The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009461	Klebsiella pneumoniae strain XH209 chromosome, complete genome	5118878	1417011	1423915	5118878	tRNA	Planktothrix_phage(33.33%)	6	NA	NA
WP_004175147.1|1417011_1417875_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
WP_004180550.1|1417885_1418659_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
WP_004151134.1|1418898_1419795_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
WP_023301761.1|1420037_1421399_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	94.5	8.8e-207
WP_004175198.1|1421717_1422440_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
WP_038434483.1|1422436_1423915_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
>prophage 2
NZ_CP009461	Klebsiella pneumoniae strain XH209 chromosome, complete genome	5118878	2384911	2392967	5118878		Escherichia_phage(85.71%)	8	NA	NA
WP_160540602.1|2384911_2386546_+	DUF4981 domain-containing protein	NA	L0N6M2	Herpes_simplex_virus	55.8	3.1e-182
WP_004176258.1|2386600_2387866_+	MFS transporter	NA	NA	NA	NA	NA
WP_001620097.1|2387896_2388985_-	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	100.0	8.0e-211
WP_004176262.1|2389071_2389332_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	98.8	5.4e-41
WP_004176269.1|2389629_2390490_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_002210513.1|2390510_2391272_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_071843243.1|2391532_2392354_+	hypothetical protein	NA	A0A077SLF7	Escherichia_phage	100.0	4.0e-98
WP_002210516.1|2392346_2392967_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 3
NZ_CP009461	Klebsiella pneumoniae strain XH209 chromosome, complete genome	5118878	2773372	2843994	5118878	capsid,terminase,holin,head,tRNA,tail,integrase,portal,protease	Klebsiella_phage(51.92%)	96	2800189:2800203	2844334:2844348
WP_004892876.1|2773372_2773873_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_002901080.1|2773989_2774436_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
WP_004140469.1|2774419_2775214_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_074439533.1|2775321_2776497_+	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_004140471.1|2776528_2777221_-	CTP synthase	NA	NA	NA	NA	NA
WP_020802835.1|2777366_2777876_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_014343000.1|2777880_2778219_+	DUF488 family protein	NA	NA	NA	NA	NA
WP_004176548.1|2778208_2778448_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
WP_004176549.1|2778748_2779762_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.9e-12
WP_004150782.1|2779819_2779921_+	YoaK family small membrane protein	NA	NA	NA	NA	NA
WP_004892898.1|2779920_2779995_+	protein YoaJ	NA	NA	NA	NA	NA
WP_004140488.1|2780112_2780238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004140489.1|2780297_2780561_-	DUF2534 family protein	NA	NA	NA	NA	NA
WP_004150783.1|2780691_2781330_-	leucine efflux protein LeuE	NA	NA	NA	NA	NA
WP_023302064.1|2781419_2782334_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
WP_004148037.1|2782795_2782915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150784.1|2782995_2784039_-	type II asparaginase	NA	NA	NA	NA	NA
WP_004140494.1|2784341_2785550_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_023302065.1|2785623_2787408_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
WP_021313530.1|2787414_2788305_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023302066.1|2788425_2789934_+	UbiD family decarboxylase	NA	NA	NA	NA	NA
WP_020804938.1|2789967_2790132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004150790.1|2790244_2790931_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_032409986.1|2791328_2791508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004150791.1|2791547_2792180_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_004140506.1|2792746_2792944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004183659.1|2793059_2794070_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_004140511.1|2794066_2795473_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004179357.1|2795528_2796416_-	manganese catalase family protein	NA	NA	NA	NA	NA
