The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	55405	66861	2287774		Synechococcus_phage(33.33%)	7	NA	NA
WP_016398682.1|55405_57559_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.2	4.2e-46
WP_000801623.1|57571_58921_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043304.1|59090_59798_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.0e-41
WP_000361175.1|59999_63725_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.6	4.8e-37
WP_000220628.1|63817_65260_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	2.8e-54
WP_000182575.1|65296_66319_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_016398681.1|66315_66861_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.4	6.3e-23
>prophage 2
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	85504	149653	2287774	bacteriocin,transposase,tRNA,holin	Bacillus_phage(50.0%)	46	NA	NA
WP_016398674.1|85504_86692_+|holin	choline-binding protein CbpI	holin	NA	NA	NA	NA
WP_016399281.1|87136_88870_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_016399466.1|89872_94723_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_000220735.1|95078_95933_+	VOC family protein	NA	NA	NA	NA	NA
WP_016399467.1|96038_96596_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_000614986.1|96812_97577_+	nucleoside phosphorylase	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	69.0	1.0e-58
WP_031241617.1|97816_98149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016398957.1|98366_99746_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_016397574.1|99759_100425_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_031236516.1|100730_101273_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_016398959.1|101339_101750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039703965.1|101865_103950_+	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_000520642.1|104116_104815_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.0	2.0e-37
WP_000769768.1|104811_105864_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_000092756.1|106058_106670_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_000714582.1|107871_108801_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_001075102.1|108814_109738_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_000800407.1|109995_111471_+	DUF3502 domain-containing protein	NA	NA	NA	NA	NA
WP_001030031.1|111742_112729_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_016398964.1|114037_115102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016398965.1|115163_116075_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_000198691.1|116067_116661_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000273864.1|116647_116974_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016398071.1|117112_118279_-	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_016398070.1|118336_119497_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_016398966.1|119535_121386_+	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	30.5	1.3e-27
WP_016398969.1|121875_122103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016398970.1|122152_122785_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_016398971.1|122806_123679_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_016398972.1|123687_124359_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_000836450.1|124600_125188_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.7	1.6e-27
WP_023930539.1|125239_126103_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_025173739.1|126568_128788_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.3	6.7e-39
WP_001096141.1|128780_129248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424451.1|130730_131048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025172680.1|131053_131956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424453.1|132011_132392_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001189279.1|132893_133214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033622704.1|134351_134564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399281.1|137280_139014_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_023931052.1|139270_141529_+|holin	choline-binding protein J	holin	NA	NA	NA	NA
WP_016569510.1|141928_143050_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000220940.1|143655_145569_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_016399367.1|145920_147600_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639572.1|147601_147835_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_079199525.1|148510_149653_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	51.0	2.2e-57
>prophage 3
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	283819	420972	2287774	holin,transposase,integrase,protease,tRNA	Streptococcus_phage(21.43%)	107	274418:274450	429103:429119
274418:274450	attL	ATACTCAATGAAAATCAAAGAGCAAACTAGGAA	NA	NA	NA	NA
WP_016397197.1|283819_284527_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
274418:274450	attL	ATACTCAATGAAAATCAAAGAGCAAACTAGGAA	NA	NA	NA	NA
WP_000240953.1|284620_285598_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_016398946.1|285599_286922_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000380924.1|286902_287457_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	43.8	3.7e-39
WP_016398947.1|287499_288312_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000886027.1|288356_288674_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_001044624.1|289030_289477_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_000075973.1|289496_289889_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_001211068.1|290150_290573_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_023927032.1|291297_293511_+	alpha-xylosidase	NA	NA	NA	NA	NA
WP_016569556.1|293732_294209_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_016569560.1|298778_299408_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_016569561.1|299417_300419_-	sugar kinase	NA	NA	NA	NA	NA
WP_016569562.1|300449_301091_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_000185874.1|301109_301925_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000706826.1|302195_302630_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_016569563.1|302641_303832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000178618.1|303842_304334_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000026611.1|304348_305128_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_000148015.1|305114_305933_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_000381739.1|305932_306226_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_039703970.1|306247_308149_+	alginate lyase family protein	NA	NA	NA	NA	NA
WP_000412459.1|308208_309210_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_039703971.1|309480_310059_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_039703972.1|310071_310413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039703973.1|310423_310666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039703974.1|310676_311219_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_001082471.1|311234_311429_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	5.5e-06
WP_039703975.1|311594_312545_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000840840.1|312556_312874_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_039703976.1|312877_315130_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_039703977.1|315131_316112_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_039703978.1|316451_318557_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.4	3.8e-116
WP_000032550.1|318852_319335_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_016569571.1|319429_320914_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_016569572.1|321065_322676_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_016569573.1|322951_324919_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
322750:322782	attR	TTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
WP_016569574.1|325122_327081_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
322750:322782	attR	TTCCTAGTTTGCTCTTTGATTTTCATTGAGTAT	NA	NA	NA	NA
WP_016397718.1|328432_328804_-	type II toxin-antitoxin system death-on-curing family toxin	NA	D0R0D2	Streptococcus_phage	66.7	1.4e-42
WP_016397719.1|328800_329058_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A1X9I6A0	Streptococcus_phage	74.1	4.0e-28
WP_016569575.1|329276_331256_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_128972723.1|331306_332658_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.0	7.4e-65
WP_023930451.1|333070_335227_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_016569673.1|335223_335820_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	34.5	1.1e-17
WP_031241473.1|335886_336426_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|336495_336825_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_016569675.1|337310_338468_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_023928415.1|338480_339851_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_023930454.1|339926_341351_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.7e-41
WP_023928417.1|341362_342049_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023930112.1|342136_343393_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.6	4.0e-222
WP_016399084.1|343571_344534_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_016399083.1|344552_345551_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
WP_016398384.1|345668_346901_-	MFS transporter	NA	NA	NA	NA	NA
WP_000271788.1|346943_347225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000619583.1|348430_348760_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_039703981.1|348881_349760_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_016399081.1|349741_350695_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_016399080.1|350681_351689_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210623.1|351672_352683_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224640.1|352760_353459_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_023930457.1|353455_354451_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_016569815.1|354464_355097_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001821921.1|355321_355576_+	DNA alkylation repair enzyme	NA	NA	NA	NA	NA
WP_000754502.1|356016_356256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078138385.1|356300_356930_+|protease	serine protease	protease	NA	NA	NA	NA
WP_016397741.1|357228_357621_+|integrase	tyrosine-type recombinase/integrase	integrase	C9E2L6	Enterococcus_phage	38.6	2.4e-16
WP_016569813.1|357781_359065_+	trigger factor	NA	NA	NA	NA	NA
WP_016569812.1|359112_361479_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	27.1	4.0e-58
WP_016397744.1|361606_362221_-	signal peptidase I	NA	NA	NA	NA	NA
WP_016569811.1|362232_363105_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_000002021.1|363191_363494_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_000622953.1|363490_364039_+	CvpA family protein	NA	NA	NA	NA	NA
WP_016569810.1|364142_366479_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	54.2	1.8e-21
WP_016569809.1|366821_368144_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023928425.1|368361_368910_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_023930462.1|369019_369919_+	TDT family transporter	NA	NA	NA	NA	NA
