assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	1	331911-332709	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_HG813240.1_331426_331609_-,NA	NA|398aa|up_9|NZ_HG813240.1_321604_322798_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_HG813240.1_322833_324516_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_HG813240.1_324532_326728_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_HG813240.1_326841_327975_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_HG813240.1_327971_328592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_HG813240.1_328688_329270_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_HG813240.1_329199_329925_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_HG813240.1_330014_330935_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_HG813240.1_330974_331403_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_HG813240.1_331426_331609_-	NA	NA|906aa|down_0|NZ_HG813240.1_334774_337492_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_HG813240.1_337782_339393_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_HG813240.1_339416_340325_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_HG813240.1_340548_342444_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_HG813240.1_342440_344057_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_HG813240.1_344053_348046_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_HG813240.1_348042_348351_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_HG813240.1_348353_349895_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_HG813240.1_349943_350237_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_HG813240.1_350266_350557_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	2	333094-333204	1	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATC	24	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_HG813240.1_331426_331609_-,NA	NA|398aa|up_9|NZ_HG813240.1_321604_322798_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_HG813240.1_322833_324516_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_HG813240.1_324532_326728_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_HG813240.1_326841_327975_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_HG813240.1_327971_328592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_HG813240.1_328688_329270_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_HG813240.1_329199_329925_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_HG813240.1_330014_330935_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_HG813240.1_330974_331403_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_HG813240.1_331426_331609_-	NA	NA|906aa|down_0|NZ_HG813240.1_334774_337492_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_HG813240.1_337782_339393_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_HG813240.1_339416_340325_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_HG813240.1_340548_342444_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_HG813240.1_342440_344057_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_HG813240.1_344053_348046_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_HG813240.1_348042_348351_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_HG813240.1_348353_349895_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_HG813240.1_349943_350237_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_HG813240.1_350266_350557_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	3	364882-365580	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	365170-365211|365245-365277	NZ_HG813240.1_373186-373227|NZ_HG813240.1_372001-372033	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_HG813240.1_361894_362197_+,NA|161aa|down_1|NZ_HG813240.1_374975_375458_-,NA|410aa|down_5|NZ_HG813240.1_377574_378804_+	NA|262aa|up_9|NZ_HG813240.1_356589_357375_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_HG813240.1_357363_358167_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_HG813240.1_358176_359574_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_HG813240.1_359752_361528_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_HG813240.1_361670_361898_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_HG813240.1_361894_362197_+	NA	NA|74aa|up_3|NZ_HG813240.1_362244_362466_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_HG813240.1_362462_362888_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_HG813240.1_363023_363656_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_HG813240.1_363652_364561_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_HG813240.1_374316_374988_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_HG813240.1_374975_375458_-	NA	NA|239aa|down_2|NZ_HG813240.1_375515_376232_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_HG813240.1_376333_376990_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_HG813240.1_377059_377551_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_HG813240.1_377574_378804_+	NA	NA|621aa|down_6|NZ_HG813240.1_378958_380821_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_HG813240.1_380892_381279_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_HG813240.1_381281_381917_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_HG813240.1_382004_382889_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	4	629686-629823	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	629704-629721|629704-629721|629788-629805	NZ_HG813240.1_23824-23841|NZ_HG813240.1_1411944-1411961|NZ_HG813240.1_971684-971701	NA	3	3	