The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP014523	Helicobacter pylori NY40	1696917	0	1339	1696917		Tupanvirus(100.0%)	1	NA	NA
WP_041049491.1|169_1339_+	cyclopropane fatty acid synthase	NA	A0A2K9L4K8	Tupanvirus	35.7	4.8e-52
>prophage 2
NZ_AP014523	Helicobacter pylori NY40	1696917	5285	13312	1696917	tRNA	Hokovirus(33.33%)	7	NA	NA
WP_041049498.1|5285_6812_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.7	8.2e-20
WP_001020235.1|6822_7311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041049500.1|7476_9867_-	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	A0A077SK27	Escherichia_phage	28.0	6.7e-61
WP_041049502.1|9972_10563_-	DUF3972 domain-containing protein	NA	NA	NA	NA	NA
WP_041049504.1|10588_11911_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_001100356.1|11929_12244_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
WP_041049507.1|12325_13312_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.3	9.3e-33
>prophage 3
NZ_AP014523	Helicobacter pylori NY40	1696917	20089	21664	1696917		Cedratvirus(100.0%)	1	NA	NA
WP_041049514.1|20089_21664_+	phosphoglycerate dehydrogenase	NA	A0A2R8FCS0	Cedratvirus	32.3	2.0e-37
>prophage 4
NZ_AP014523	Helicobacter pylori NY40	1696917	24978	31315	1696917		Bacillus_thuringiensis_phage(75.0%)	6	NA	NA
WP_041049521.1|24978_25914_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	34.2	1.3e-36
WP_041049523.1|25970_28403_+	chemotaxis histidine kinase/response regulator CheAY2	NA	Q56AR1	Bacillus_thuringiensis_phage	23.8	1.3e-11
WP_000070759.1|28399_28897_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_041049525.1|29151_29652_-	thiol peroxidase	NA	NA	NA	NA	NA
WP_041049527.1|29875_30517_+	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	33.2	6.5e-27
WP_041049529.1|30571_31315_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	S5VMD2	Pseudomonas_phage	28.2	7.8e-16
>prophage 5
NZ_AP014523	Helicobacter pylori NY40	1696917	48508	49075	1696917		Pseudomonas_phage(100.0%)	1	NA	NA
WP_000523102.1|48508_49075_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	61.8	1.1e-57
>prophage 6
NZ_AP014523	Helicobacter pylori NY40	1696917	53341	62477	1696917	tRNA	Tupanvirus(40.0%)	8	NA	NA
WP_041049558.1|53341_54478_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2K9L0G1	Tupanvirus	29.4	6.7e-27
WP_000454029.1|54788_55814_+	ribonucleotide-diphosphate reductase subunit beta	NA	A2PYN0	Cyanophage	34.3	1.2e-51
WP_041049560.1|55823_56453_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	38.8	2.3e-21
WP_041049562.1|56474_57512_+	LptF/LptG family permease	NA	NA	NA	NA	NA
WP_041049564.1|57512_58241_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_041049566.1|58234_59269_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	35.5	5.2e-42
WP_041049568.1|60170_61706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021175693.1|61724_62477_+	SDR family oxidoreductase	NA	F2NZ12	Diadromus_pulchellus_ascovirus	27.7	4.8e-05
>prophage 7
NZ_AP014523	Helicobacter pylori NY40	1696917	66153	70330	1696917		Synechococcus_phage(50.0%)	4	NA	NA
WP_041049580.1|66153_67431_+	glucose-6-phosphate dehydrogenase	NA	E3SKF6	Synechococcus_phage	35.6	8.6e-55
WP_041049582.1|67442_68126_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_041049583.1|68112_69123_+	glucokinase	NA	NA	NA	NA	NA
WP_041049585.1|69283_70330_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	44.2	6.8e-74
>prophage 8
NZ_AP014523	Helicobacter pylori NY40	1696917	78328	85914	1696917		Helicobacter_phage(66.67%)	5	NA	NA
WP_041049600.1|78328_79651_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	34.6	5.8e-22
WP_041049602.1|79721_80555_+	outer membrane protein	NA	NA	NA	NA	NA
WP_041049604.1|80565_82542_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_041049607.1|82582_83197_-	hypothetical protein	NA	A0A1S5RHF8	Helicobacter_phage	88.2	1.8e-71
WP_154231571.1|83568_85914_-	DUF3519 domain-containing protein	NA	A0A1S5REZ7	Helicobacter_phage	92.3	0.0e+00
>prophage 9
NZ_AP014523	Helicobacter pylori NY40	1696917	91486	92443	1696917		Klebsiella_phage(100.0%)	1	NA	NA
WP_172643920.1|91486_92443_-	DNA cytosine methyltransferase	NA	A0A0K1LQ98	Klebsiella_phage	35.8	3.3e-43
>prophage 10
NZ_AP014523	Helicobacter pylori NY40	1696917	104207	105877	1696917		Leptospira_phage(50.0%)	2	NA	NA
WP_041049638.1|104207_105080_-	ParB/RepB/Spo0J family partition protein	NA	S5WII0	Leptospira_phage	32.8	8.6e-14
WP_080311570.1|105082_105877_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	28.7	5.1e-13
>prophage 11
NZ_AP014523	Helicobacter pylori NY40	1696917	111926	113814	1696917	transposase	Helicobacter_phage(100.0%)	2	NA	NA
WP_041049651.1|111926_113186_-|transposase	transposase	transposase	A0A1S5RGV0	Helicobacter_phage	98.8	4.4e-237
WP_001042546.1|113160_113814_-|transposase	IS607 family transposase	transposase	A0A1S5RGS9	Helicobacter_phage	100.0	1.5e-116
>prophage 12
NZ_AP014523	Helicobacter pylori NY40	1696917	121522	125502	1696917	tRNA	uncultured_phage(50.0%)	2	NA	NA
WP_041049668.1|121522_122869_-	signal recognition particle protein	NA	D6PHS7	uncultured_phage	27.9	6.6e-05
WP_041049670.1|122883_125502_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	39.1	4.5e-143
>prophage 13
NZ_AP014523	Helicobacter pylori NY40	1696917	136461	137436	1696917		Tupanvirus(100.0%)	1	NA	NA
WP_041049688.1|136461_137436_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K9L162	Tupanvirus	22.4	7.3e-06
>prophage 14
NZ_AP014523	Helicobacter pylori NY40	1696917	145974	146721	1696917		Bacillus_virus(100.0%)	1	NA	NA
WP_041049702.1|145974_146721_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.5	5.6e-30
>prophage 15
NZ_AP014523	Helicobacter pylori NY40	1696917	149932	151240	1696917		Moraxella_phage(100.0%)	1	NA	NA
WP_041049710.1|149932_151240_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	31.6	2.6e-51
>prophage 16
NZ_AP014523	Helicobacter pylori NY40	1696917	160410	161172	1696917	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_041049721.1|160410_161172_+|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	34.7	4.2e-33
>prophage 17
NZ_AP014523	Helicobacter pylori NY40	1696917	168919	184590	1696917	tRNA	Tupanvirus(33.33%)	6	NA	NA
WP_041049734.1|168919_170248_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	26.4	3.9e-34
WP_041049736.1|170309_171359_+	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA	NA
WP_000101878.1|172848_174927_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.3	1.8e-62
WP_001254355.1|174938_175406_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142321.1|175421_175829_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_041049740.1|175917_184590_-	DNA-directed RNA polymerase subunit beta/beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.1	9.6e-65
>prophage 18
NZ_AP014523	Helicobacter pylori NY40	1696917	188222	193713	1696917		Aureococcus_anophage(33.33%)	4	NA	NA
WP_001040581.1|188222_189422_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	26.4	4.8e-31
WP_041049747.1|190119_191856_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.1	2.3e-26
WP_041049749.1|191866_192535_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_041049751.1|192723_193713_-	DNA adenine methylase	NA	A0A2L0UZL7	Agrobacterium_phage	48.0	5.8e-75
