703_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|478aa|up_5|NZ_CP006741.1_1129778_1131212_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|355aa|up_4|NZ_CP006741.1_1131213_1132278_+	PRK00089, era, GTPase Era; Reviewed	NA|388aa|up_3|NZ_CP006741.1_1134783_1135947_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|102aa|up_2|NZ_CP006741.1_1135962_1136268_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|475aa|up_1|NZ_CP006741.1_1136267_1137692_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|346aa|up_0|NZ_CP006741.1_1137827_1138865_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|207aa|down_0|NZ_CP006741.1_1139293_1139914_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|376aa|down_1|NZ_CP006741.1_1140137_1141265_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|300aa|down_2|NZ_CP006741.1_1141461_1142361_+	PRK12334, PRK12334, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|263aa|down_3|NZ_CP006741.1_1142608_1143397_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|87aa|down_4|NZ_CP006741.1_1143648_1143909_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|627aa|down_5|NZ_CP006741.1_1144055_1145936_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|470aa|down_6|NZ_CP006741.1_1145935_1147345_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|353aa|down_7|NZ_CP006741.1_1147424_1148483_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|377aa|down_8|NZ_CP006741.1_1148711_1149842_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|455aa|down_9|NZ_CP006741.1_1150219_1151584_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA
GCF_000772485.1_ASM77248v1	NZ_CP006741	Bifidobacterium longum subsp. longum GT15 chromosome, complete genome	3	2037586-2037671	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,casR	NA|30aa|up_5|NZ_CP006741.1_2029674_2029764_-,NA|211aa|up_4|NZ_CP006741.1_2029955_2030588_-,NA|243aa|down_1|NZ_CP006741.1_2039751_2040480_+	NA|141aa|up_9|NZ_CP006741.1_2024996_2025419_+	pfam02082, Rrf2, Transcriptional regulator	NA|539aa|up_8|NZ_CP006741.1_2025553_2027170_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|297aa|up_7|NZ_CP006741.1_2027802_2028693_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NZ_CP006741.1_2028823_2029522_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NZ_CP006741.1_2029674_2029764_-	NA	NA|211aa|up_4|NZ_CP006741.1_2029955_2030588_-	NA	NA|513aa|up_3|NZ_CP006741.1_2030715_2032254_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NZ_CP006741.1_2032268_2033393_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NZ_CP006741.1_2033490_2034654_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|158aa|up_0|NZ_CP006741.1_2034655_2035129_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NZ_CP006741.1_2038476_2039544_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|243aa|down_1|NZ_CP006741.1_2039751_2040480_+	NA	NA|348aa|down_2|NZ_CP006741.1_2040520_2041564_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NZ_CP006741.1_2042096_2043665_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NZ_CP006741.1_2044474_2045275_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NZ_CP006741.1_2045481_2047662_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|304aa|down_6|NZ_CP006741.1_2047955_2048867_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_7|NZ_CP006741.1_2048948_2049491_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_8|NZ_CP006741.1_2049590_2050586_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|133aa|down_9|NZ_CP006741.1_2050666_2051065_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCF_000772485.1_ASM77248v1	NZ_CP006741	Bifidobacterium longum subsp. longum GT15 chromosome, complete genome	4	2191557-2191630	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,casR	Orphan	AAATGACGAACCGGGACAGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,casR	NA|59aa|up_0|NZ_CP006741.1_2190537_2190714_+,NA	NA|378aa|up_9|NZ_CP006741.1_2178110_2179244_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|up_8|NZ_CP006741.1_2179244_2180936_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|83aa|up_7|NZ_CP006741.1_2181004_2181253_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_6|NZ_CP006741.1_2181275_2181584_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1023aa|up_5|NZ_CP006741.1_2181735_2184804_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|402aa|up_4|NZ_CP006741.1_2185116_2186322_-	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase	NA|315aa|up_3|NZ_CP006741.1_2186428_2187373_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|483aa|up_2|NZ_CP006741.1_2187548_2188997_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|365aa|up_1|NZ_CP006741.1_2188993_2190088_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NZ_CP006741.1_2190537_2190714_+	NA	NA|485aa|down_0|NZ_CP006741.1_2191709_2193164_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NZ_CP006741.1_2193300_2194413_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NZ_CP006741.1_2194507_2195824_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NZ_CP006741.1_2195984_2197577_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|222aa|down_4|NZ_CP006741.1_2199656_2200322_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|422aa|down_5|NZ_CP006741.1_2200330_2201596_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|311aa|down_6|NZ_CP006741.1_2201682_2202615_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_7|NZ_CP006741.1_2202708_2203962_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_8|NZ_CP006741.1_2204010_2205336_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|449aa|down_9|NZ_CP006741.1_2205584_2206931_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed
