assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	1	433557-433657	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP010298.1_425129_425339_-,NA|128aa|up_7|NZ_CP010298.1_426163_426547_-,NA|98aa|up_5|NZ_CP010298.1_427500_427794_-,NA|34aa|up_0|NZ_CP010298.1_432781_432883_+,NA|221aa|down_1|NZ_CP010298.1_434747_435410_-,NA|179aa|down_7|NZ_CP010298.1_441501_442038_-	NA|70aa|up_9|NZ_CP010298.1_425129_425339_-	NA	NA|194aa|up_8|NZ_CP010298.1_425516_426098_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP010298.1_426163_426547_-	NA	NA|209aa|up_6|NZ_CP010298.1_426801_427428_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP010298.1_427500_427794_-	NA	NA|508aa|up_4|NZ_CP010298.1_427872_429396_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP010298.1_429411_429981_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP010298.1_430472_431228_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP010298.1_431308_432697_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP010298.1_432781_432883_+	NA	NA|319aa|down_0|NZ_CP010298.1_433673_434630_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP010298.1_434747_435410_-	NA	NA|136aa|down_2|NZ_CP010298.1_435552_435960_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP010298.1_436472_437051_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP010298.1_437050_438319_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP010298.1_438356_439823_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP010298.1_439847_441389_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP010298.1_441501_442038_-	NA	NA|235aa|down_8|NZ_CP010298.1_442430_443135_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP010298.1_443533_443806_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	2	672072-672164	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP010298.1_668556_668664_+,NA|169aa|down_4|NZ_CP010298.1_675911_676418_+,NA|239aa|down_5|NZ_CP010298.1_676579_677296_+	NA|313aa|up_9|NZ_CP010298.1_662758_663697_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP010298.1_663907_664444_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP010298.1_664612_665089_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP010298.1_665128_666424_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP010298.1_666451_666973_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP010298.1_667471_668482_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP010298.1_668556_668664_+	NA	NA|128aa|up_2|NZ_CP010298.1_668789_669173_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP010298.1_669169_670831_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP010298.1_671218_671854_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP010298.1_672292_673120_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP010298.1_673267_674218_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP010298.1_674272_674992_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP010298.1_674975_675776_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP010298.1_675911_676418_+	NA	NA|239aa|down_5|NZ_CP010298.1_676579_677296_+	NA	NA|263aa|down_6|NZ_CP010298.1_677464_678253_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP010298.1_678503_678878_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP010298.1_679825_680755_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP010298.1_680949_681174_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	3	834526-834611	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	834556-834581|834556-834581|834556-834581|834556-834581|834556-834581	NZ_CP010298.1_797518-797493|NZ_CP010298.1_2830245-2830270|NZ_CP010298.1_2830301-2830326|NZ_CP010298.1_797574-797549|NZ_CP010298.1_940546-940521	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP010298.1_821778_822618_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP010298.1_822791_823442_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP010298.1_823438_823675_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP010298.1_823943_825929_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP010298.1_825936_828783_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP010298.1_829444_830377_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP010298.1_830382_831222_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP010298.1_831229_831715_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP010298.1_831722_833162_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP010298.1_833228_834164_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP010298.1_835043_835955_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP010298.1_835951_836947_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP010298.1_837056_838001_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP010298.1_838574_839162_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP010298.1_839404_840307_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP010298.1_841008_841638_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP010298.1_842279_843293_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP010298.1_843345_844356_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP010298.1_844494_845685_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP010298.1_845806_846568_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	4	877737-877818	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	877761-877794|877761-877794	NZ_CP010298.1_1366752-1366719|NZ_CP010298.1_1455911-1455944	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP010298.1_876639_876753_+,NA	