>prophage 19
NZ_AP014523	Helicobacter pylori NY40	1696917	203219	204604	1696917		Staphylococcus_phage(50.0%)	2	NA	NA
WP_041049767.1|203219_203906_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.7e-17
WP_080311575.1|203899_204604_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	40.7	6.9e-22
>prophage 20
NZ_AP014523	Helicobacter pylori NY40	1696917	218371	224852	1696917	tRNA	Halovirus(50.0%)	5	NA	NA
WP_041049791.1|218371_219499_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	31.8	1.8e-43
WP_000534794.1|219664_220669_+	formamidase	NA	NA	NA	NA	NA
WP_078258630.1|220747_221005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041049797.1|221743_222307_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_041049799.1|222308_224852_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	35.1	3.8e-70
>prophage 21
NZ_AP014523	Helicobacter pylori NY40	1696917	229320	233393	1696917		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000482463.1|229320_229866_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	31.3	3.5e-13
WP_001216698.1|229875_230304_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_041049807.1|230446_231469_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_041049810.1|231458_233393_-	VacB/RNase II family 3'-5' exoribonuclease	NA	Q0GXV6	Lactococcus_phage	29.1	2.7e-36
>prophage 22
NZ_AP014523	Helicobacter pylori NY40	1696917	241720	242410	1696917		Vibrio_phage(100.0%)	1	NA	NA
WP_041049823.1|241720_242410_+	NAD-dependent deacylase	NA	A0A126HHA0	Vibrio_phage	40.7	1.5e-29
>prophage 23
NZ_AP014523	Helicobacter pylori NY40	1696917	259255	266312	1696917		Acinetobacter_phage(75.0%)	7	NA	NA
WP_041049840.1|259255_260635_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	29.4	3.2e-47
WP_041049842.1|260811_261075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041049845.1|261405_262194_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_041049847.1|262190_263369_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_041049849.1|263369_264728_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	41.1	2.1e-35
WP_041049851.1|264720_265728_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	33.6	6.3e-45
WP_041049853.1|265730_266312_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	35.8	6.9e-20
>prophage 24
NZ_AP014523	Helicobacter pylori NY40	1696917	302693	305953	1696917		Catovirus(50.0%)	3	NA	NA
WP_041049909.1|302693_303803_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	31.7	1.6e-33
WP_041049910.1|303927_305058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041049911.1|305260_305953_+	NYN domain-containing protein	NA	A4JWQ6	Burkholderia_virus	38.2	2.5e-32
>prophage 25
NZ_AP014523	Helicobacter pylori NY40	1696917	313749	314478	1696917		Moraxella_phage(100.0%)	1	NA	NA
WP_041049929.1|313749_314478_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	96.9	1.2e-109
>prophage 26
NZ_AP014523	Helicobacter pylori NY40	1696917	317760	323876	1696917		Cercopithecine_herpesvirus(33.33%)	6	NA	NA
WP_041049937.1|317760_318462_-	uracil-DNA glycosylase	NA	A0A2D0TCL0	Cercopithecine_herpesvirus	38.5	1.6e-31
WP_041049939.1|318458_319181_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_041049941.1|319167_320331_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_041049943.1|320337_321702_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	25.5	6.4e-24
WP_052465557.1|321922_322831_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_041049945.1|322796_323876_-	site-specific DNA-methyltransferase	NA	A0A1W6JJW1	Lactococcus_phage	33.6	4.3e-31
>prophage 27
NZ_AP014523	Helicobacter pylori NY40	1696917	329430	330234	1696917		Tupanvirus(100.0%)	1	NA	NA
WP_041049950.1|329430_330234_-	phosphatidylserine decarboxylase	NA	A0A2K9L169	Tupanvirus	25.2	1.0e-05
>prophage 28
NZ_AP014523	Helicobacter pylori NY40	1696917	333456	338140	1696917		Marinomonas_phage(50.0%)	4	NA	NA
WP_041049954.1|333456_334917_-	replicative DNA helicase	NA	I6S783	Marinomonas_phage	35.3	5.4e-61
WP_041049956.1|334927_336328_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_080311582.1|336330_337533_-	copper-sensing histidine kinase CrdS	NA	NA	NA	NA	NA
WP_041049960.1|337498_338140_-	copper response regulator transcription factor CrdR	NA	A0A1V0SKI5	Klosneuvirus	27.5	1.3e-06
>prophage 29
NZ_AP014523	Helicobacter pylori NY40	1696917	345492	356233	1696917	protease	Bacillus_virus(33.33%)	9	NA	NA
WP_021177392.1|345492_346839_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	47.8	4.1e-108
WP_041049970.1|346840_347653_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_000438071.1|347655_348135_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_041051819.1|348317_348707_-	flagellar assembly protein FliW	NA	NA	NA	NA	NA
WP_041051821.1|349111_349774_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_041049973.1|349815_352311_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	38.1	4.6e-137
WP_041049975.1|352319_353147_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_041049977.1|353538_354402_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_041049979.1|354520_356233_-	site-specific DNA-methyltransferase	NA	A0A2R3ZYF2	Campylobacter_phage	40.6	8.2e-61
>prophage 30
NZ_AP014523	Helicobacter pylori NY40	1696917	369258	370368	1696917		Lactobacillus_phage(100.0%)	1	NA	NA
WP_154231591.1|369258_370368_+	DHH family protein	NA	K4I4F4	Lactobacillus_phage	25.3	5.6e-10
>prophage 31
NZ_AP014523	Helicobacter pylori NY40	1696917	373696	374143	1696917		Pneumococcus_phage(100.0%)	1	NA	NA
WP_041049992.1|373696_374143_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	58.0	1.8e-39
>prophage 32
NZ_AP014523	Helicobacter pylori NY40	1696917	381582	384345	1696917	tRNA	Bodo_saltans_virus(100.0%)	1	NA	NA
WP_041050007.1|381582_384345_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	27.5	3.2e-70
>prophage 33
NZ_AP014523	Helicobacter pylori NY40	1696917	389431	390421	1696917		Tetraselmis_virus(100.0%)	1	NA	NA
WP_041050020.1|389431_390421_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	33.6	2.5e-33
>prophage 34
NZ_AP014523	Helicobacter pylori NY40	1696917	394428	396191	1696917		Prochlorococcus_phage(50.0%)	2	NA	NA
WP_041050024.1|394428_395310_-	formyltetrahydrofolate deformylase	NA	E3SNR5	Prochlorococcus_phage	39.6	1.6e-15
WP_041050026.1|395312_396191_-	signal peptide peptidase SppA	NA	B8QTU8	Erwinia_phage	34.2	1.1e-19
>prophage 35
NZ_AP014523	Helicobacter pylori NY40	1696917	402973	406826	1696917		Staphylococcus_phage(66.67%)	9	NA	NA
WP_041050034.1|402973_403462_+	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	38.3	1.5e-15
WP_000906447.1|403479_403710_+	carbon storage regulator	NA	NA	NA	NA	NA
WP_041050037.1|403706_404513_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_000766473.1|404509_404968_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	37.4	6.5e-21
WP_000661837.1|404970_405423_+	TonB-system energizer ExbB	NA	NA	NA	NA	NA
WP_000755082.1|405433_405835_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_001847286.1|405906_406041_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_041050042.1|406000_406486_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_001245501.1|406472_406826_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	34.1	1.0e-05
