assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000828955.1_ASM82895v1	NZ_AP014523	Helicobacter pylori NY40	1	171898-172195	1	CRT	no		c2c9_V-U4,cas14j,DEDDh,cas3,cas2	Orphan	AGGTTTTTTGGCGTCTTTTTTATCTTTGTGAG	32	1	1	172092-172109	NZ_AP014523.1_172196-172213	NA	5	5	Orphan	c2c9_V-U4,cas14j,DEDDh,cas3,cas2	NA,NA	NA|444aa|up_9|NZ_AP014523.1_159059_160391_+	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|254aa|up_8|NZ_AP014523.1_160410_161172_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|384aa|up_7|NZ_AP014523.1_161181_162333_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|460aa|up_6|NZ_AP014523.1_162358_163738_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|392aa|up_5|NZ_AP014523.1_163898_165074_-	PRK03545, PRK03545, putative arabinose transporter; Provisional	NA|248aa|up_4|NZ_AP014523.1_165351_166095_+	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism]	NA|380aa|up_3|NZ_AP014523.1_166325_167465_-	pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874)	NA|347aa|up_2|NZ_AP014523.1_167892_168933_-	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)	NA|443aa|up_1|NZ_AP014523.1_168919_170248_-	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|350aa|up_0|NZ_AP014523.1_170309_171359_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|693aa|down_0|NZ_AP014523.1_172848_174927_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|156aa|down_1|NZ_AP014523.1_174938_175406_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|136aa|down_2|NZ_AP014523.1_175421_175829_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|2891aa|down_3|NZ_AP014523.1_175917_184590_-	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'	NA|126aa|down_4|NZ_AP014523.1_184812_185190_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|165aa|down_5|NZ_AP014523.1_185234_185729_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|235aa|down_6|NZ_AP014523.1_185837_186542_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|142aa|down_7|NZ_AP014523.1_186593_187019_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|176aa|down_8|NZ_AP014523.1_187036_187564_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|60aa|down_9|NZ_AP014523.1_187593_187773_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed
GCF_000828955.1_ASM82895v1	NZ_AP014523	Helicobacter pylori NY40	2	1153113-1153253	1	CRISPRCasFinder	no	cas14j	c2c9_V-U4,cas14j,DEDDh,cas3,cas2	Unclear	TTTTTTTTTGAACTTGTTTTTCTTGTCTTTTTTAGAGCTTGTGTTTGAATGAGT	54	1	1	1153167-1153199	NZ_AP014523.1_1153079-1153111	NA	1	1	TypeV	c2c9_V-U4,cas14j,DEDDh,cas3,cas2	NA|234aa|up_6|NZ_AP014523.1_1138410_1139112_-,NA|173aa|up_5|NZ_AP014523.1_1141604_1142123_-,NA|92aa|up_3|NZ_AP014523.1_1143515_1143791_-,NA|92aa|up_2|NZ_AP014523.1_1144362_1144638_-,NA|318aa|up_1|NZ_AP014523.1_1144654_1145608_-,NA|79aa|down_0|NZ_AP014523.1_1153774_1154011_-,NA|88aa|down_1|NZ_AP014523.1_1154022_1154286_-,NA|163aa|down_3|NZ_AP014523.1_1154569_1155058_-,NA|77aa|down_4|NZ_AP014523.1_1155050_1155281_-	NA|219aa|up_9|NZ_AP014523.1_1127472_1128129_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|139aa|up_8|NZ_AP014523.1_1136622_1137039_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|443aa|up_7|NZ_AP014523.1_1137075_1138404_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|234aa|up_6|NZ_AP014523.1_1138410_1139112_-	NA	NA|173aa|up_5|NZ_AP014523.1_1141604_1142123_-	NA	NA|464aa|up_4|NZ_AP014523.1_1142119_1143511_-	cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases	NA|92aa|up_3|NZ_AP014523.1_1143515_1143791_-	NA	NA|92aa|up_2|NZ_AP014523.1_1144362_1144638_-	NA	NA|318aa|up_1|NZ_AP014523.1_1144654_1145608_-	NA	NA|403aa|up_0|NZ_AP014523.1_1147845_1149054_-	COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]	NA|79aa|down_0|NZ_AP014523.1_1153774_1154011_-	NA	NA|88aa|down_1|NZ_AP014523.1_1154022_1154286_-	NA	NA|95aa|down_2|NZ_AP014523.1_1154297_1154582_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|163aa|down_3|NZ_AP014523.1_1154569_1155058_-	NA	NA|77aa|down_4|NZ_AP014523.1_1155050_1155281_-	NA	NA|404aa|down_5|NZ_AP014523.1_1156854_1158066_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|213aa|down_6|NZ_AP014523.1_1158065_1158704_+	TIGR00052, GDP-mannose_pyrophosphatase_NudK, nudix-type nucleoside diphosphatase, YffH/AdpP family	NA|451aa|down_7|NZ_AP014523.1_1158714_1160067_+	pfam15436, PGBA_N, Plasminogen-binding protein pgbA N-terminal	NA|460aa|down_8|NZ_AP014523.1_1160071_1161451_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|255aa|down_9|NZ_AP014523.1_1161473_1162238_+	TIGR00036, 4-hydroxy-tetrahydrodipicolinate_reductase, 4-hydroxy-tetrahydrodipicolinate reductase
GCF_000828955.1_ASM82895v1	NZ_AP014523	Helicobacter pylori NY40	3	1212285-1212435	2	CRISPRCasFinder	no		c2c9_V-U4,cas14j,DEDDh,cas3,cas2	Orphan	TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC	49	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas14j,DEDDh,cas3,cas2	NA|116aa|up_4|NZ_AP014523.1_1204493_1204841_+,NA|82aa|up_3|NZ_AP014523.1_1205164_1205410_+,NA|94aa|up_2|NZ_AP014523.1_1205417_1205699_+,NA|83aa|up_1|NZ_AP014523.1_1205700_1205949_+,NA|53aa|up_0|NZ_AP014523.1_1205963_1206122_+,NA|325aa|down_5|NZ_AP014523.1_1218450_1219425_+,NA|274aa|down_6|NZ_AP014523.1_1219421_1220243_+,NA|146aa|down_7|NZ_AP014523.1_1220314_1220752_-	NA|150aa|up_9|NZ_AP014523.1_1200088_1200538_+	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9	NA|181aa|up_8|NZ_AP014523.1_1200541_1201084_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|444aa|up_7|NZ_AP014523.1_1201083_1202415_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|302aa|up_6|NZ_AP014523.1_1202414_1203320_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_5|NZ_AP014523.1_1203316_1204309_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|116aa|up_4|NZ_AP014523.1_1204493_1204841_+	NA	NA|82aa|up_3|NZ_AP014523.1_1205164_1205410_+	NA	NA|94aa|up_2|NZ_AP014523.1_1205417_1205699_+	NA	NA|83aa|up_1|NZ_AP014523.1_1205700_1205949_+	NA	NA|53aa|up_0|NZ_AP014523.1_1205963_1206122_+	NA	NA|256aa|down_0|NZ_AP014523.1_1214265_1215033_-	TIGR00067, Glutamate_racemase, glutamate racemase	NA|439aa|down_1|NZ_AP014523.1_1215070_1216387_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|68aa|down_2|NZ_AP014523.1_1216650_1216854_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|288aa|down_3|NZ_AP014523.1_1216878_1217742_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|228aa|down_4|NZ_AP014523.1_1217754_1218438_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|325aa|down_5|NZ_AP014523.1_1218450_1219425_+	NA	NA|274aa|down_6|NZ_AP014523.1_1219421_1220243_+	NA	NA|146aa|down_7|NZ_AP014523.1_1220314_1220752_-	NA	NA|313aa|down_8|NZ_AP014523.1_1221216_1222155_-	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	NA|413aa|down_9|NZ_AP014523.1_1222176_1223415_-	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