WP_016399069.1|369943_371218_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	2.0e-91
WP_000079358.1|371431_371803_-	DUF956 family protein	NA	NA	NA	NA	NA
WP_016399068.1|371805_373170_-	aspartate kinase	NA	NA	NA	NA	NA
WP_016399281.1|373456_375190_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_039703982.1|375570_393276_+	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
WP_039703983.1|393272_398615_+	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
WP_152165059.1|400959_401082_+	chlorohydrolase	NA	NA	NA	NA	NA
WP_016399551.1|401141_401927_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_016399281.1|402059_403793_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_000386347.1|404065_404500_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023930157.1|404499_405474_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000257841.1|405533_405758_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_000857431.1|405876_406851_+	enoyl-[acyl-carrier-protein] reductase FabK	NA	NA	NA	NA	NA
WP_016399362.1|406843_407764_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_016569684.1|407797_408529_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.9	3.8e-15
WP_000774063.1|408550_409786_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_001052244.1|409788_410274_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_000565515.1|410270_410693_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_016399361.1|410704_412072_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_016399360.1|412108_412975_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_016399359.1|412971_413739_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_000148137.1|413897_414083_+	biofilm-regulating peptide BriC	NA	NA	NA	NA	NA
WP_101498163.1|414601_414829_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_016399358.1|414877_415300_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_000510591.1|415292_415682_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_000568640.1|415703_416264_-	elongation factor P	NA	NA	NA	NA	NA
WP_023930151.1|416594_417638_-	2,3-butanediol dehydrogenase	NA	NA	NA	NA	NA
WP_016399356.1|417761_419204_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_016569683.1|419203_420670_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000705419.1|420669_420972_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
429103:429119	attR	CAACTTACAAAGAAGAA	NA	NA	NA	NA
>prophage 4
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	437455	498535	2287774	bacteriocin,transposase,tRNA	Bacillus_phage(23.08%)	54	NA	NA
WP_078144183.1|437455_438397_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	32.0	6.2e-26
WP_000280773.1|438651_439497_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_016397097.1|439643_440705_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_016399021.1|441052_443377_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.8	8.7e-114
WP_025172675.1|443659_443878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016397100.1|443973_444222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016399020.1|444214_444499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033622658.1|445109_445289_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_016399017.1|447047_448487_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_016399016.1|448490_449840_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_016399015.1|450028_450877_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403170.1|450891_451440_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_016399014.1|451446_451704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399013.1|451805_453488_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	4.5e-19
WP_001148101.1|453472_454303_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_016399012.1|454495_454999_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|455435_455999_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001821934.1|456012_456639_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867353.1|456666_457056_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_000333653.1|457060_457510_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|457637_458225_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_016399011.1|458614_460222_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	2.0e-141
WP_016399009.1|467664_468861_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119917.1|468996_469524_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|469600_469957_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001122886.1|469993_471340_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_078140845.1|471435_471555_-	glutamine synthetase	NA	NA	NA	NA	NA
WP_000410533.1|471519_471669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078148735.1|472099_473419_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000651181.1|473475_474273_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.7e-21
WP_016399529.1|474283_474892_+	type I restriction-modification system S protein	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.0e-13
WP_039703985.1|474839_476387_-	restriction endonuclease subunit S	NA	B3GAM1	uncultured_virus	29.0	1.5e-05
WP_016399215.1|476386_477850_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_016399214.1|477862_480196_-	DEAD/DEAH box helicase family protein	NA	Q5YA94	Bacillus_phage	27.9	7.6e-25
WP_016397117.1|480803_481313_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_016397118.1|481476_482511_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|482537_483062_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_016399213.1|483541_485365_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.0	1.9e-132