>prophage 36
NZ_AP014523	Helicobacter pylori NY40	1696917	413622	415403	1696917	transposase	Helicobacter_phage(100.0%)	2	NA	NA
WP_041050054.1|413622_414906_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1S5RG13	Helicobacter_phage	97.0	4.9e-199
WP_029671249.1|415007_415403_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RG71	Helicobacter_phage	95.4	3.9e-67
>prophage 37
NZ_AP014523	Helicobacter pylori NY40	1696917	418625	418946	1696917		Staphylococcus_phage(100.0%)	1	NA	NA
WP_041050065.1|418625_418946_-	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.1	6.1e-10
>prophage 38
NZ_AP014523	Helicobacter pylori NY40	1696917	427102	427888	1696917		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000994586.1|427102_427888_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.7	1.4e-18
>prophage 39
NZ_AP014523	Helicobacter pylori NY40	1696917	431786	449369	1696917	tRNA	Bacillus_phage(25.0%)	17	NA	NA
WP_041050084.1|431786_434468_-	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	28.8	5.6e-48
WP_041050086.1|434532_435162_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_041050088.1|435133_435757_-	restriction endonuclease subunit S	NA	A0A1W6JNN3	Staphylococcus_phage	29.1	3.0e-05
WP_041050090.1|435753_437793_-	N-6 DNA methylase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	58.7	2.5e-213
WP_041050092.1|437825_438401_-	ComF family protein	NA	NA	NA	NA	NA
WP_041050094.1|438388_438964_-	dTMP kinase	NA	Q2XUX0	environmental_halophage	37.2	4.9e-10
WP_041050096.1|438965_439439_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	44.9	3.3e-28
WP_041050098.1|439438_440002_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_041050100.1|440011_440668_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_041050103.1|440664_442710_-	DNA helicase UvrD	NA	A7KV33	Bacillus_phage	34.9	7.7e-90
WP_041050105.1|442709_445244_-	anaphase-promoting protein	NA	NA	NA	NA	NA
WP_041050107.1|445253_446501_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.3	1.6e-77
WP_080311589.1|446501_447299_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_041050109.1|447302_447563_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_041050112.1|447572_448313_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_000395100.1|448339_448786_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA	NA
WP_041050114.1|448796_449369_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	34.7	1.0e-15
>prophage 40
NZ_AP014523	Helicobacter pylori NY40	1696917	455573	457175	1696917		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_041050124.1|455573_457175_-	inorganic phosphate transporter	NA	M4QMY4	Ostreococcus_lucimarinus_virus	31.9	8.3e-39
>prophage 41
NZ_AP014523	Helicobacter pylori NY40	1696917	465916	470026	1696917	tRNA	uncultured_virus(50.0%)	3	NA	NA
WP_041050146.1|465916_468268_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	27.3	3.7e-43
WP_000375319.1|468293_469010_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_041050149.1|468991_470026_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1V0SE20	Indivirus	27.1	3.2e-15
>prophage 42
NZ_AP014523	Helicobacter pylori NY40	1696917	481837	494381	1696917		uncultured_Mediterranean_phage(25.0%)	8	NA	NA
WP_041050168.1|481837_485545_-	class I SAM-dependent DNA methyltransferase	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	25.1	3.2e-09
WP_041050170.1|485760_488676_-	DEAD/DEAH box helicase family protein	NA	Q71TG1	Escherichia_phage	26.5	8.8e-71
WP_041050171.1|488678_489284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041050172.1|489264_490647_-	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	34.4	1.9e-52
WP_041050173.1|490689_492555_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_041050176.1|492636_492993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000765633.1|492996_493632_+	outer membrane protein	NA	NA	NA	NA	NA
WP_041050180.1|493628_494381_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.9	1.2e-59
>prophage 43
NZ_AP014523	Helicobacter pylori NY40	1696917	498578	501022	1696917		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_041050188.1|498578_500372_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HRE7	Paramecium_bursaria_Chlorella_virus	36.1	9.4e-92
WP_000451915.1|500395_501022_+	FAD-dependent thymidylate synthase	NA	I7JC35	Campylobacter_virus	47.0	7.2e-39
>prophage 44
NZ_AP014523	Helicobacter pylori NY40	1696917	505044	508020	1696917		Liberibacter_phage(100.0%)	1	NA	NA
WP_041050192.1|505044_508020_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	25.7	2.5e-57
>prophage 45
NZ_AP014523	Helicobacter pylori NY40	1696917	515886	516984	1696917		Tupanvirus(100.0%)	1	NA	NA
WP_041050200.1|515886_516984_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	39.8	7.4e-63
>prophage 46
NZ_AP014523	Helicobacter pylori NY40	1696917	524121	528235	1696917		Helicobacter_phage(100.0%)	5	NA	NA
WP_041050211.1|524121_524388_+	hypothetical protein	NA	A0A1S5RFL3	Helicobacter_phage	83.5	1.3e-26
WP_041050217.1|525637_526051_-	hypothetical protein	NA	A0A1S5RFF3	Helicobacter_phage	59.1	4.4e-37
WP_041050219.1|526047_526443_-	DUF1353 domain-containing protein	NA	A0A1S5RFS5	Helicobacter_phage	98.5	6.1e-68
WP_041050221.1|526439_526991_-	hypothetical protein	NA	A0A1S5RFL9	Helicobacter_phage	82.0	1.0e-76
WP_041050223.1|527002_528235_-	hypothetical protein	NA	A0A1S5RG99	Helicobacter_phage	87.1	2.5e-144
>prophage 47
NZ_AP014523	Helicobacter pylori NY40	1696917	533021	569836	1696917	transposase,holin,tRNA	Helicobacter_phage(65.38%)	36	NA	NA
WP_041050226.1|533021_534203_-	hypothetical protein	NA	A0A1S5RFD8	Helicobacter_phage	93.2	9.3e-189
WP_041050228.1|534202_535789_-	DNA primase	NA	A0A1S5RFR1	Helicobacter_phage	95.8	2.3e-291
WP_041050230.1|536996_538325_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1S5RHD5	Helicobacter_phage	94.9	6.4e-194
WP_000717700.1|538361_538778_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	96.4	9.2e-75
WP_041050231.1|540006_541563_+	phage-related CUP0950-like protein	NA	A0A1S5RGB2	Helicobacter_phage	95.8	2.9e-291
WP_041050232.1|541628_541832_+	hypothetical protein	NA	A0A1S5RFE5	Helicobacter_phage	79.1	5.9e-19
WP_041050233.1|541842_542058_+	hypothetical protein	NA	A0A1S5RF02	Helicobacter_phage	80.8	1.5e-20
WP_041051851.1|542068_542392_+|holin	phage holin family protein	holin	A0A1S5RFC0	Helicobacter_phage	85.8	1.7e-44
WP_041050234.1|542393_543392_+	hypothetical protein	NA	A0A1S5RFK3	Helicobacter_phage	78.3	5.0e-135
WP_041050236.1|543388_543607_+	hypothetical protein	NA	A0A1S5RF68	Helicobacter_phage	90.3	3.3e-31
WP_041050238.1|543654_544200_+	hypothetical protein	NA	A0A1S5RGT2	Helicobacter_phage	94.4	2.5e-96
WP_041050240.1|544201_544999_+	hypothetical protein	NA	A0A1S5RFP8	Helicobacter_phage	85.3	1.0e-114
WP_041050242.1|545024_545621_+	hypothetical protein	NA	A0A1S5RGQ6	Helicobacter_phage	60.4	4.4e-54
WP_041050244.1|545624_545945_+	hypothetical protein	NA	A0A1S5RFX4	Helicobacter_phage	86.7	9.3e-43