WP_004140514.1|2796432_2796939_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004148027.1|2796965_2797460_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_004150795.1|2797550_2797736_-	general stress protein	NA	NA	NA	NA	NA
WP_137013050.1|2797955_2798144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004140529.1|2798359_2799553_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_004140530.1|2799665_2799893_+	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
WP_019704434.1|2799913_2800099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048263900.1|2800046_2800253_+	hypothetical protein	NA	NA	NA	NA	NA
2800189:2800203	attL	TGGCTGGCGTTCTTT	NA	NA	NA	NA
WP_004150797.1|2800341_2800665_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_004150798.1|2800657_2801050_+	amino acid-binding protein	NA	NA	NA	NA	NA
WP_004213085.1|2801046_2801760_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004892953.1|2802032_2802185_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
WP_024623019.1|2802363_2802735_-	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	50.0	3.5e-25
WP_038434515.1|2803590_2804013_-	hypothetical protein	NA	K7P834	Enterobacteria_phage	44.5	1.8e-25
WP_023307377.1|2804183_2807960_-|tail	tail fiber domain-containing protein	tail	A0A2H5BNP5	Klebsiella_phage	34.1	4.1e-161
WP_038434516.1|2808016_2811085_-	kinase	NA	A0A286S259	Klebsiella_phage	91.0	0.0e+00
WP_017880229.1|2811081_2811462_-	hypothetical protein	NA	A0A286S2A6	Klebsiella_phage	100.0	4.6e-73
WP_024623174.1|2811471_2811954_-	DUF1833 family protein	NA	A0A286S2B1	Klebsiella_phage	91.2	1.9e-79
WP_021312569.1|2812134_2812605_-	hypothetical protein	NA	A0A286S298	Klebsiella_phage	68.4	2.2e-64
WP_038434517.1|2812604_2815145_-|tail	phage tail length tape measure protein	tail	A0A286S1S3	Klebsiella_phage	72.9	0.0e+00
WP_004899620.1|2815206_2815584_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_038434518.1|2815647_2815911_-	hypothetical protein	NA	A0A286S1P2	Klebsiella_phage	89.7	1.8e-39
WP_038434519.1|2815913_2816297_-|tail	phage tail assembly protein	tail	A0A286S1N4	Klebsiella_phage	93.2	2.7e-57
WP_000115125.1|2816340_2816832_-	hypothetical protein	NA	A0A286S1Q8	Klebsiella_phage	100.0	2.3e-88
WP_004216812.1|2816888_2817254_-	DUF3168 domain-containing protein	NA	A0A286S1R1	Klebsiella_phage	92.6	1.7e-61
WP_004143897.1|2817250_2817790_-	HK97 gp10 family phage protein	NA	A0A286S249	Klebsiella_phage	98.9	3.0e-94
WP_038434520.1|2817782_2818115_-|head	phage head closure protein	head	A0A286S2A2	Klebsiella_phage	99.1	2.6e-56
WP_038434521.1|2818116_2818329_-	hypothetical protein	NA	A0A286S2A5	Klebsiella_phage	74.3	1.1e-15
WP_017880223.1|2818389_2818716_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A286S294	Klebsiella_phage	100.0	7.5e-56
WP_044067369.1|2818663_2818906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038434522.1|2818942_2820106_-|capsid	phage major capsid protein	capsid	A0A286S1R4	Klebsiella_phage	99.5	3.8e-211
WP_004216821.1|2820117_2820798_-|head,protease	HK97 family phage prohead protease	head,protease	A0A286S1N1	Klebsiella_phage	100.0	1.6e-124
WP_038434523.1|2820803_2822081_-|portal	phage portal protein	portal	A0A286S1N5	Klebsiella_phage	99.8	5.3e-246
WP_004143904.1|2822083_2823616_-|terminase	terminase	terminase	A0A286S1M9	Klebsiella_phage	100.0	3.9e-296
WP_004143905.1|2823625_2824060_-	hypothetical protein	NA	A0A286S1P9	Klebsiella_phage	100.0	6.2e-74
WP_032412811.1|2824182_2824392_-	hypothetical protein	NA	A0A286N2R4	Klebsiella_phage	84.1	6.3e-24
