assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000819525.2_ASM81952v2	NZ_CP006957	Mannheimia haemolytica USDA-ARS-USMARC-184 chromosome, complete genome	1	536841-536946	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK	Orphan	TGTAGAAGATCAAACCTAATCTGACAGT	28	1	2	536869-536918|536869-536918	NZ_CP006957.2_1400787-1400738|NZ_CP006957.2_1151332-1151381	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK	NA,NA|212aa|down_5|NZ_CP006957.2_547601_548237_+	NA|453aa|up_9|NZ_CP006957.2_528634_529993_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|412aa|up_8|NZ_CP006957.2_529995_531231_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|258aa|up_7|NZ_CP006957.2_531223_531997_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|209aa|up_6|NZ_CP006957.2_531996_532623_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_5|NZ_CP006957.2_532624_533221_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|410aa|up_4|NZ_CP006957.2_533231_534461_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|145aa|up_3|NZ_CP006957.2_534572_535007_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|98aa|up_2|NZ_CP006957.2_534999_535293_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|345aa|up_1|NZ_CP006957.2_535341_536376_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|82aa|up_0|NZ_CP006957.2_536388_536634_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|431aa|down_0|NZ_CP006957.2_538099_539392_-	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|1239aa|down_1|NZ_CP006957.2_539557_543274_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|668aa|down_2|NZ_CP006957.2_543381_545385_+	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N)	NA|456aa|down_3|NZ_CP006957.2_545483_546851_+	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|245aa|down_4|NZ_CP006957.2_546864_547599_+	cd16961, RMtype1_S_TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains	NA|212aa|down_5|NZ_CP006957.2_547601_548237_+	NA	NA|246aa|down_6|NZ_CP006957.2_548504_549242_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|323aa|down_7|NZ_CP006957.2_549238_550207_-	pfam01032, FecCD, FecCD transport family	NA|112aa|down_8|NZ_CP006957.2_550387_550723_+	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein	NA|108aa|down_9|NZ_CP006957.2_550706_551030_+	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein
GCF_000819525.2_ASM81952v2	NZ_CP006957	Mannheimia haemolytica USDA-ARS-USMARC-184 chromosome, complete genome	2	1476165-1476995	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK	 Type I-U?,Type I-U,Type I-C	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	12,12,12	12	TypeI-U?,TypeI-U,TypeI-C	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK	NA,NA|227aa|down_2|NZ_CP006957.2_1478676_1479357_+	NA|269aa|up_9|NZ_CP006957.2_1464368_1465175_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP006957.2_1465176_1466367_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP006957.2_1466378_1467131_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP006957.2_1467356_1468889_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP006957.2_1469325_1469736_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP006957.2_1469805_1470645_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP006957.2_1470681_1471365_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP006957.2_1471632_1472706_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP006957.2_1472783_1474286_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP006957.2_1474439_1475915_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP006957.2_1477185_1477479_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP006957.2_1477545_1478559_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP006957.2_1478676_1479357_+	NA	cas4|222aa|down_3|NZ_CP006957.2_1479458_1480124_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP006957.2_1480123_1480987_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP006957.2_1480996_1482781_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP006957.2_1482777_1483455_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP006957.2_1483691_1485443_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP006957.2_1485432_1486488_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP006957.2_1486618_1488907_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_000819525.2_ASM81952v2	NZ_CP006957	Mannheimia haemolytica USDA-ARS-USMARC-184 chromosome, complete genome	3	2005040-2005125	3	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK	Orphan	GTGAAACCGCTGACCCATTACCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK	NA,NA|176aa|down_4|NZ_CP006957.2_2009344_2009872_+	NA|689aa|up_9|NZ_CP006957.2_1987525_1989592_-	PRK10911, PRK10911, oligopeptidase A; Provisional	NA|247aa|up_8|NZ_CP006957.2_1989699_1990440_-	PRK11145, pflA, pyruvate formate lyase 1-activating protein	NA|342aa|up_7|NZ_CP006957.2_1990688_1991714_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|775aa|up_6|NZ_CP006957.2_1991948_1994273_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|275aa|up_5|NZ_CP006957.2_1994362_1995187_-	TIGR04060, formate_focA, formate transporter FocA	NA|165aa|up_4|NZ_CP006957.2_1995387_1995882_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|290aa|up_3|NZ_CP006957.2_1995935_1996805_-	PRK05457, PRK05457, protease HtpX	NA|355aa|up_2|NZ_CP006957.2_1996892_1997957_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|up_1|NZ_CP006957.2_1998079_1998991_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|589aa|up_0|NZ_CP006957.2_1999145_2000912_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|279aa|down_0|NZ_CP006957.2_2006066_2006903_-	COG1801, COG1801, Uncharacterized conserved protein [Function unknown]	NA|292aa|down_1|NZ_CP006957.2_2007010_2007886_+	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|147aa|down_2|NZ_CP006957.2_2008021_2008462_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|down_3|NZ_CP006957.2_2008474_2009215_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|176aa|down_4|NZ_CP006957.2_2009344_2009872_+	NA	NA|193aa|down_5|NZ_CP006957.2_2009938_2010517_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|427aa|down_6|NZ_CP006957.2_2010582_2011863_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|87aa|down_7|NZ_CP006957.2_2011972_2012233_-	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]	NA|108aa|down_8|NZ_CP006957.2_2012265_2012589_-	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|212aa|down_9|NZ_CP006957.2_2012600_2013236_-	PRK15117, PRK15117, phospholipid-binding protein MlaC