WP_041050246.1|546005_546887_+	hypothetical protein	NA	A0A1S5RFH8	Helicobacter_phage	81.0	1.3e-70
WP_041050248.1|546901_547684_+	hypothetical protein	NA	A0A1S5RFI9	Helicobacter_phage	84.8	1.1e-118
WP_041051854.1|547694_548459_+	hypothetical protein	NA	A0A1S5RFP7	Helicobacter_phage	96.1	1.4e-108
WP_041051856.1|549012_549765_+	cysteine-rich Sel1 repeat protein	NA	NA	NA	NA	NA
WP_041050250.1|549812_550676_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	31.8	3.8e-14
WP_041050252.1|550653_551307_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_041050254.1|551377_552250_+	class 1 fructose-bisphosphatase	NA	A0A1V0SEY8	Hokovirus	29.8	3.4e-18
WP_001887733.1|552249_552453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041050257.1|552465_553362_+	type II methylase	NA	E3T4J4	Cafeteria_roenbergensis_virus	39.2	9.4e-24
WP_041050260.1|553354_554086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041050262.1|554233_555301_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_033765240.1|555300_556095_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_041050264.1|556344_559185_+	RecB-like helicase	NA	S5M596	Bacillus_phage	24.7	1.5e-06
WP_041050266.1|559208_560525_+	sodium/proton antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	42.6	2.2e-69
WP_041050268.1|560572_560956_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_041050270.1|560952_562530_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_041050272.1|562538_563510_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	39.8	1.8e-41
WP_000383774.1|563519_563858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041050274.1|563867_566288_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.1	1.1e-151
WP_001202115.1|566284_566797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041050275.1|567962_568889_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	38.2	5.2e-09
WP_041050276.1|568897_569836_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	6.8e-17
>prophage 48
NZ_AP014523	Helicobacter pylori NY40	1696917	590167	595548	1696917		Dickeya_phage(20.0%)	7	NA	NA
WP_041050307.1|590167_590662_-	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	38.9	1.5e-18
WP_041050309.1|590658_591603_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	54.8	6.2e-18
WP_041050312.1|591602_592721_-	lytic transglycosylase domain-containing protein	NA	A0A1Y0SVL4	Pasteurella_phage	28.1	2.4e-08
WP_041050315.1|592809_593574_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_041050317.1|593649_594270_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	36.0	5.3e-26
WP_001044062.1|594270_594543_+	FlhB-like flagellar biosynthesis protein	NA	NA	NA	NA	NA
WP_041050319.1|594564_595548_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	1.5e-30
>prophage 49
NZ_AP014523	Helicobacter pylori NY40	1696917	600492	601515	1696917	tRNA	Moraxella_phage(100.0%)	1	NA	NA
WP_033584741.1|600492_601515_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	33.1	6.2e-40
>prophage 50
NZ_AP014523	Helicobacter pylori NY40	1696917	606391	607702	1696917		Staphylococcus_phage(50.0%)	2	NA	NA
WP_041050339.1|606391_606862_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	42.4	2.8e-27
WP_041050340.1|606871_607702_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	39.5	2.2e-43
>prophage 51
NZ_AP014523	Helicobacter pylori NY40	1696917	613405	617398	1696917		uncultured_virus(66.67%)	3	NA	NA
WP_001040313.1|613405_615046_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.9	3.7e-167
WP_041050349.1|615071_615428_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	47.2	2.3e-13
WP_041050351.1|615718_617398_+	DNA primase	NA	G9CU58	Helicobacter_phage	35.4	1.7e-58
>prophage 52
NZ_AP014523	Helicobacter pylori NY40	1696917	633287	634565	1696917		Phage_21(100.0%)	1	NA	NA
WP_041050378.1|633287_634565_+	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	70.4	2.8e-13
>prophage 53
NZ_AP014523	Helicobacter pylori NY40	1696917	638416	640642	1696917	protease	Agrobacterium_phage(100.0%)	1	NA	NA
WP_041050387.1|638416_640642_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	38.4	2.8e-125
>prophage 54
NZ_AP014523	Helicobacter pylori NY40	1696917	646386	648960	1696917		Hokovirus(50.0%)	2	NA	NA
WP_041050398.1|646386_647805_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.3	4.3e-47
WP_041050400.1|647814_648960_+	GDP-mannose 4,6-dehydratase	NA	A0A0E3F1J3	Synechococcus_phage	58.9	3.9e-115
>prophage 55
NZ_AP014523	Helicobacter pylori NY40	1696917	653951	656759	1696917		Acanthocystis_turfacea_Chlorella_virus(33.33%)	3	NA	NA
WP_041050408.1|653951_654944_-	agmatine deiminase family protein	NA	M1I5R4	Acanthocystis_turfacea_Chlorella_virus	32.0	4.8e-45
WP_041050410.1|655002_655695_-	site-specific DNA-methyltransferase	NA	A0A1W6JJW1	Lactococcus_phage	52.2	1.6e-63
WP_041050412.1|655691_656759_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	45.3	7.4e-84
>prophage 56
NZ_AP014523	Helicobacter pylori NY40	1696917	694402	696475	1696917		Vibrio_phage(100.0%)	1	NA	NA
WP_172643923.1|694402_696475_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	37.5	2.0e-37
>prophage 57
NZ_AP014523	Helicobacter pylori NY40	1696917	699811	707923	1696917		Lactococcus_phage(25.0%)	8	NA	NA
WP_041050462.1|699811_700636_+	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	31.5	7.8e-25
WP_041050464.1|700654_701095_-	alpha-(1,2)-fucosyltransferase FutC1	NA	A0A0K0KVL4	Prochlorococcus_phage	34.4	8.4e-10
WP_041050466.1|701132_701555_-	alpha-1,2-fucosyltransferase	NA	NA	NA	NA	NA
WP_041050468.1|701649_702180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041050470.1|702252_703197_+	D-2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	30.5	3.8e-23
WP_041050472.1|703409_704123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041050473.1|704230_705691_-	threonine synthase	NA	NA	NA	NA	NA
WP_041050475.1|705895_707923_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	85.1	9.3e-11
>prophage 58
NZ_AP014523	Helicobacter pylori NY40	1696917	712051	715949	1696917		Synechococcus_phage(50.0%)	2	NA	NA
WP_001875841.1|712051_714073_-	DNA methyltransferase	NA	A0A1D8KJW7	Synechococcus_phage	39.0	2.8e-44
WP_041050484.1|714251_715949_-	methyl-accepting chemotaxis protein TlpB	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.0	5.7e-14
>prophage 59
NZ_AP014523	Helicobacter pylori NY40	1696917	719053	723753	1696917		Pandoravirus(25.0%)	4	NA	NA
WP_041050491.1|719053_720196_-	cystathionine gamma-synthase	NA	A0A0B5JF98	Pandoravirus	27.3	7.3e-13
WP_041050493.1|720216_721134_-	cysteine synthase family protein	NA	C3U2M1	Lactococcus_phage	43.1	6.6e-65
WP_000235995.1|721374_721659_-	hypothetical protein	NA	L7TIP7	Escherichia_phage	40.2	2.1e-06
WP_000520987.1|721890_723753_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.7	2.4e-146
>prophage 60
NZ_AP014523	Helicobacter pylori NY40	1696917	730026	731304	1696917		Catovirus(100.0%)	1	NA	NA
WP_080311601.1|730026_731304_+	hypothetical protein	NA	A0A1V0SB35	Catovirus	32.4	1.5e-38
>prophage 61
NZ_AP014523	Helicobacter pylori NY40	1696917	735045	740287	1696917	tRNA	Hokovirus(33.33%)	3	NA	NA
WP_041050509.1|735045_737484_-	pyruvate, water dikinase	NA	A0A1V0SGR7	Hokovirus	36.7	4.0e-170