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_HG813240.1_620440_620602_-,NA|478aa|up_0|NZ_HG813240.1_626701_628135_-,NA|450aa|down_2|NZ_HG813240.1_631458_632808_-,NA|93aa|down_5|NZ_HG813240.1_634338_634617_-	NA|325aa|up_9|NZ_HG813240.1_618210_619185_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_HG813240.1_619226_620444_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_HG813240.1_620440_620602_-	NA	NA|106aa|up_6|NZ_HG813240.1_620648_620966_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NZ_HG813240.1_621112_622981_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_HG813240.1_622876_623884_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_HG813240.1_623965_624844_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_HG813240.1_624860_625655_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_HG813240.1_625651_626692_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_HG813240.1_626701_628135_-	NA	NA|211aa|down_0|NZ_HG813240.1_630146_630779_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_HG813240.1_630775_631438_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_HG813240.1_631458_632808_-	NA	NA|381aa|down_3|NZ_HG813240.1_632819_633962_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_HG813240.1_633976_634279_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_HG813240.1_634338_634617_-	NA	NA|418aa|down_6|NZ_HG813240.1_634613_635867_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_HG813240.1_635986_636373_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_HG813240.1_636435_637320_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_HG813240.1_637415_638318_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	5	690424-690500	2	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_HG813240.1_676319_676727_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_HG813240.1_676786_677473_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_HG813240.1_677626_680260_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_HG813240.1_680282_682670_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_HG813240.1_682807_683530_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_HG813240.1_683526_684324_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_HG813240.1_684325_685213_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_HG813240.1_685218_686433_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_HG813240.1_686429_687461_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_HG813240.1_687457_688903_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_HG813240.1_691635_693186_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_HG813240.1_693237_693630_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_HG813240.1_693626_693884_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_HG813240.1_694066_695302_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_HG813240.1_695552_695966_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_HG813240.1_695962_696199_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_HG813240.1_696302_696809_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_HG813240.1_696922_697393_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_HG813240.1_697436_698198_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_HG813240.1_698254_698566_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	6	1573648-1574720	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1573848-1573869	NZ_HG813240.1_1210687-1210666	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_7|NZ_HG813240.1_1565156_1565729_+,NA	NA|103aa|up_9|NZ_HG813240.1_1562926_1563235_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_HG813240.1_1563231_1564851_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NZ_HG813240.1_1565156_1565729_+	NA	NA|209aa|up_6|NZ_HG813240.1_1565863_1566490_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_HG813240.1_1566555_1566888_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_HG813240.1_1566903_1568160_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_HG813240.1_1568287_1569499_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_HG813240.1_1569571_1571050_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_HG813240.1_1571046_1572432_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_HG813240.1_1572509_1573544_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_HG813240.1_1575574_1575976_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_HG813240.1_1575972_1576230_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_HG813240.1_1576312_1577272_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_HG813240.1_1577296_1578259_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_HG813240.1_1578392_1578995_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_HG813240.1_1579075_1581043_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_HG813240.1_1581060_1581885_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_HG813240.1_1582053_1582536_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_HG813240.1_1582607_1583432_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_HG813240.1_1583628_1584567_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	7	1858824-1858999	2	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCGTACAA	18	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|269aa|up_2|NZ_HG813240.1_1851749_1852556_+,NA	