WP_016397120.1|485375_485780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066295.1|486123_487260_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_025173743.1|487585_487825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016569539.1|487985_488273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|488282_488693_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_016569538.1|488760_489492_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	6.9e-25
WP_016397122.1|489488_490538_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_016397123.1|490598_490928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016397124.1|491182_491521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_016397125.1|492277_493618_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_016397126.1|493659_493815_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_023931279.1|493871_495233_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_016569536.1|495243_497397_-	peptide cleavage/export ABC transporter BlpA	NA	W8CYL7	Bacillus_phage	28.1	1.8e-41
WP_016569535.1|497677_497932_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_031236188.1|497947_498142_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_016569752.1|498385_498535_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	852311	858090	2287774		Streptococcus_phage(50.0%)	9	NA	NA
WP_000405832.1|852311_852806_+	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
WP_016398798.1|852805_853336_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000889095.1|853329_853686_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	2.0e-33
WP_016398797.1|853843_854644_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000590970.1|854643_855387_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_000926599.1|855464_855689_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000272304.1|855754_856666_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_016398796.1|856704_857433_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_001272941.1|857478_858090_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
>prophage 6
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	953299	982716	2287774	protease,integrase,transposase	Streptococcus_phage(96.0%)	32	950042:950056	991572:991586
950042:950056	attL	CGACTCTCTTTTCTT	NA	NA	NA	NA
WP_016398739.1|953299_954658_+	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	56.7	6.0e-131
WP_016398738.1|954641_955091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016398737.1|955083_955464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000840776.1|955476_955710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016398736.1|955712_956300_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000420682.1|956676_956991_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|957006_957393_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_016398735.1|957421_958804_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	99.8	7.9e-264
WP_115260303.1|958980_960429_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	1.5e-233
WP_001814874.1|960449_960533_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_039703997.1|960657_961443_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	97.6	1.6e-131
WP_000627290.1|961780_962323_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|962415_963210_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_002368882.1|965828_966098_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	81.5	7.6e-22
WP_001814874.1|966118_966202_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001038795.1|966326_967064_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
WP_000019067.1|967320_968568_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	3.9e-12
WP_001009056.1|968747_968969_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|969085_969583_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|969557_970064_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|970047_972495_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000804748.1|972497_974675_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_024477612.1|974671_975673_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	99.7	1.4e-190
WP_001224320.1|975669_976605_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_001814923.1|976848_976965_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691734.1|976980_978900_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	96.9	0.0e+00
WP_000336323.1|979018_979186_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|979245_979599_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|980103_980526_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|980522_980753_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|981213_981417_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|981498_982716_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
991572:991586	attR	AAGAAAAGAGAGTCG	NA	NA	NA	NA
>prophage 7
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	1026024	1063743	2287774	protease,transposase,holin	Bacillus_phage(14.29%)	34	NA	NA
WP_016399520.1|1026024_1027236_-|holin	choline-binding protein CbpI	holin	NA	NA	NA	NA
WP_001808393.1|1028607_1028892_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000401781.1|1028945_1029881_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_016399517.1|1029984_1030428_+	flavodoxin	NA	NA	NA	NA	NA
WP_000362440.1|1030543_1030810_+	chorismate mutase	NA	NA	NA	NA	NA