WP_041050511.1|737840_739679_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	37.9	1.0e-112
WP_000091346.1|739675_740287_+	translation initiation factor IF-3	NA	K4F6Y6	Cronobacter_phage	33.1	3.4e-09
>prophage 62
NZ_AP014523	Helicobacter pylori NY40	1696917	766335	768671	1696917		Bacillus_phage(50.0%)	2	NA	NA
WP_000952109.1|766335_767379_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	58.7	9.6e-113
WP_041050553.1|767390_768671_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	53.5	6.3e-122
>prophage 63
NZ_AP014523	Helicobacter pylori NY40	1696917	777043	780003	1696917		Bacillus_phage(50.0%)	4	NA	NA
WP_041050573.1|777043_777721_-	two-component system response regulator ArsR	NA	W8CYM9	Bacillus_phage	31.8	5.8e-26
WP_041050575.1|777955_778435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041050577.1|778425_778689_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_041050578.1|778722_780003_-	U32 family peptidase	NA	Q6DW11	Phage_TP	34.2	2.4e-41
>prophage 64
NZ_AP014523	Helicobacter pylori NY40	1696917	788012	789257	1696917		Streptococcus_phage(100.0%)	1	NA	NA
WP_000049816.1|788012_789257_+	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	29.2	1.3e-28
>prophage 65
NZ_AP014523	Helicobacter pylori NY40	1696917	792537	799182	1696917	tRNA	uncultured_Mediterranean_phage(25.0%)	6	NA	NA
WP_041050590.1|792537_793560_-	pseudaminic acid synthase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	34.5	1.2e-30
WP_041050592.1|793564_794206_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.7	3.0e-16
WP_041050594.1|794202_795480_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_033585045.1|795715_796417_+	CvpA family protein	NA	NA	NA	NA	NA
WP_041050597.1|796426_797932_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	40.3	1.2e-92
WP_041050599.1|797931_799182_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.5	5.7e-104
>prophage 66
NZ_AP014523	Helicobacter pylori NY40	1696917	810218	811855	1696917		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000655128.1|810218_811376_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	57.6	7.4e-122
WP_041050620.1|811441_811855_+	nucleoside-diphosphate kinase	NA	A0A0G2Y5H2	Acanthamoeba_polyphaga_mimivirus	40.5	7.1e-19
>prophage 67
NZ_AP014523	Helicobacter pylori NY40	1696917	823066	824932	1696917		Catovirus(100.0%)	1	NA	NA
WP_041050653.1|823066_824932_+	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	34.1	1.2e-94
>prophage 68
NZ_AP014523	Helicobacter pylori NY40	1696917	835645	837811	1696917		unidentified_phage(50.0%)	2	NA	NA
WP_000941649.1|835645_836809_+	cysteine desulfurase, NifS family	NA	H7BUW1	unidentified_phage	42.3	2.1e-39
WP_041050676.1|836830_837811_+	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A1B1IT19	uncultured_Mediterranean_phage	37.7	5.1e-15
>prophage 69
NZ_AP014523	Helicobacter pylori NY40	1696917	845312	846470	1696917		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_041050693.1|845312_846470_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	43.0	1.4e-72
>prophage 70
NZ_AP014523	Helicobacter pylori NY40	1696917	850689	851862	1696917		Ralstonia_phage(100.0%)	1	NA	NA
WP_015085458.1|850689_851862_+	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	31.0	1.1e-32
>prophage 71
NZ_AP014523	Helicobacter pylori NY40	1696917	860452	868532	1696917		Lactobacillus_phage(25.0%)	8	NA	NA
WP_000846467.1|860452_860887_-	DNA starvation/stationary phase protection protein	NA	A0A2K9VDB4	Lactobacillus_phage	29.2	7.0e-09
WP_041050721.1|861092_862238_-	acid survival sensor histidine kinase	NA	NA	NA	NA	NA
WP_000609416.1|862234_862552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000832069.1|862548_863577_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_041050724.1|863765_865244_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	37.2	6.0e-68
WP_041050726.1|865264_866353_+	membrane protein	NA	M1PGF9	Moumouvirus	23.3	4.1e-05
WP_041050728.1|866359_866899_+	DUF2393 domain-containing protein	NA	NA	NA	NA	NA
WP_041050730.1|866981_868532_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.9	1.5e-16
>prophage 72
NZ_AP014523	Helicobacter pylori NY40	1696917	872864	883503	1696917	protease	Cedratvirus(25.0%)	7	NA	NA
WP_041050736.1|872864_874100_+	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	33.0	1.2e-58
WP_041050738.1|874096_874525_+	flagellar FliJ family protein	NA	NA	NA	NA	NA
WP_041050740.1|874517_875177_+	MotE family protein	NA	NA	NA	NA	NA
WP_041050742.1|875173_876229_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_041050744.1|876241_877504_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	36.9	2.7e-40
WP_041050746.1|880101_880860_+	site-specific DNA-methyltransferase	NA	A0A0N9PB81	Sulfolobus_monocaudavirus	52.7	1.7e-66
WP_041050748.1|880932_883503_+	AAA family ATPase	NA	H6X3M6	Enterobacteria_phage	35.8	8.7e-115
>prophage 73
NZ_AP014523	Helicobacter pylori NY40	1696917	897267	900912	1696917	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_041050775.1|897267_898383_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	42.4	5.9e-76
WP_052465563.1|898439_899876_+	potassium transporter TrkA	NA	NA	NA	NA	NA
WP_041050779.1|899880_900912_+	3-dehydroquinate synthase	NA	E5ERI4	Ostreococcus_lucimarinus_virus	29.3	4.0e-26
>prophage 74
NZ_AP014523	Helicobacter pylori NY40	1696917	915197	916415	1696917		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_041050786.1|915197_916415_+	diaminopimelate decarboxylase	NA	M1I1D2	Acanthocystis_turfacea_Chlorella_virus	26.4	6.8e-17
>prophage 75
NZ_AP014523	Helicobacter pylori NY40	1696917	927536	929203	1696917		Planktothrix_phage(100.0%)	2	NA	NA
WP_024112135.1|927536_928400_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	3.0e-19
WP_041050799.1|928396_929203_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.5	6.5e-24
>prophage 76
NZ_AP014523	Helicobacter pylori NY40	1696917	934211	935090	1696917		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_041050810.1|934211_935090_+	carbon-nitrogen hydrolase family protein	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	29.2	5.4e-16
>prophage 77
NZ_AP014523	Helicobacter pylori NY40	1696917	946045	946666	1696917		Bacillus_phage(100.0%)	1	NA	NA
WP_000551233.1|946045_946666_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	32.9	8.8e-13
>prophage 78
NZ_AP014523	Helicobacter pylori NY40	1696917	960872	964048	1696917		Moraxella_phage(100.0%)	2	NA	NA
WP_041050853.1|960872_962423_-	single-stranded-DNA-specific exonuclease RecJ	NA	A0A0R6PDC6	Moraxella_phage	97.1	2.1e-148
WP_041050855.1|962431_964048_-	CTP synthase (glutamine hydrolyzing)	NA	A0A0R6PHX8	Moraxella_phage	97.0	4.6e-170
>prophage 79
NZ_AP014523	Helicobacter pylori NY40	1696917	970399	978660	1696917		Streptococcus_phage(33.33%)	6	NA	NA
WP_041051908.1|970399_972190_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	27.8	7.1e-23
WP_041050862.1|972204_972963_+	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_001011849.1|972965_973202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041050865.1|973693_974503_-	flagellar hook-basal body protein	NA	NA	NA	NA	NA
WP_041050867.1|974558_975845_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	25.3	2.8e-29