NA|202aa|up_9|NZ_HG813240.1_1846291_1846897_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|up_8|NZ_HG813240.1_1846946_1847141_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|130aa|up_7|NZ_HG813240.1_1847202_1847592_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|261aa|up_6|NZ_HG813240.1_1847624_1848407_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|352aa|up_5|NZ_HG813240.1_1848417_1849473_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|up_4|NZ_HG813240.1_1849782_1850715_+	pfam00934, PE, PE family	NA|317aa|up_3|NZ_HG813240.1_1850792_1851743_+	cd07302, CHD, cyclase homology domain	NA|269aa|up_2|NZ_HG813240.1_1851749_1852556_+	NA	NA|342aa|up_1|NZ_HG813240.1_1852751_1853777_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|832aa|up_0|NZ_HG813240.1_1853776_1856272_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_0|NZ_HG813240.1_1859615_1860674_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|405aa|down_1|NZ_HG813240.1_1860670_1861885_+	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|295aa|down_2|NZ_HG813240.1_1861881_1862766_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|401aa|down_3|NZ_HG813240.1_1862762_1863965_+	PRK03244, argD, acetylornithine transaminase	NA|308aa|down_4|NZ_HG813240.1_1863961_1864885_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|171aa|down_5|NZ_HG813240.1_1864881_1865394_+	PRK03341, PRK03341, arginine repressor; Provisional	NA|399aa|down_6|NZ_HG813240.1_1865402_1866599_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|471aa|down_7|NZ_HG813240.1_1866678_1868091_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|354aa|down_8|NZ_HG813240.1_1868199_1869261_+	COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|2127aa|down_9|NZ_HG813240.1_1869343_1875724_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	8	2072044-2072298	3	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2072125-2072142|2072125-2072142|2072215-2072232	NZ_HG813240.1_399482-399465|NZ_HG813240.1_605758-605741|NZ_HG813240.1_3439422-3439405	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_HG813240.1_2071403_2071667_-,NA	NA|165aa|up_9|NZ_HG813240.1_2057753_2058248_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_HG813240.1_2058595_2059273_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_HG813240.1_2059631_2062457_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_HG813240.1_2062683_2063544_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_HG813240.1_2063584_2064451_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_HG813240.1_2064455_2066342_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_HG813240.1_2066357_2068391_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_HG813240.1_2068510_2070736_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_HG813240.1_2071011_2071407_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_HG813240.1_2071403_2071667_-	NA	NA|346aa|down_0|NZ_HG813240.1_2073435_2074473_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_HG813240.1_2074472_2075840_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_HG813240.1_2076013_2077453_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_HG813240.1_2077485_2078937_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_HG813240.1_2078966_2079917_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_HG813240.1_2079931_2080348_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_HG813240.1_2080625_2081048_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_HG813240.1_2081096_2081399_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_HG813240.1_2081395_2081710_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_HG813240.1_2081709_2083443_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	9	2152147-2152257	4	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	AACAGTAATAGGCGGAACATTGATCGGCCCCACCAACGC	39	1	7	2152186-2152218|2152186-2152218|2152186-2152218|2152186-2152218|2152186-2152218|2152186-2152218|2152186-2152218	NZ_HG813240.1_2150390-2150422|NZ_HG813240.1_2150462-2150494|NZ_HG813240.1_2150534-2150566|NZ_HG813240.1_2150606-2150638|NZ_HG813240.1_2150678-2150710|NZ_HG813240.1_2150750-2150782|NZ_HG813240.1_2150318-2150350	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_HG813240.1_2143726_2144134_-,NA|127aa|down_6|NZ_HG813240.1_2162854_2163235_-	NA|155aa|up_9|NZ_HG813240.1_2137054_2137519_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_HG813240.1_2137694_2139917_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_HG813240.1_2139954_2140398_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_HG813240.1_2140511_2141105_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_HG813240.1_2141187_2141793_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_HG813240.1_2141892_2142897_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_HG813240.1_2142996_2143749_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_HG813240.1_2143726_2144134_-	NA	NA|767aa|up_1|NZ_HG813240.1_2144268_2146569_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_HG813240.1_2150833_2152095_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|988aa|down_0|NZ_HG813240.1_2153953_2156917_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_HG813240.1_2157365_2157830_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_HG813240.1_2157927_2158791_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_HG813240.1_2158828_2160100_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_HG813240.1_2160371_2161487_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_HG813240.1_2161477_2162818_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_HG813240.1_2162854_2163235_-	NA	