WP_016399516.1|1030806_1031181_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_016398167.1|1031174_1031504_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_001068669.1|1031622_1031970_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_016399514.1|1032648_1033503_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000722392.1|1033596_1034817_+	peptidase C14	NA	NA	NA	NA	NA
WP_000868699.1|1034829_1035948_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	NA	NA	NA	NA
WP_128972726.1|1036733_1038085_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.0	8.2e-64
WP_000023521.1|1039845_1040652_-	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001003506.1|1040664_1041969_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.8	2.3e-26
WP_025173746.1|1042052_1042418_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_000402071.1|1042508_1042841_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_016399222.1|1042852_1044424_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001810629.1|1044618_1045902_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	1.4e-60
WP_000802932.1|1046302_1047016_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000219821.1|1047109_1047670_+	LemA family protein	NA	NA	NA	NA	NA
WP_000895734.1|1047671_1048571_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_016397051.1|1048614_1049817_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	38.0	2.4e-06
WP_016397050.1|1049864_1050173_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_052265476.1|1050411_1050672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016399281.1|1050767_1052501_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_000389597.1|1052652_1052970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000773238.1|1053139_1053682_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000244451.1|1053681_1054311_+	endonuclease III	NA	NA	NA	NA	NA
WP_016399281.1|1054459_1056193_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_016399465.1|1056577_1057099_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_001293823.1|1057117_1058041_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.4	5.1e-25
WP_000166701.1|1058090_1059170_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_016399464.1|1059482_1062659_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_001199652.1|1062933_1063743_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
>prophage 8
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	1402619	1415943	2287774		Streptococcus_phage(80.0%)	11	NA	NA
WP_000734158.1|1402619_1403660_-	DNA (cytosine-5-)-methyltransferase	NA	A7XXH6	Thermus_virus	33.6	1.6e-46
WP_016398656.1|1403656_1405057_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_000760486.1|1405059_1406115_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	38.5	2.1e-62
WP_016397145.1|1406332_1407202_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	3.8e-115
WP_000358228.1|1407204_1407522_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_016398655.1|1407561_1408452_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.0	1.2e-71
WP_016398654.1|1408448_1409087_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.2	5.4e-74
WP_016398653.1|1409306_1410104_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	4.0e-58
WP_016398652.1|1410107_1411370_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	8.6e-140
WP_016398651.1|1411379_1412510_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.3	3.2e-114
WP_016399308.1|1414062_1415943_-	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.1	1.2e-09
>prophage 10
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	1578212	1651264	2287774	head,portal,holin,terminase,tail,integrase,protease,tRNA	Streptococcus_phage(82.26%)	86	1586911:1586943	1658296:1658328
WP_000390784.1|1578212_1578962_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000689596.1|1579016_1579376_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_016569429.1|1579377_1580778_-	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	44.6	2.7e-25
WP_000068664.1|1582275_1582515_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_016397693.1|1582546_1583017_-	single-stranded DNA-binding protein	NA	A0A191KBQ2	Streptococcus_virus	69.9	1.1e-55
WP_016397692.1|1583028_1583319_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_161801414.1|1583471_1584818_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.2	6.3e-56
WP_025172706.1|1584833_1585199_-	VOC family protein	NA	NA	NA	NA	NA
WP_016399146.1|1585191_1586379_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000747253.1|1586375_1586864_-	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
1586911:1586943	attL	AATACTCTTCGAAAATCTCTTCAAACCACGTCA	NA	NA	NA	NA
WP_016397690.1|1587184_1587733_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000697768.1|1588099_1588828_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	39.0	2.6e-40
WP_000508269.1|1588906_1589071_-	YczI family protein	NA	NA	NA	NA	NA
WP_000822854.1|1589136_1590732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016399147.1|1590743_1591154_-	peptide deformylase	NA	A0A2I7R224	Vibrio_phage	32.2	3.9e-09
WP_016399149.1|1592073_1594770_-	cation-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.5	1.4e-70
WP_000813916.1|1595073_1596258_+	CDF family manganese efflux transporter MntE	NA	NA	NA	NA	NA
WP_016399150.1|1596400_1598272_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.1	1.5e-55
WP_023927171.1|1598268_1599453_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	31.5	6.8e-38
WP_000027904.1|1599464_1600232_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_016397685.1|1600508_1601357_-	DegV family protein	NA	NA	NA	NA	NA