WP_041050869.1|976110_978660_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	46.6	5.1e-83
>prophage 80
NZ_AP014523	Helicobacter pylori NY40	1696917	985058	989419	1696917		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
WP_041050882.1|985058_985982_+	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	30.6	8.7e-25
WP_041050884.1|986233_987673_+	outer membrane beta-barrel protein HofB	NA	NA	NA	NA	NA
WP_041050886.1|987763_989419_+	ABC transporter ATP-binding protein	NA	A0A076FI99	Aureococcus_anophage	24.2	6.2e-29
>prophage 81
NZ_AP014523	Helicobacter pylori NY40	1696917	996460	1002926	1696917		uncultured_virus(33.33%)	6	NA	NA
WP_041050904.1|996460_998698_-	copper-translocating P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	31.8	1.4e-89
WP_001122192.1|998694_999408_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_041050906.1|999397_999652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041050908.1|999654_1001553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5ESM9	Bathycoccus_sp._RCC1105_virus	45.0	3.8e-99
WP_172643933.1|1001561_1002539_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_000772151.1|1002551_1002926_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.6	3.5e-09
>prophage 82
NZ_AP014523	Helicobacter pylori NY40	1696917	1006167	1009256	1696917		uncultured_Mediterranean_phage(50.0%)	4	NA	NA
WP_000461199.1|1006167_1006890_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	35.8	1.6e-29
WP_041050921.1|1006882_1007365_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
WP_000664481.1|1007432_1008443_-	Holliday junction branch migration DNA helicase RuvB	NA	NA	NA	NA	NA
WP_041050922.1|1008443_1009256_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	33.7	1.9e-39
>prophage 83
NZ_AP014523	Helicobacter pylori NY40	1696917	1016399	1022106	1696917		Cafeteria_roenbergensis_virus(50.0%)	4	NA	NA
WP_041050930.1|1016399_1019243_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.9	1.5e-30
WP_041050931.1|1019242_1019578_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_041050932.1|1019570_1020011_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_041050934.1|1020117_1022106_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	37.4	1.4e-83
>prophage 84
NZ_AP014523	Helicobacter pylori NY40	1696917	1033822	1034707	1696917		Clostridioides_phage(100.0%)	1	NA	NA
WP_001064484.1|1033822_1034707_+	flagellum site-determining protein YlxH	NA	A0A1V0DZZ0	Clostridioides_phage	27.7	7.4e-05
>prophage 85
NZ_AP014523	Helicobacter pylori NY40	1696917	1039388	1048020	1696917	protease	Bacillus_phage(25.0%)	8	NA	NA
WP_041050958.1|1039388_1040564_-	AAA family ATPase	NA	A0A127AWE7	Bacillus_phage	37.5	3.4e-58
WP_041050960.1|1040560_1040932_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041050962.1|1040941_1041817_-	DnaJ family protein	NA	M1PC06	Moumouvirus	55.1	1.9e-13
WP_041050964.1|1041984_1043235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080311624.1|1043340_1044177_-	5'-3' exonuclease	NA	A0A218MKA5	uncultured_virus	26.7	4.1e-05
WP_041050966.1|1044429_1045326_-	OriC activity response regulator	NA	NA	NA	NA	NA
WP_041050968.1|1045347_1046568_-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_001964763.1|1046589_1048020_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.4	5.3e-29
>prophage 86
NZ_AP014523	Helicobacter pylori NY40	1696917	1052615	1053950	1696917		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_041050977.1|1052615_1053950_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	25.9	7.6e-30
>prophage 87
NZ_AP014523	Helicobacter pylori NY40	1696917	1060295	1063451	1696917		Liberibacter_phage(100.0%)	1	NA	NA
WP_041050984.1|1060295_1063451_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	22.9	3.8e-11
>prophage 88
NZ_AP014523	Helicobacter pylori NY40	1696917	1074103	1076455	1696917	tRNA	Bacillus_virus(50.0%)	2	NA	NA
WP_041050999.1|1074103_1074901_+	sulfate/molybdate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	3.0e-21
WP_041051001.1|1075063_1076455_-|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	25.9	1.5e-12
>prophage 89
NZ_AP014523	Helicobacter pylori NY40	1696917	1080965	1085181	1696917		Erysipelothrix_phage(25.0%)	4	NA	NA
WP_000790243.1|1080965_1082765_+	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.6	1.1e-26
WP_024369543.1|1082780_1083710_+	DNA adenine methylase	NA	Q5GQR9	Synechococcus_phage	45.3	1.1e-67
WP_024369542.1|1083712_1084336_+	GIY-YIG nuclease family protein	NA	M4SMZ4	Cyanophage	37.2	1.1e-18
WP_154231578.1|1084695_1085181_+	DNA (cytosine-5-)-methyltransferase	NA	A0A2H4PAK4	Aphanizomenon_phage	39.6	1.3e-19
>prophage 90
NZ_AP014523	Helicobacter pylori NY40	1696917	1090122	1090953	1696917		Helicobacter_phage(100.0%)	1	NA	NA
WP_041051915.1|1090122_1090953_+	DUF3519 domain-containing protein	NA	A0A1S5RH15	Helicobacter_phage	87.4	8.4e-128
>prophage 91
NZ_AP014523	Helicobacter pylori NY40	1696917	1101344	1104811	1696917		Aurantimonas_phage(50.0%)	2	NA	NA
WP_041051030.1|1101344_1102469_+	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	19.8	2.5e-05
WP_041051032.1|1102489_1104811_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	36.7	3.3e-121
>prophage 92
NZ_AP014523	Helicobacter pylori NY40	1696917	1112101	1114033	1696917		Moumouvirus(100.0%)	1	NA	NA
WP_041051039.1|1112101_1114033_+	type IA DNA topoisomerase	NA	M1PXL0	Moumouvirus	28.3	4.3e-50
>prophage 93
NZ_AP014523	Helicobacter pylori NY40	1696917	1127472	1128129	1696917		Vibrio_virus(100.0%)	1	NA	NA
WP_041051070.1|1127472_1128129_-	ParA family protein	NA	A2I303	Vibrio_virus	23.4	5.5e-05
>prophage 94
NZ_AP014523	Helicobacter pylori NY40	1696917	1136622	1138404	1696917	transposase	Helicobacter_phage(100.0%)	2	NA	NA
WP_000717700.1|1136622_1137039_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	96.4	9.2e-75
WP_041050230.1|1137075_1138404_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1S5RHD5	Helicobacter_phage	94.9	6.4e-194
>prophage 95
NZ_AP014523	Helicobacter pylori NY40	1696917	1156854	1158066	1696917		Arthrobacter_phage(100.0%)	1	NA	NA
WP_041051092.1|1156854_1158066_+	peptidoglycan DD-metalloendopeptidase family protein	NA	V5R8R0	Arthrobacter_phage	41.3	1.7e-15
>prophage 96
NZ_AP014523	Helicobacter pylori NY40	1696917	1201083	1202415	1696917		Erwinia_phage(100.0%)	1	NA	NA
WP_041051141.1|1201083_1202415_+	HslU--HslV peptidase ATPase subunit	NA	A0A173GFL6	Erwinia_phage	28.0	1.8e-39
>prophage 97
NZ_AP014523	Helicobacter pylori NY40	1696917	1216878	1217742	1696917		Streptococcus_phage(100.0%)	1	NA	NA
WP_041051159.1|1216878_1217742_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	31.2	4.2e-29
>prophage 98
NZ_AP014523	Helicobacter pylori NY40	1696917	1223520	1224726	1696917		Erythrobacter_phage(50.0%)	2	NA	NA
WP_001163105.1|1223520_1223757_-	acyl carrier protein	NA	A0A1P8VVJ5	Erythrobacter_phage	43.5	9.4e-08
WP_001160867.1|1223982_1224726_-	3-oxoacyl-ACP reductase FabG	NA	F2NZ40	Diadromus_pulchellus_ascovirus	29.0	6.2e-13
>prophage 99
NZ_AP014523	Helicobacter pylori NY40	1696917	1231669	1237710	1696917	protease	Mycoplasma_phage(33.33%)	8	NA	NA