NA|621aa|down_7|NZ_HG813240.1_2163391_2165254_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_HG813240.1_2165261_2165741_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_HG813240.1_2165977_2166751_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	10	2155119-2155338	5	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_HG813240.1_2143726_2144134_-,NA|127aa|down_5|NZ_HG813240.1_2162854_2163235_-	NA|155aa|up_9|NZ_HG813240.1_2137054_2137519_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_HG813240.1_2137694_2139917_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_HG813240.1_2139954_2140398_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_HG813240.1_2140511_2141105_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_HG813240.1_2141187_2141793_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_HG813240.1_2141892_2142897_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_HG813240.1_2142996_2143749_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_HG813240.1_2143726_2144134_-	NA	NA|767aa|up_1|NZ_HG813240.1_2144268_2146569_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_HG813240.1_2150833_2152095_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_HG813240.1_2157365_2157830_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_HG813240.1_2157927_2158791_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_HG813240.1_2158828_2160100_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_HG813240.1_2160371_2161487_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_HG813240.1_2161477_2162818_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_HG813240.1_2162854_2163235_-	NA	NA|621aa|down_6|NZ_HG813240.1_2163391_2165254_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_HG813240.1_2165261_2165741_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_HG813240.1_2165977_2166751_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_HG813240.1_2166754_2167522_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	11	3113432-3114579	3,6,4,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	11,14,15,11	15	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_HG813240.1_3106711_3106966_-,NA|135aa|up_7|NZ_HG813240.1_3107113_3107518_+,NA|64aa|up_6|NZ_HG813240.1_3107514_3107706_+,NA|86aa|up_4|NZ_HG813240.1_3109292_3109550_+,NA|104aa|up_3|NZ_HG813240.1_3109654_3109966_+,NA|203aa|up_2|NZ_HG813240.1_3110385_3110994_+,NA	NA|92aa|up_9|NZ_HG813240.1_3106260_3106536_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_HG813240.1_3106711_3106966_-	NA	NA|135aa|up_7|NZ_HG813240.1_3107113_3107518_+	NA	NA|64aa|up_6|NZ_HG813240.1_3107514_3107706_+	NA	NA|385aa|up_5|NZ_HG813240.1_3107904_3109059_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_HG813240.1_3109292_3109550_+	NA	NA|104aa|up_3|NZ_HG813240.1_3109654_3109966_+	NA	NA|203aa|up_2|NZ_HG813240.1_3110385_3110994_+	NA	NA|470aa|up_1|NZ_HG813240.1_3111064_3112474_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_HG813240.1_3112470_3113283_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_HG813240.1_3114610_3115872_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_HG813240.1_3116235_3116946_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_HG813240.1_3116955_3117330_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_HG813240.1_3117326_3119765_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_4|NZ_HG813240.1_3119761_3120484_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_HG813240.1_3120883_3121429_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_HG813240.1_3121700_3122585_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_HG813240.1_3122587_3123475_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_HG813240.1_3123779_3124325_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_HG813240.1_3124321_3124591_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	12	3655444-3655562	7	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3655474-3655532	NZ_HG813240.1_3655537-3655595	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|138aa|down_6|NZ_HG813240.1_3661195_3661609_-,NA|126aa|down_7|NZ_HG813240.1_3661643_3662021_-	NA|719aa|up_9|NZ_HG813240.1_3642270_3644427_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_HG813240.1_3644423_3645092_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_HG813240.1_3645192_3646377_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|765aa|up_6|NZ_HG813240.1_3646381_3648676_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_HG813240.1_3648664_3649834_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_HG813240.1_3649858_3650383_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_HG813240.1_3650379_3651669_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|273aa|up_2|NZ_HG813240.1_3651622_3652441_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_HG813240.1_3652395_3652914_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_HG813240.1_3652956_3653757_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_HG813240.1_3655828_3656497_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_HG813240.1_3656537_3657431_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_HG813240.1_3657427_3657859_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_HG813240.1_3657966_3659769_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_HG813240.1_3659778_3660564_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_HG813240.1_3660560_3660998_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|138aa|down_6|NZ_HG813240.1_3661195_3661609_-	NA	NA|126aa|down_7|NZ_HG813240.1_3661643_3662021_-	NA	