assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000782855.1_ASM78285v1	NZ_CP006910	Streptococcus agalactiae CNCTC 10/84 chromosome, complete genome	1	379940-380186	1	CRISPRCasFinder	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	AAAGCAAAAATTGATGCTGAAAATAAAG	28	0	0	NA	NA	NA	3	3	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|230aa|up_4|NZ_CP006910.1_374768_375458_+,NA|100aa|up_2|NZ_CP006910.1_376171_376471_+,NA|76aa|down_0|NZ_CP006910.1_382663_382891_+,NA|194aa|down_1|NZ_CP006910.1_382995_383577_+,NA|251aa|down_2|NZ_CP006910.1_383627_384380_+,NA|99aa|down_3|NZ_CP006910.1_384416_384713_+,NA|153aa|down_4|NZ_CP006910.1_384705_385164_+,NA|120aa|down_5|NZ_CP006910.1_385225_385585_+,NA|198aa|down_7|NZ_CP006910.1_387918_388512_+,NA|109aa|down_8|NZ_CP006910.1_388535_388862_+	NA|248aa|up_9|NZ_CP006910.1_368478_369222_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|345aa|up_8|NZ_CP006910.1_369205_370240_+	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|267aa|up_7|NZ_CP006910.1_370297_371098_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|212aa|up_6|NZ_CP006910.1_371087_371723_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|345aa|up_5|NZ_CP006910.1_373740_374775_+	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|230aa|up_4|NZ_CP006910.1_374768_375458_+	NA	NA|66aa|up_3|NZ_CP006910.1_375591_375789_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|100aa|up_2|NZ_CP006910.1_376171_376471_+	NA	NA|755aa|up_1|NZ_CP006910.1_376487_378752_+	cd02549, Peptidase_C39A, A sub-family of peptidase family C39	NA|241aa|up_0|NZ_CP006910.1_378771_379494_+	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|76aa|down_0|NZ_CP006910.1_382663_382891_+	NA	NA|194aa|down_1|NZ_CP006910.1_382995_383577_+	NA	NA|251aa|down_2|NZ_CP006910.1_383627_384380_+	NA	NA|99aa|down_3|NZ_CP006910.1_384416_384713_+	NA	NA|153aa|down_4|NZ_CP006910.1_384705_385164_+	NA	NA|120aa|down_5|NZ_CP006910.1_385225_385585_+	NA	NA|787aa|down_6|NZ_CP006910.1_385565_387926_+	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|198aa|down_7|NZ_CP006910.1_387918_388512_+	NA	NA|109aa|down_8|NZ_CP006910.1_388535_388862_+	NA	NA|897aa|down_9|NZ_CP006910.1_388896_391587_+	pfam18013, Phage_lysozyme2, Phage tail lysozyme
GCF_000782855.1_ASM78285v1	NZ_CP006910	Streptococcus agalactiae CNCTC 10/84 chromosome, complete genome	2	913073-913966	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	12,13,6	13	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA	NA|124aa|up_9|NZ_CP006910.1_902439_902811_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP006910.1_902835_903216_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP006910.1_903309_904440_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP006910.1_904443_905181_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP006910.1_905181_905952_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP006910.1_905941_906598_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1375aa|up_3|NZ_CP006910.1_906986_911111_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|290aa|up_2|NZ_CP006910.1_911112_911982_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP006910.1_911978_912320_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP006910.1_912306_912972_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|139aa|down_0|NZ_CP006910.1_914521_914938_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_CP006910.1_915073_916906_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_2|NZ_CP006910.1_917151_919785_+	NF033189, internalin_A, class 1 internalin InlA	NA|220aa|down_3|NZ_CP006910.1_919884_920544_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_4|NZ_CP006910.1_920552_921017_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|145aa|down_5|NZ_CP006910.1_921016_921451_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_6|NZ_CP006910.1_921602_924395_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_7|NZ_CP006910.1_924394_925498_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|194aa|down_8|NZ_CP006910.1_925616_926198_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|204aa|down_9|NZ_CP006910.1_926871_927483_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]