WP_032412813.1|2824404_2824695_-	HNH endonuclease	NA	A0A286N2R3	Klebsiella_phage	95.8	5.8e-52
WP_038434524.1|2824755_2824977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032412817.1|2825720_2825921_-	hypothetical protein	NA	A0A1L6Z528	Klebsiella_phage	73.3	2.9e-18
WP_071843244.1|2826298_2826478_-	hypothetical protein	NA	A0A286SGR9	Klebsiella_phage	92.7	3.9e-22
WP_032412821.1|2826428_2826704_-	hypothetical protein	NA	A0A286N2Q8	Klebsiella_phage	89.0	3.8e-08
WP_032412824.1|2826700_2827048_-	hypothetical protein	NA	A0A286N2Q7	Klebsiella_phage	71.3	1.2e-35
WP_032412827.1|2827044_2827584_-	glycoside hydrolase family 108 protein	NA	A0A286N2Q6	Klebsiella_phage	97.8	1.3e-100
WP_139108922.1|2827580_2827880_-|holin	holin	holin	A0A286N2Q5	Klebsiella_phage	82.8	1.0e-38
WP_023149836.1|2828626_2829727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023149835.1|2829723_2830041_+	STAS-like domain-containing protein	NA	NA	NA	NA	NA
WP_023149834.1|2830040_2830502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023149833.1|2830538_2830883_-	antitermination protein Q lambdoid prophage DLP12	NA	A0A0P0ZCW0	Stx2-converting_phage	85.8	3.0e-55
WP_038434526.1|2830901_2831882_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	67.2	1.1e-134
WP_032412833.1|2831894_2832272_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	73.6	2.3e-48
WP_038434527.1|2832281_2833091_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	69.3	1.2e-110
WP_038434528.1|2833087_2834056_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	65.4	4.3e-83
WP_001208720.1|2834045_2834225_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	73.1	4.6e-15
WP_038434530.1|2834462_2834924_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	87.5	4.9e-69
WP_071843245.1|2834958_2835201_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	80.3	1.3e-25
WP_038434531.1|2835298_2835994_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	72.4	2.5e-88
WP_038434532.1|2836787_2837705_+	recombination-associated protein RdgC	NA	A0A1W6JP69	Morganella_phage	36.5	2.0e-45
WP_038434533.1|2837794_2838094_+	hypothetical protein	NA	K7PJS4	Enterobacterial_phage	47.6	3.2e-13
WP_038434534.1|2838093_2838879_+	hypothetical protein	NA	C7BGF1	Burkholderia_phage	54.1	1.4e-63
WP_038434535.1|2839006_2839399_+	hypothetical protein	NA	A0A2H4N7F5	Pectobacterium_phage	81.8	4.0e-19
WP_032412086.1|2839395_2839602_+	hypothetical protein	NA	R9TRD3	Aeromonas_phage	97.1	1.4e-31
WP_038434536.1|2839598_2840210_+	hypothetical protein	NA	A0A075B8K3	Enterobacteria_phage	34.3	2.4e-18
WP_038434537.1|2840382_2840751_+	hypothetical protein	NA	A0A088CE95	Shigella_phage	54.2	1.2e-17
WP_023284952.1|2840743_2840962_+	hypothetical protein	NA	G8C7S3	Escherichia_phage	53.4	2.7e-09
WP_000089156.1|2841262_2841499_+	excisionase	NA	NA	NA	NA	NA
WP_000741346.1|2841488_2842631_+|integrase	tyrosine-type recombinase/integrase	integrase	Q77Z02	Phage_21	82.2	9.1e-173
WP_004150800.1|2842743_2843994_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
2844334:2844348	attR	AAAGAACGCCAGCCA	NA	NA	NA	NA
>prophage 4
NZ_CP009461	Klebsiella pneumoniae strain XH209 chromosome, complete genome	5118878	3083409	3092883	5118878	tRNA,protease	Brazilian_cedratvirus(16.67%)	8	NA	NA
WP_023302125.1|3083409_3085131_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
WP_072145323.1|3085157_3085877_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_001040187.1|3086230_3086449_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002896522.1|3086579_3088859_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
WP_002896520.1|3088889_3089207_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
WP_002896516.1|3089532_3089754_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
WP_004150848.1|3089830_3091771_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
WP_002896440.1|3091767_3092883_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