NA|450aa|down_8|NZ_HG813240.1_3662054_3663404_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_HG813240.1_3663454_3663907_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	13	3737921-3738497	5	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_HG813240.1_3752729_3753017_-,NA|87aa|down_8|NZ_HG813240.1_3766136_3766397_-	NA|147aa|up_9|NZ_HG813240.1_3716724_3717165_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_HG813240.1_3717198_3718068_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_HG813240.1_3718088_3719099_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_6|NZ_HG813240.1_3719371_3720016_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_HG813240.1_3720082_3721312_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_HG813240.1_3721594_3722944_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_HG813240.1_3722955_3724095_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_HG813240.1_3724091_3724823_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3114aa|up_1|NZ_HG813240.1_3724831_3734173_-	pfam00823, PPE, PPE family	NA|330aa|up_0|NZ_HG813240.1_3734221_3735211_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_HG813240.1_3740599_3740857_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_HG813240.1_3741112_3750586_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_HG813240.1_3751211_3751658_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_HG813240.1_3751694_3752435_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_HG813240.1_3752729_3753017_-	NA	NA|265aa|down_5|NZ_HG813240.1_3764746_3765541_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NZ_HG813240.1_3765622_3765994_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_7|NZ_HG813240.1_3765891_3766110_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NZ_HG813240.1_3766136_3766397_-	NA	NA|130aa|down_9|NZ_HG813240.1_3766511_3766901_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	14	3846853-3846942	8	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_7|NZ_HG813240.1_3838889_3839120_+,NA|121aa|up_6|NZ_HG813240.1_3839223_3839586_-,NA|73aa|up_2|NZ_HG813240.1_3844918_3845137_-,NA|121aa|down_0|NZ_HG813240.1_3847927_3848290_-,NA|52aa|down_2|NZ_HG813240.1_3850131_3850287_-,NA|52aa|down_3|NZ_HG813240.1_3850311_3850467_-,NA|238aa|down_6|NZ_HG813240.1_3854502_3855216_-	NA|169aa|up_9|NZ_HG813240.1_3837200_3837707_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_8|NZ_HG813240.1_3837703_3838930_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_7|NZ_HG813240.1_3838889_3839120_+	NA	NA|121aa|up_6|NZ_HG813240.1_3839223_3839586_-	NA	NA|177aa|up_5|NZ_HG813240.1_3840544_3841075_+	pfam00823, PPE, PPE family	NA|252aa|up_4|NZ_HG813240.1_3841392_3842148_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|421aa|up_3|NZ_HG813240.1_3842231_3843493_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|73aa|up_2|NZ_HG813240.1_3844918_3845137_-	NA	NA|100aa|up_1|NZ_HG813240.1_3845631_3845931_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_HG813240.1_3846016_3846559_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_HG813240.1_3847927_3848290_-	NA	NA|179aa|down_1|NZ_HG813240.1_3848452_3848989_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_HG813240.1_3850131_3850287_-	NA	NA|52aa|down_3|NZ_HG813240.1_3850311_3850467_-	NA	NA|461aa|down_4|NZ_HG813240.1_3851659_3853042_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_HG813240.1_3853079_3854501_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_HG813240.1_3854502_3855216_-	NA	NA|285aa|down_7|NZ_HG813240.1_3855226_3856081_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_HG813240.1_3856302_3858177_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_HG813240.1_3858198_3858675_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_000786505.1_MT49-02	NZ_HG813240	Mycobacterium tuberculosis 49-02	15	4111355-4111443	9	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_HG813240.1_4101941_4102712_-,NA|233aa|up_0|NZ_HG813240.1_4110459_4111158_-,NA|126aa|down_6|NZ_HG813240.1_4116678_4117056_+	NA|388aa|up_9|NZ_HG813240.1_4097612_4098776_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_HG813240.1_4098772_4099825_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_HG813240.1_4100323_4101187_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_HG813240.1_4101941_4102712_-	NA	NA|549aa|up_5|NZ_HG813240.1_4102708_4104355_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_HG813240.1_4104351_4105215_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_HG813240.1_4105207_4106134_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_HG813240.1_4106135_4107761_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_HG813240.1_4108468_4110424_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_HG813240.1_4110459_4111158_-	NA	NA|173aa|down_0|NZ_HG813240.1_4111503_4112022_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_HG813240.1_4112022_4113006_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_HG813240.1_4112998_4114192_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_HG813240.1_4114197_4115019_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_HG813240.1_4115150_4115834_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_HG813240.1_4115833_4116571_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_HG813240.1_4116678_4117056_+	NA	NA|225aa|down_7|NZ_HG813240.1_4117154_4117829_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_HG813240.1_4117934_4118729_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_HG813240.1_4118735_4119191_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