WP_041051181.1|1231669_1233160_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.5	3.9e-43
WP_000393405.1|1233207_1233786_-	DedA family protein	NA	NA	NA	NA	NA
WP_001006106.1|1233800_1234340_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.4	1.5e-32
WP_000495089.1|1234397_1234730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039082559.1|1234782_1235238_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_041051184.1|1235258_1235957_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_000670667.1|1235965_1236838_-	signal peptidase I	NA	NA	NA	NA	NA
WP_162972663.1|1236837_1237710_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	36.1	5.2e-35
>prophage 100
NZ_AP014523	Helicobacter pylori NY40	1696917	1260415	1263570	1696917		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_041051218.1|1260415_1261717_-	CZB domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.3	6.8e-15
WP_041051220.1|1261788_1263570_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	1.7e-16
>prophage 101
NZ_AP014523	Helicobacter pylori NY40	1696917	1269922	1273009	1696917		Leptospira_phage(100.0%)	1	NA	NA
WP_041051230.1|1269922_1273009_+	efflux RND transporter permease subunit HefC	NA	S5VTK5	Leptospira_phage	25.0	3.1e-74
>prophage 102
NZ_AP014523	Helicobacter pylori NY40	1696917	1284119	1295771	1696917	tRNA	Klosneuvirus(28.57%)	9	NA	NA
WP_041051239.1|1284119_1284824_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	30.3	1.8e-06
WP_000399905.1|1285144_1285477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041051242.1|1285602_1287573_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	33.9	1.3e-94
WP_041051244.1|1287650_1288592_+	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	29.3	8.3e-23
WP_041051246.1|1288626_1290360_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	22.6	3.1e-15
WP_000811210.1|1290376_1290952_+	adenylate kinase	NA	NA	NA	NA	NA
WP_041051248.1|1291162_1292161_+	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	26.3	3.3e-09
WP_154231583.1|1292218_1293217_+	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	26.3	4.3e-09
WP_001047003.1|1295249_1295771_+	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	46.4	1.5e-37
>prophage 103
NZ_AP014523	Helicobacter pylori NY40	1696917	1315547	1325988	1696917	transposase,tRNA	Helicobacter_phage(33.33%)	10	NA	NA
WP_041051273.1|1315547_1316225_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A1B0Z0B4	Vibrio_phage	50.0	6.8e-59
WP_041051275.1|1316287_1317502_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	30.4	1.3e-44
WP_041051276.1|1317515_1318019_+	polyketide cyclase	NA	NA	NA	NA	NA
WP_041050230.1|1318392_1319721_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1S5RHD5	Helicobacter_phage	94.9	6.4e-194
WP_000717700.1|1319757_1320174_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	96.4	9.2e-75
WP_041051280.1|1321052_1321706_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_041051281.1|1321869_1323189_+|tRNA	glutamate--tRNA ligase	tRNA	A0A1V0SI74	Klosneuvirus	22.8	4.9e-13
WP_041051283.1|1323185_1323479_+	YggT family protein	NA	NA	NA	NA	NA
WP_041051285.1|1323487_1325170_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_041051286.1|1325166_1325988_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.6	2.1e-62
>prophage 104
NZ_AP014523	Helicobacter pylori NY40	1696917	1333179	1338143	1696917		Mamastrovirus(100.0%)	3	NA	NA
WP_041051301.1|1333179_1334262_+	aminofutalosine synthase MqnE	NA	A9ZMK9	Mamastrovirus	30.3	2.2e-11
WP_080311639.1|1334344_1337080_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_001903684.1|1337081_1338143_+	dehypoxanthine futalosine cyclase	NA	A9ZMK9	Mamastrovirus	43.1	9.4e-23
>prophage 105
NZ_AP014523	Helicobacter pylori NY40	1696917	1343137	1345394	1696917		Salmonella_phage(33.33%)	3	NA	NA
WP_001873863.1|1343137_1343569_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	44.7	6.5e-31
WP_041051317.1|1343580_1344300_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	37.9	4.3e-27
WP_041051319.1|1344296_1345394_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	38.1	5.8e-60
>prophage 106
NZ_AP014523	Helicobacter pylori NY40	1696917	1361169	1369638	1696917	integrase	Clostridioides_phage(25.0%)	8	1347777:1347793	1370109:1370125
1347777:1347793	attL	AAAAAAGCGCTCTGCCT	NA	NA	NA	NA
WP_041051337.1|1361169_1362240_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2R2ZHE2	Clostridioides_phage	28.6	7.8e-09
WP_041051939.1|1362302_1362809_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	52.3	8.2e-25
WP_041051338.1|1362812_1363580_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_041051339.1|1363692_1364640_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_041051341.1|1364701_1367068_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	38.4	1.6e-139
WP_041051344.1|1367239_1367743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041051346.1|1367782_1368118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041051349.1|1368336_1369638_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	34.5	5.3e-28
1370109:1370125	attR	AAAAAAGCGCTCTGCCT	NA	NA	NA	NA
>prophage 107
NZ_AP014523	Helicobacter pylori NY40	1696917	1390141	1397719	1696917		Bacillus_virus(50.0%)	4	NA	NA
WP_041051375.1|1390141_1392628_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	34.4	2.1e-110
WP_014419541.1|1392627_1393101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000684525.1|1393097_1394243_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_172643926.1|1394893_1397719_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	50.9	4.7e-263
>prophage 108
NZ_AP014523	Helicobacter pylori NY40	1696917	1405380	1412199	1696917	transposase,tRNA	Helicobacter_phage(50.0%)	7	NA	NA
WP_041050230.1|1405380_1406709_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1S5RHD5	Helicobacter_phage	94.9	6.4e-194
WP_000717700.1|1406745_1407162_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	96.4	9.2e-75
WP_041051949.1|1407294_1407999_+	Fic family protein	NA	NA	NA	NA	NA
WP_041051390.1|1408010_1409255_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_000353241.1|1409257_1409980_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	2.1e-21
WP_000646609.1|1409992_1410394_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_041051393.1|1410390_1412199_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	40.2	3.1e-42
>prophage 109
NZ_AP014523	Helicobacter pylori NY40	1696917	1436681	1444479	1696917	tRNA	Hokovirus(33.33%)	8	NA	NA
WP_041051953.1|1436681_1437611_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.9	2.2e-47
WP_080311674.1|1437671_1438817_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_158226622.1|1438839_1439460_-	YcjF family protein	NA	NA	NA	NA	NA
WP_041051430.1|1439597_1440050_-	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_041051432.1|1440425_1441409_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.3	8.5e-10
WP_041051435.1|1441371_1442619_+	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
WP_041051437.1|1442629_1443811_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_021304951.1|1443807_1444479_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.9	3.1e-24
>prophage 110
