assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000818115.1_ASM81811v1	NZ_CP009559	Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50503 chromosome, complete genome	1	2212109-2212209	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|448aa|up_9|NZ_CP009559.1_2198187_2199531_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP009559.1_2200158_2200611_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP009559.1_2200638_2202141_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP009559.1_2202165_2204844_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP009559.1_2205064_2205466_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP009559.1_2205465_2206410_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP009559.1_2206560_2206830_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP009559.1_2207071_2209207_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP009559.1_2209316_2210201_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP009559.1_2210306_2210387_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP009559.1_2212422_2213667_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|299aa|down_1|NZ_CP009559.1_2214941_2215838_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_2|NZ_CP009559.1_2215828_2216824_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_3|NZ_CP009559.1_2217040_2217565_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_4|NZ_CP009559.1_2217558_2218062_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_5|NZ_CP009559.1_2218048_2218366_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_6|NZ_CP009559.1_2218403_2218847_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_7|NZ_CP009559.1_2218826_2219345_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_8|NZ_CP009559.1_2219475_2220111_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|192aa|down_9|NZ_CP009559.1_2220177_2220753_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP
GCF_000818115.1_ASM81811v1	NZ_CP009559	Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50503 chromosome, complete genome	2	2561698-2561909	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,c2c9_V-U4,DEDDh,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	cas3,c2c9_V-U4,DEDDh,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP009559.1_2550243_2550780_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP009559.1_2550776_2551247_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP009559.1_2551261_2551768_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP009559.1_2551787_2552561_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP009559.1_2552573_2555273_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP009559.1_2555352_2555940_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP009559.1_2556547_2557348_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP009559.1_2557575_2559213_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP009559.1_2559295_2560594_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP009559.1_2560729_2561401_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|NZ_CP009559.1_2562890_2563253_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|NZ_CP009559.1_2563688_2565488_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|NZ_CP009559.1_2565487_2567200_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_3|NZ_CP009559.1_2567275_2568010_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_4|NZ_CP009559.1_2568097_2569051_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_5|NZ_CP009559.1_2569430_2572130_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|201aa|down_6|NZ_CP009559.1_2574039_2574642_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_7|NZ_CP009559.1_2574664_2575723_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_8|NZ_CP009559.1_2575732_2576458_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|down_9|NZ_CP009559.1_2576457_2577162_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e
GCF_000818115.1_ASM81811v1	NZ_CP009559	Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC 50503 chromosome, complete genome	3	2578460-2578915	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,c2c9_V-U4,DEDDh,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	cas3,c2c9_V-U4,DEDDh,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|571aa|up_9|NZ_CP009559.1_2565487_2567200_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP009559.1_2567275_2568010_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_CP009559.1_2568097_2569051_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_6|NZ_CP009559.1_2569430_2572130_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|201aa|up_5|NZ_CP009559.1_2574039_2574642_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP009559.1_2574664_2575723_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP009559.1_2575732_2576458_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP009559.1_2576457_2577162_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|297aa|up_1|NZ_CP009559.1_2577161_2578052_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP009559.1_2578081_2578375_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|303aa|down_0|NZ_CP009559.1_2580226_2581135_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_1|NZ_CP009559.1_2581144_2582584_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_2|NZ_CP009559.1_2582570_2583176_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_3|NZ_CP009559.1_2583226_2583550_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_4|NZ_CP009559.1_2583740_2584052_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|NZ_CP009559.1_2584070_2584781_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|NZ_CP009559.1_2584780_2585260_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_CP009559.1_2585256_2586306_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP009559.1_2586286_2587048_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP009559.1_2587041_2587668_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