WP_001050086.1|1601358_1601733_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_016399152.1|1601806_1603159_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_016397683.1|1603182_1603962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016397682.1|1603948_1604806_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_016397681.1|1604941_1605910_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	98.4	3.1e-65
WP_016399153.1|1606162_1607119_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A1S5SDF6	Streptococcus_phage	99.7	3.9e-145
WP_016399154.1|1607122_1607455_-|holin	phage holin	holin	A0A141DZM7	Streptococcus_phage	99.1	2.8e-50
WP_001810279.1|1607458_1607758_-	hypothetical protein	NA	A0A1S5SC89	Streptococcus_phage	100.0	1.4e-45
WP_016399155.1|1607766_1608117_-	hypothetical protein	NA	A0A1S5S8I0	Streptococcus_phage	94.0	1.1e-60
WP_016399156.1|1608119_1608323_-	hypothetical protein	NA	A0A141E081	Streptococcus_phage	97.0	3.3e-25
WP_016399159.1|1611618_1611969_-	hypothetical protein	NA	A0A141DZN1	Streptococcus_phage	90.5	4.7e-56
WP_016397674.1|1615570_1615921_-	hypothetical protein	NA	A0A060QN56	Streptococcus_phage	97.4	1.8e-55
WP_016399160.1|1615959_1616340_-	hypothetical protein	NA	A0A1S5S7V1	Streptococcus_phage	99.2	4.6e-65
WP_016399161.1|1616344_1616758_-|tail	major tail protein	tail	A0A1S5SF61	Streptococcus_phage	98.5	9.5e-72
WP_016397672.1|1616760_1617129_-	hypothetical protein	NA	A0A1S5SBQ7	Streptococcus_phage	99.2	2.6e-65
WP_016399162.1|1617128_1617641_-	HK97 gp10 family phage protein	NA	E8ZE01	Streptococcus_phage	99.4	7.8e-92
WP_001251083.1|1617615_1617918_-	hypothetical protein	NA	A0A1S5S812	Streptococcus_phage	100.0	2.4e-48
WP_000021225.1|1617934_1618246_-|head,tail	phage head-tail adapter protein	head,tail	A0A1S5SF13	Streptococcus_phage	100.0	1.9e-48
WP_016399163.1|1618247_1618436_-	hypothetical protein	NA	E8ZDF0	Streptococcus_phage	98.4	3.2e-27
WP_000863390.1|1618445_1619471_-	sugar-binding protein	NA	A0A1S5SFR9	Streptococcus_phage	99.1	1.8e-188
WP_001288019.1|1619493_1620018_-	DUF4355 domain-containing protein	NA	A0A060QST4	Streptococcus_phage	100.0	2.9e-65
WP_016399164.1|1621791_1623261_-|portal	phage portal protein	portal	A0A141E1Y1	Streptococcus_phage	98.2	9.0e-274
WP_016399165.1|1623272_1624571_-|terminase	PBSX family phage terminase large subunit	terminase	A0A060QNT8	Streptococcus_phage	98.6	3.6e-258
WP_033622612.1|1624548_1624989_-|terminase	terminase small subunit	terminase	A0A141DZU5	Streptococcus_phage	99.3	2.2e-74
WP_001030245.1|1626220_1626682_-	DUF1492 domain-containing protein	NA	A0A1S5SBH7	Streptococcus_phage	100.0	1.4e-79
WP_000171785.1|1626756_1627071_-	hypothetical protein	NA	A0A060QNX1	Streptococcus_phage	100.0	2.3e-54
WP_001042650.1|1627091_1627271_-	hypothetical protein	NA	A0A1S5S7Z6	Streptococcus_phage	100.0	4.3e-29
WP_023927151.1|1627263_1627680_-	hypothetical protein	NA	A0A1S5SFT9	Streptococcus_phage	91.8	6.8e-70
WP_016399167.1|1627780_1628671_-	DNA cytosine methyltransferase	NA	A0A1S5S9M1	Streptococcus_phage	80.6	2.0e-159
WP_016399168.1|1628906_1629380_-	DUF1642 domain-containing protein	NA	A0A1S5S7M7	Streptococcus_phage	71.9	1.2e-54
WP_016397659.1|1629831_1631169_-	hypothetical protein	NA	A0A1S5SB13	Streptococcus_phage	100.0	1.3e-255
WP_001823578.1|1631171_1631993_-	primase 1 family protein	NA	A0A1S5SB35	Streptococcus_phage	100.0	1.3e-157
WP_000054342.1|1632165_1632672_-	hypothetical protein	NA	X2L082	Streptococcus_phage	100.0	1.6e-92
WP_001044592.1|1633517_1633835_-	hypothetical protein	NA	X2KPG0	Streptococcus_phage	100.0	2.0e-53
WP_016399170.1|1633852_1635046_-	helicase	NA	A0A141E0B2	Streptococcus_phage	99.7	4.0e-232
WP_000696056.1|1635008_1635494_-	hypothetical protein	NA	X2KUD4	Streptococcus_phage	100.0	3.4e-89
WP_016399171.1|1635493_1635853_-	hypothetical protein	NA	A0A1S5SB89	Streptococcus_phage	98.3	2.0e-57
WP_016399172.1|1635852_1636335_-	siphovirus Gp157 family protein	NA	X2KSX3	Streptococcus_phage	98.1	9.3e-79
WP_016397656.1|1636327_1637050_-	HNH endonuclease	NA	A0A1S5SBF9	Streptococcus_phage	97.9	2.8e-135
WP_000252079.1|1637063_1637294_-	hypothetical protein	NA	A0A1S5SDN2	Streptococcus_phage	100.0	6.3e-33
WP_000189400.1|1637294_1637636_-	hypothetical protein	NA	A0A1S5S7X8	Streptococcus_phage	100.0	1.4e-57
WP_000970850.1|1637647_1637839_-	hypothetical protein	NA	A0A1S5SDN5	Streptococcus_phage	100.0	2.3e-28
WP_001050924.1|1637835_1638030_-	hypothetical protein	NA	X2KSX0	Streptococcus_phage	100.0	1.8e-09
WP_016397655.1|1638026_1638299_-	hypothetical protein	NA	A0A1S5SDW9	Streptococcus_phage	98.9	4.3e-41
WP_000134992.1|1638417_1638657_+	hypothetical protein	NA	A0A1S5SD52	Streptococcus_phage	100.0	1.4e-43
WP_000024181.1|1639076_1639244_+	YjzC family protein	NA	NA	NA	NA	NA
WP_016399173.1|1639398_1639602_-	hypothetical protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.7e-29
WP_128969726.1|1639668_1639872_+	hypothetical protein	NA	A0A1S5SDF8	Streptococcus_phage	100.0	3.0e-31
WP_016399176.1|1640360_1640912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016397651.1|1640887_1641067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016397650.1|1641093_1641285_-	hypothetical protein	NA	M1IFE9	Streptococcus_phage	79.4	3.5e-21
WP_016399177.1|1641585_1641954_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SBE7	Streptococcus_phage	82.8	6.7e-53
WP_016399178.1|1641953_1642193_+	hypothetical protein	NA	A0A1S5SBA0	Streptococcus_phage	98.7	2.0e-37
WP_016397646.1|1642468_1642945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023927140.1|1642941_1643109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399179.1|1643119_1643500_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SBG5	Streptococcus_phage	97.6	3.8e-67