NZ_AP014523	Helicobacter pylori NY40	1696917	1450538	1451417	1696917		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_041051450.1|1450538_1451417_+	carbon-nitrogen hydrolase	NA	M1HCD5	Acanthocystis_turfacea_Chlorella_virus	38.7	3.8e-46
>prophage 111
NZ_AP014523	Helicobacter pylori NY40	1696917	1456994	1457876	1696917		uncultured_phage(100.0%)	1	NA	NA
WP_041051459.1|1456994_1457876_+	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	47.6	1.6e-07
>prophage 112
NZ_AP014523	Helicobacter pylori NY40	1696917	1463330	1469321	1696917	tRNA	Bacillus_phage(33.33%)	4	NA	NA
WP_041051473.1|1463330_1464647_-	N-acetylmuramoyl-L-alanine amidase	NA	M4ZRP4	Bacillus_phage	48.5	4.9e-13
WP_041051475.1|1464653_1465745_-	decanoate oxidase/trans-2-decenoyl-[acyl-carrier protein] isomerase FabX	NA	NA	NA	NA	NA
WP_041051477.1|1465761_1466970_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CX69	Yersinia_phage	27.6	1.9e-27
WP_041051479.1|1466993_1469321_-	RelA/SpoT family protein	NA	J9Q7H7	Salmonella_phage	38.3	2.4e-10
>prophage 113
NZ_AP014523	Helicobacter pylori NY40	1696917	1484829	1490902	1696917		Organic_Lake_phycodnavirus(25.0%)	5	NA	NA
WP_041051502.1|1484829_1486128_-	restriction endonuclease subunit S	NA	F2Y1N5	Organic_Lake_phycodnavirus	26.8	1.5e-09
WP_041051504.1|1486174_1488235_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.1	1.0e-105
WP_041051505.1|1488259_1489780_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_041051506.1|1489785_1490310_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.7	5.5e-16
WP_000540573.1|1490314_1490902_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.1	1.7e-53
>prophage 114
NZ_AP014523	Helicobacter pylori NY40	1696917	1495922	1499492	1696917		Staphylococcus_phage(66.67%)	4	NA	NA
WP_000825060.1|1495922_1496501_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.0	2.9e-42
WP_041051521.1|1496589_1497429_-	DUF3943 domain-containing protein	NA	NA	NA	NA	NA
WP_000603421.1|1497514_1498549_-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	42.1	1.8e-50
WP_041051523.1|1498646_1499492_-	glycosyltransferase family 25 protein	NA	A0A1S5NQ44	Burkholderia_phage	30.1	3.3e-10
>prophage 115
NZ_AP014523	Helicobacter pylori NY40	1696917	1508880	1509522	1696917		Bacillus_virus(100.0%)	1	NA	NA
WP_041051538.1|1508880_1509522_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	37.6	2.7e-33
>prophage 116
NZ_AP014523	Helicobacter pylori NY40	1696917	1513659	1519159	1696917		Staphylococcus_phage(25.0%)	6	NA	NA
WP_000020199.1|1513659_1513980_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	45.9	1.2e-21
WP_000564427.1|1513985_1514921_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	41.5	3.3e-56
WP_041051551.1|1515302_1516124_+	glycosyltransferase family 25 protein	NA	A0A1S5NQ44	Burkholderia_phage	27.6	1.6e-09
WP_000790564.1|1516338_1516587_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_000401209.1|1516911_1517592_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_041051554.1|1517713_1519159_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	42.7	1.2e-100
>prophage 117
NZ_AP014523	Helicobacter pylori NY40	1696917	1524553	1524838	1696917		Shigella_phage(100.0%)	1	NA	NA
WP_041051567.1|1524553_1524838_+	HU family DNA-binding protein	NA	C8XUL7	Shigella_phage	40.2	1.5e-07
>prophage 118
NZ_AP014523	Helicobacter pylori NY40	1696917	1528565	1529549	1696917		Moumouvirus(100.0%)	1	NA	NA
WP_041051965.1|1528565_1529549_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	A0A2P1ELS8	Moumouvirus	35.3	1.1e-44
>prophage 119
NZ_AP014523	Helicobacter pylori NY40	1696917	1541626	1547343	1696917		Tupanvirus(40.0%)	5	NA	NA
WP_041051583.1|1541626_1543228_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	27.4	3.0e-49
WP_000862256.1|1543401_1544379_+	GMP reductase	NA	G3MBI2	Bacillus_virus	77.6	9.9e-144
WP_041051586.1|1544397_1544976_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.7	3.2e-17
WP_041051588.1|1544968_1546354_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A0K0KVL9	Prochlorococcus_phage	43.3	1.1e-23
WP_041051590.1|1546350_1547343_-	ADP-glyceromanno-heptose 6-epimerase	NA	A0A2K9L4U8	Tupanvirus	30.3	6.3e-21
>prophage 120
NZ_AP014523	Helicobacter pylori NY40	1696917	1551570	1552008	1696917		Bacteriophage(100.0%)	1	NA	NA
WP_033584183.1|1551570_1552008_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	47.4	5.6e-30
>prophage 121
NZ_AP014523	Helicobacter pylori NY40	1696917	1559642	1561160	1696917		Tupanvirus(100.0%)	1	NA	NA
WP_000247343.1|1559642_1561160_-	catalase	NA	A0A2K9L0T1	Tupanvirus	41.2	2.8e-105
>prophage 122
NZ_AP014523	Helicobacter pylori NY40	1696917	1566291	1566651	1696917		Helicobacter_phage(100.0%)	1	NA	NA
WP_158077482.1|1566291_1566651_-	DUF3519 domain-containing protein	NA	A0A1S5RF23	Helicobacter_phage	82.4	2.7e-46
>prophage 123
NZ_AP014523	Helicobacter pylori NY40	1696917	1570714	1572112	1696917	tRNA	Catovirus(100.0%)	1	NA	NA
WP_041051622.1|1570714_1572112_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	35.1	4.1e-50
>prophage 124
NZ_AP014523	Helicobacter pylori NY40	1696917	1576622	1577390	1696917		Indivirus(100.0%)	1	NA	NA
WP_000242349.1|1576622_1577390_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.5	2.9e-13
>prophage 125
NZ_AP014523	Helicobacter pylori NY40	1696917	1595972	1599742	1696917		Phaeocystis_globosa_virus(50.0%)	2	NA	NA
WP_041051652.1|1595972_1596548_+	hypothetical protein	NA	R4THR6	Phaeocystis_globosa_virus	33.3	1.3e-23
WP_041051654.1|1597711_1599742_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	28.4	5.5e-56
>prophage 126
NZ_AP014523	Helicobacter pylori NY40	1696917	1626246	1630528	1696917		Vibrio_phage(33.33%)	6	NA	NA
WP_041051680.1|1626246_1626789_+	GTP cyclohydrolase I FolE	NA	A0A2I7S8W4	Vibrio_phage	44.8	1.2e-37
WP_041051682.1|1626804_1627716_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_041051684.1|1627712_1628516_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	28.0	2.5e-20
WP_000591721.1|1628512_1629172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041051687.1|1629173_1629776_+	6-pyruvoyl tetrahydropterin synthase family protein	NA	NA	NA	NA	NA
WP_000775640.1|1629772_1630528_+	7-carboxy-7-deazaguanine synthase QueE	NA	I7II84	Campylobacter_virus	38.1	6.7e-39
>prophage 127
NZ_AP014523	Helicobacter pylori NY40	1696917	1636814	1637948	1696917		Yellowstone_lake_mimivirus(100.0%)	1	NA	NA
WP_041051697.1|1636814_1637948_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	30.8	6.9e-32
>prophage 128
NZ_AP014523	Helicobacter pylori NY40	1696917	1647518	1648175	1696917		Pseudomonas_phage(100.0%)	1	NA	NA
WP_041051711.1|1647518_1648175_+	nicotinamide-nucleotide amidohydrolase family protein	NA	B5TK85	Pseudomonas_phage	36.1	5.6e-18
>prophage 129
NZ_AP014523	Helicobacter pylori NY40	1696917	1662683	1665743	1696917		Leptospira_phage(100.0%)	1	NA	NA
WP_041051734.1|1662683_1665743_-	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	25.8	1.4e-82
>prophage 130
NZ_AP014523	Helicobacter pylori NY40	1696917	1670321	1671407	1696917		Pseudoalteromonas_phage(100.0%)	1	NA	NA
WP_041051741.1|1670321_1671407_+	hypothetical protein	NA	A0A2D1GN01	Pseudoalteromonas_phage	30.8	7.1e-10