NA|206aa|up_9|NZ_CP010298.1_871494_872112_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP010298.1_872266_872761_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP010298.1_873159_873582_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP010298.1_873729_874446_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP010298.1_874528_875068_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP010298.1_875217_875538_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP010298.1_875681_876038_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP010298.1_876195_876576_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP010298.1_876639_876753_+	NA	NA|293aa|up_0|NZ_CP010298.1_876754_877633_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP010298.1_878374_878761_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP010298.1_878753_879050_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP010298.1_879299_880325_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP010298.1_880317_881013_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP010298.1_881030_881852_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP010298.1_881994_883215_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP010298.1_883302_884031_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP010298.1_884054_884783_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP010298.1_884799_885258_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP010298.1_885269_885602_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	5	940547-940829	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	940577-940602|940577-940602|940577-940602|940577-940602|940691-940716|940691-940716	NZ_CP010298.1_940521-940546|NZ_CP010298.1_797493-797518|NZ_CP010298.1_2830270-2830245|NZ_CP010298.1_2830326-2830301|NZ_CP010298.1_834637-834612|NZ_CP010298.1_394890-394915	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP010298.1_929436_930933_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP010298.1_930925_931255_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP010298.1_931266_931695_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP010298.1_931687_934093_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP010298.1_934223_934607_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP010298.1_934670_935264_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP010298.1_935679_936057_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP010298.1_936417_937545_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP010298.1_937852_939043_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP010298.1_939151_940396_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP010298.1_940898_941828_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP010298.1_942069_943449_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP010298.1_943438_944644_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP010298.1_944994_946326_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP010298.1_946650_947226_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP010298.1_947230_947755_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP010298.1_947770_948346_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP010298.1_948505_951982_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP010298.1_951982_955636_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP010298.1_955801_956704_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	6	1074219-1074306	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP010298.1_1074095_1074215_+,NA|45aa|down_0|NZ_CP010298.1_1074315_1074450_-,NA|432aa|down_1|NZ_CP010298.1_1074601_1075897_+	NA|730aa|up_9|NZ_CP010298.1_1062673_1064863_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP010298.1_1064841_1066326_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP010298.1_1066318_1067347_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP010298.1_1067349_1067916_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP010298.1_1067930_1069409_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP010298.1_1069430_1070678_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP010298.1_1070942_1071749_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP010298.1_1071741_1073142_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP010298.1_1073156_1073732_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP010298.1_1074095_1074215_+	NA	NA|45aa|down_0|NZ_CP010298.1_1074315_1074450_-	NA	NA|432aa|down_1|NZ_CP010298.1_1074601_1075897_+	NA	NA|391aa|down_2|NZ_CP010298.1_1076321_1077494_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP010298.1_1077547_1078090_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP010298.1_1078243_1078510_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP010298.1_1078512_1080231_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP010298.1_1080467_1080701_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP010298.1_1080898_1082260_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP010298.1_1082256_1083276_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP010298.1_1083408_1084071_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	7	2029503-2029581	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2029526-2029558|2029526-2029558|2029526-2029558|2029526-2029558|2029526-2029558|2029526-2029558	NZ_CP010298.1_834592-834624|NZ_CP010298.1_1158582-1158550|NZ_CP010298.1_1366706-1366674|NZ_CP010298.1_1694547-1694579|NZ_CP010298.1_2664894-2664926|NZ_CP010298.1_1455957-1455989	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP010298.1_2023697_2023973_+,NA|129aa|up_1|NZ_CP010298.1_2027958_2028345_-,NA|138aa|down_1|NZ_CP010298.1_2031382_2031796_-,NA|37aa|down_2|NZ_CP010298.1_2031824_2031935_-,NA|31aa|down_6|NZ_CP010298.1_2034940_2035033_-	