GCF_000782855.1_ASM78285v1	NZ_CP006910	Streptococcus agalactiae CNCTC 10/84 chromosome, complete genome	3	1411794-1412998	2	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	GCACTNNTTGANGCGCTNGTNCTNGCTGANGTNGANGCACT	41	0	0	NA	NA	NA	16	16	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA|117aa|down_5|NZ_CP006910.1_1423141_1423492_+	NA|331aa|up_9|NZ_CP006910.1_1399089_1400082_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|520aa|up_8|NZ_CP006910.1_1400078_1401638_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|515aa|up_7|NZ_CP006910.1_1401644_1403189_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|410aa|up_6|NZ_CP006910.1_1403188_1404418_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|396aa|up_5|NZ_CP006910.1_1404550_1405738_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|292aa|up_4|NZ_CP006910.1_1405798_1406674_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|395aa|up_3|NZ_CP006910.1_1406666_1407851_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|414aa|up_2|NZ_CP006910.1_1407840_1409082_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP006910.1_1409078_1410284_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|336aa|up_0|NZ_CP006910.1_1410292_1411300_-	PRK09814, PRK09814, sugar transferase	NA|499aa|down_0|NZ_CP006910.1_1415321_1416818_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|664aa|down_1|NZ_CP006910.1_1416914_1418906_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|307aa|down_2|NZ_CP006910.1_1418966_1419887_-	pfam02517, Abi, CAAX protease self-immunity	NA|728aa|down_3|NZ_CP006910.1_1420069_1422253_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|down_4|NZ_CP006910.1_1422252_1422993_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|117aa|down_5|NZ_CP006910.1_1423141_1423492_+	NA	NA|438aa|down_6|NZ_CP006910.1_1423767_1425081_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|down_7|NZ_CP006910.1_1425141_1425270_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|414aa|down_8|NZ_CP006910.1_1425447_1426689_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|193aa|down_9|NZ_CP006910.1_1426722_1427301_-	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)
GCF_000782855.1_ASM78285v1	NZ_CP006910	Streptococcus agalactiae CNCTC 10/84 chromosome, complete genome	4	1897796-1898101	3	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	TTTNNCTTCTGGNTTAGCCTCTGGTTTGGC	30	2	2	1897826-1897843|1897946-1897963	NZ_CP006910.1_1898102-1898119|NZ_CP006910.1_1898102-1898119	NA	5	5	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|65aa|up_7|NZ_CP006910.1_1888433_1888628_+,NA|203aa|up_4|NZ_CP006910.1_1891024_1891633_+,NA	NA|231aa|up_9|NZ_CP006910.1_1882897_1883590_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|1498aa|up_8|NZ_CP006910.1_1883912_1888406_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|65aa|up_7|NZ_CP006910.1_1888433_1888628_+	NA	NA|229aa|up_6|NZ_CP006910.1_1888860_1889547_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_5|NZ_CP006910.1_1889543_1890932_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP006910.1_1891024_1891633_+	NA	NA|834aa|up_3|NZ_CP006910.1_1891722_1894224_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_2|NZ_CP006910.1_1894600_1895848_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|282aa|up_1|NZ_CP006910.1_1895890_1896736_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|180aa|up_0|NZ_CP006910.1_1896873_1897413_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|58aa|down_0|NZ_CP006910.1_1899316_1899490_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP006910.1_1899525_1899678_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|295aa|down_2|NZ_CP006910.1_1902090_1902975_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|404aa|down_3|NZ_CP006910.1_1904808_1906020_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_4|NZ_CP006910.1_1906086_1906758_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_5|NZ_CP006910.1_1906787_1907990_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_6|NZ_CP006910.1_1908010_1908790_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_7|NZ_CP006910.1_1908948_1909686_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|122aa|down_8|NZ_CP006910.1_1909698_1910064_+	PRK00068, PRK00068, hypothetical protein; Validated	NA|541aa|down_9|NZ_CP006910.1_1910095_1911718_-	PRK00013, groEL, chaperonin GroEL; Reviewed