WP_016397645.1|1643551_1644148_+	DUF4190 domain-containing protein	NA	O21991	Streptococcus_virus	39.6	7.4e-17
WP_000266846.1|1644297_1645425_+|integrase	site-specific integrase	integrase	A0A1S5SEM0	Streptococcus_phage	99.7	7.7e-209
WP_016399180.1|1645512_1646424_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	2.0e-154
WP_023927138.1|1646420_1647398_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	5.7e-184
WP_023927136.1|1647394_1648285_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1648336_1648717_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1648727_1649315_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1649323_1650556_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_023927129.1|1650757_1651264_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	41.9	1.1e-26
1658296:1658328	attR	TGACGTGGTTTGAAGAGATTTTCGAAGAGTATT	NA	NA	NA	NA
>prophage 11
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	1906511	1913843	2287774		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167849.1|1906511_1907213_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.9	3.2e-35
WP_016398362.1|1907635_1908595_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	5.3e-57
WP_016399267.1|1908584_1909541_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|1909537_1910290_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_016399268.1|1910385_1911351_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_016399269.1|1911575_1911818_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	58.0	8.7e-17
WP_001222228.1|1911817_1912540_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1912526_1913096_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1913114_1913843_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 12
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	2085572	2153663	2287774	protease,transposase,integrase,tRNA	Bacillus_phage(50.0%)	55	2095200:2095257	2105096:2105153
WP_001285241.1|2085572_2086715_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.3	3.8e-86
WP_016399045.1|2086844_2087702_+	DUF975 family protein	NA	NA	NA	NA	NA
WP_023927250.1|2088987_2090130_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	1.1e-16
WP_016399041.1|2090259_2090916_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_016399040.1|2090919_2092200_-	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_016399039.1|2092260_2093745_-	threonine synthase	NA	NA	NA	NA	NA
WP_001277919.1|2093820_2095098_-|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
2095200:2095257	attL	TACTATACCGGCGGCCGGGGTCGAACCGGCACGTCCTTGCGGACACTGGATTTTGAGT	NA	NA	NA	NA
WP_016399038.1|2095359_2095836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016569634.1|2095989_2096271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399036.1|2096332_2096575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399035.1|2096537_2097902_+	cell division protein FtsK	NA	NA	NA	NA	NA
WP_000772805.1|2097999_2098314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001192942.1|2098347_2098737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854384.1|2098903_2099671_+	phosphoesterase	NA	NA	NA	NA	NA
WP_016399034.1|2099856_2100636_+	Rep protein	NA	NA	NA	NA	NA
WP_000562210.1|2100652_2100856_+	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_016399033.1|2100859_2101993_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	35.1	1.3e-33
WP_016399032.1|2102033_2102471_+	HD domain-containing protein	NA	A0A060QNR4	Streptococcus_phage	61.7	3.0e-36
WP_016399031.1|2102686_2102923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399030.1|2102915_2103647_+	serine/threonine protein phosphatase	NA	A0A127AVW0	Bacillus_phage	31.6	1.1e-09
WP_079199530.1|2103705_2104959_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	51.4	4.8e-58
WP_016399281.1|2111562_2113296_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
2105096:2105153	attR	TACTATACCGGCGGCCGGGGTCGAACCGGCACGTCCTTGCGGACACTGGATTTTGAGT	NA	NA	NA	NA
WP_016397028.1|2113487_2113922_-	cytidine deaminase	NA	NA	NA	NA	NA
WP_016397029.1|2113935_2115396_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_016399450.1|2115519_2116869_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_016399449.1|2117038_2117728_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_016399448.1|2117866_2119633_-	multidrug efflux ABC transporter subunit PatB	NA	W8CYL7	Bacillus_phage	25.4	2.0e-38
WP_016399484.1|2120421_2122116_-	multidrug efflux ABC transporter subunit PatA	NA	W8CYL7	Bacillus_phage	28.2	9.0e-44
WP_039704044.1|2122262_2124797_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	21.7	5.2e-35
WP_016399486.1|2124847_2125294_-	arginine repressor	NA	NA	NA	NA	NA
WP_016399140.1|2125429_2127121_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.3	7.1e-81
WP_001809936.1|2128030_2128252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001825294.1|2128238_2128541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000166475.1|2128624_2129332_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
WP_000833273.1|2129332_2130664_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
WP_000669498.1|2130830_2131706_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000595180.1|2131823_2132687_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000049770.1|2132679_2133495_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000536449.1|2133496_2134249_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	6.0e-16
WP_001245778.1|2134263_2134914_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_001061759.1|2134981_2135407_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000415103.1|2136172_2137189_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000202229.1|2137210_2138110_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.3	3.1e-75