NA|419aa|up_9|NZ_CP010298.1_2021620_2022877_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP010298.1_2022879_2023080_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP010298.1_2023226_2023691_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP010298.1_2023697_2023973_+	NA	NA|406aa|up_5|NZ_CP010298.1_2024250_2025468_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP010298.1_2025583_2026213_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP010298.1_2026202_2027246_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP010298.1_2027242_2027944_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP010298.1_2027958_2028345_-	NA	NA|253aa|up_0|NZ_CP010298.1_2028561_2029320_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP010298.1_2029847_2030834_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP010298.1_2031382_2031796_-	NA	NA|37aa|down_2|NZ_CP010298.1_2031824_2031935_-	NA	NA|244aa|down_3|NZ_CP010298.1_2032020_2032752_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP010298.1_2032753_2034067_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP010298.1_2034358_2034859_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP010298.1_2034940_2035033_-	NA	DEDDh|185aa|down_7|NZ_CP010298.1_2035247_2035802_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP010298.1_2035869_2036940_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP010298.1_2037186_2037717_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	8	2264770-2264920	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP010298.1_2259641_2259872_-,NA|364aa|up_0|NZ_CP010298.1_2263660_2264752_+,NA|35aa|down_0|NZ_CP010298.1_2265251_2265356_-,NA|31aa|down_2|NZ_CP010298.1_2267467_2267560_+	NA|237aa|up_9|NZ_CP010298.1_2255251_2255962_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP010298.1_2256082_2256526_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP010298.1_2256725_2257139_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP010298.1_2257596_2258970_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP010298.1_2259641_2259872_-	NA	NA|313aa|up_4|NZ_CP010298.1_2259902_2260841_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP010298.1_2261275_2261941_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP010298.1_2262092_2262413_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP010298.1_2262414_2263395_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP010298.1_2263660_2264752_+	NA	NA|35aa|down_0|NZ_CP010298.1_2265251_2265356_-	NA	NA|379aa|down_1|NZ_CP010298.1_2266042_2267179_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP010298.1_2267467_2267560_+	NA	NA|286aa|down_3|NZ_CP010298.1_2268264_2269122_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP010298.1_2269189_2269972_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP010298.1_2270203_2272009_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP010298.1_2272689_2274228_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP010298.1_2274262_2276395_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP010298.1_2276406_2276841_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP010298.1_2276840_2277947_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000815165.1_ASM81516v1	NZ_CP010298	Staphylococcus aureus strain ATCC BAA1680 chromosome, complete genome	9	2388932-2389125	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2388955-2388987|2388955-2388987|2388955-2388987|2388955-2388987|2388955-2388987|2389011-2389046|2389011-2389046|2389011-2389046|2389011-2389046|2389070-2389102|2389070-2389102|2389070-2389102|2389070-2389102	NZ_CP010298.1_834592-834624|NZ_CP010298.1_1158582-1158550|NZ_CP010298.1_1366706-1366674|NZ_CP010298.1_1455957-1455989|NZ_CP010298.1_2664894-2664926|NZ_CP010298.1_1158529-1158494|NZ_CP010298.1_1872876-1872841|NZ_CP010298.1_1694486-1694521|NZ_CP010298.1_2040388-2040423|NZ_CP010298.1_834592-834624|NZ_CP010298.1_1158582-1158550|NZ_CP010298.1_1366706-1366674|NZ_CP010298.1_2664894-2664926	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP010298.1_2379459_2379624_+,NA|106aa|up_8|NZ_CP010298.1_2379868_2380186_+,NA|84aa|up_5|NZ_CP010298.1_2385310_2385562_+,NA|57aa|up_0|NZ_CP010298.1_2388701_2388872_+,NA	NA|55aa|up_9|NZ_CP010298.1_2379459_2379624_+	NA	NA|106aa|up_8|NZ_CP010298.1_2379868_2380186_+	NA	NA|1056aa|up_7|NZ_CP010298.1_2380372_2383540_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP010298.1_2383656_2384922_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP010298.1_2385310_2385562_+	NA	NA|255aa|up_4|NZ_CP010298.1_2385553_2386318_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP010298.1_2386479_2386920_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP010298.1_2386912_2388124_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP010298.1_2388225_2388576_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP010298.1_2388701_2388872_+	NA	NA|341aa|down_0|NZ_CP010298.1_2389266_2390289_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP010298.1_2390308_2390908_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP010298.1_2390914_2391148_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP010298.1_2391153_2391600_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP010298.1_2391613_2392099_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP010298.1_2392095_2393355_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP010298.1_2393417_2393912_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP010298.1_2393913_2394420_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP010298.1_2394450_2395455_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP010298.1_2395624_2396230_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