WP_000658494.1|2138176_2138854_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_000834319.1|2138837_2139377_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_016399143.1|2139388_2140519_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
WP_000127466.1|2140586_2141285_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
WP_001813336.1|2141514_2142426_-	EamA family transporter	NA	NA	NA	NA	NA
WP_016399144.1|2142490_2144953_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_000546868.1|2145094_2146351_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	8.7e-76
WP_001864651.1|2146428_2148492_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.4	1.3e-52
WP_000910909.1|2148493_2148772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001095515.1|2148923_2149772_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_016399145.1|2150394_2150967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016399281.1|2151929_2153663_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP007593	Streptococcus pneumoniae strain NT_110_58 chromosome, complete genome	2287774	2229494	2286931	2287774	protease,transposase,tRNA,holin	Streptococcus_phage(40.0%)	51	NA	NA
WP_016399370.1|2229494_2230475_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_016399369.1|2230540_2231206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016398718.1|2233159_2233471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023930181.1|2233605_2235882_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_016398721.1|2235964_2236492_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_016397315.1|2236600_2237941_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_016398722.1|2237937_2238591_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_016398723.1|2238845_2241278_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.4	1.6e-126
WP_001211273.1|2241279_2241738_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016398724.1|2241856_2242585_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.1e-27
WP_004261900.1|2242584_2243592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001245129.1|2243630_2244389_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000647661.1|2244351_2244642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000698561.1|2244897_2246244_-|holin	choline binding-anchored murein hydrolase CbpD	holin	NA	NA	NA	NA
WP_001278167.1|2246332_2246599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000852486.1|2246600_2247953_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
WP_000864220.1|2247996_2248449_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000715124.1|2248445_2250419_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_000599107.1|2250554_2251103_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000649968.1|2251182_2251845_-	ComF family protein	NA	NA	NA	NA	NA
WP_000867608.1|2251841_2253140_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	66.4	7.9e-165
WP_000395745.1|2253195_2253831_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	71.0	1.7e-75
WP_000029860.1|2254115_2255036_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	80.7	1.3e-137
WP_000841819.1|2255232_2255631_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000973416.1|2256070_2256394_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_000808063.1|2256639_2257680_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_000268466.1|2257758_2258538_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_000727012.1|2258761_2259940_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_016399281.1|2260202_2261936_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_001249454.1|2262090_2262585_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_016397299.1|2262584_2263403_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_000377893.1|2263461_2264256_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000510412.1|2264248_2265088_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_016398725.1|2265072_2265900_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	9.6e-23
WP_000712132.1|2265896_2266442_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_016398726.1|2266452_2267274_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_016398727.1|2267315_2268599_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	32.3	5.5e-17
WP_016398728.1|2268595_2269846_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	43.3	2.2e-95
WP_000455903.1|2270004_2270373_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_016397296.1|2270375_2271473_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2271523_2273002_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
WP_016398729.1|2273153_2274179_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_039704046.1|2274384_2276007_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.2	4.4e-48
WP_016397294.1|2276068_2278621_+	YfhO family protein	NA	NA	NA	NA	NA
WP_128972720.1|2278803_2280043_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.4	2.3e-65
WP_016399421.1|2281800_2282343_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000866065.1|2282585_2283338_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_016397292.1|2283334_2284660_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000799686.1|2284680_2284806_-	competence-stimulating peptide ComC	NA	NA	NA	NA	NA
WP_016397291.1|2285087_2285567_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_016397290.1|2285749_2286931_+|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.1	1.9e-16
