The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP014573	Mycobacterium tuberculosis str. Kurono	4415078	893173	951745	4415078	transposase,tRNA,protease,bacteriocin	Burkholderia_virus(16.67%)	54	NA	NA
WP_087902221.1|893173_894434_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935676.1|894489_895584_+|transposase	IS110-like element IS1547 family transposase	transposase	NA	NA	NA	NA
WP_003404092.1|895573_896371_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003404098.1|896367_897375_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_003404103.1|897419_898721_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003898592.1|898732_899080_+	VOC family protein	NA	NA	NA	NA	NA
WP_003404111.1|899073_899730_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003404114.1|899921_902186_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	64.3	8.1e-274
WP_003404117.1|902182_902812_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003404120.1|902932_903889_+	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA	NA	NA	NA	NA
WP_003898594.1|903833_905432_-	exopolysaccharide phosphotransferase CpsY	NA	NA	NA	NA	NA
WP_003404127.1|905736_906126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404129.1|906212_907796_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.6	2.6e-45
WP_003404132.1|907826_908921_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.3	2.3e-56
WP_003404135.1|909006_909189_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_003404137.1|909335_910442_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_003404139.1|910524_911394_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_003898596.1|911439_912120_-	FABP family protein	NA	NA	NA	NA	NA
WP_003404278.1|912282_912585_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003404293.1|912586_913420_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003898598.1|913712_914135_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_003404298.1|914131_914944_-	mannan chain length control protein LmeA	NA	NA	NA	NA	NA
WP_003898599.1|915073_915841_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	3.1e-15
WP_003404307.1|915837_916785_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_003404312.1|916827_917604_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	1.6e-16
WP_003404314.1|917659_918301_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003898600.1|918358_920413_-	LCP family protein	NA	NA	NA	NA	NA
WP_003898601.1|920578_921748_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003404321.1|921835_922852_-	acyl-ACP desaturase DesA1	NA	NA	NA	NA	NA
WP_003404326.1|923013_923655_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003898602.1|923735_924791_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_003404335.1|924842_925235_-	Ni(II)/Co(II)-sensing metalloregulatory transcriptional repressor KmtR	NA	NA	NA	NA	NA
WP_003404336.1|925292_925715_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003900218.1|925676_925967_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003404349.1|926071_926977_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404352.1|926995_927811_-	TIGR04255 family protein	NA	NA	NA	NA	NA
WP_010886090.1|931937_934586_-	PE family protein	NA	NA	NA	NA	NA
WP_003404362.1|935053_935698_+	sensor domain-containing protein	NA	NA	NA	NA	NA
WP_003898607.1|935678_936230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003906455.1|936379_937033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003404368.1|937103_938132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003898609.1|938820_939591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404373.1|939677_940490_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404376.1|940557_941418_-	proline-specific peptidase family protein	NA	NA	NA	NA	NA
WP_003404379.1|941693_941936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404382.1|942212_943505_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404384.1|943488_944493_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_003404388.1|944556_945207_-	two-component system response regulator NarL	NA	NA	NA	NA	NA
WP_003898611.1|945290_946568_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003404392.1|946780_948295_-	multicopper oxidase MmcO	NA	NA	NA	NA	NA
WP_003901025.1|948443_948836_+	lipoprotein LpqS	NA	NA	NA	NA	NA
WP_009935595.1|949038_950157_+	S-sulfocysteine synthase CysK2	NA	NA	NA	NA	NA
WP_003404402.1|950156_951416_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404404.1|951412_951745_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_AP014573	Mycobacterium tuberculosis str. Kurono	4415078	2945588	2980953	4415078	protease,transposase,integrase,head,terminase,tRNA,capsid	Tupanvirus(11.11%)	40	2974388:2974415	2985370:2985397
WP_003413486.1|2945588_2947667_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2947775_2948003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413569.1|2949728_2950229_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2950245_2950686_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2950832_2951510_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2951494_2951848_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2951860_2952286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2952282_2952957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2953034_2953856_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2953991_2954885_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_078836240.1|2954887_2955706_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2955720_2956902_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2956960_2957392_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2957905_2959147_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2959456_2959819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2960165_2961290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2961291_2961831_+	archease	NA	NA	NA	NA	NA
WP_003413616.1|2961970_2963269_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2963307_2963589_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2963733_2964219_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|2964245_2964500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2964503_2966840_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2966868_2967111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2967111_2967789_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2967984_2968641_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2968803_2969250_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2969424_2969757_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2969876_2970236_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2970337_2970796_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2970931_2971312_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2971308_2972805_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2973039_2973231_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
2974388:2974415	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2974521_2974953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2974949_2975948_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2975961_2976426_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2976558_2977819_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935348.1|2977846_2978032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899411.1|2978193_2979633_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2979640_2980174_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2980326_2980953_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2985370:2985397	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 3
NZ_AP014573	Mycobacterium tuberculosis str. Kurono	4415078	3104600	3128125	4415078	transposase,tRNA,integrase	Burkholderia_virus(50.0%)	25	3099842:3099855	3122745:3122758
3099842:3099855	attL	CATCGCCGACCGCC	NA	NA	NA	NA
WP_003899482.1|3104600_3105980_-|transposase	transposase	transposase	A0A7P9	Microcystis_virus	30.3	9.3e-31
WP_003414146.1|3105979_3106561_-|transposase	IS607-like element IS1602 family transposase	transposase	F9VHY9	Thermus_phage	30.6	5.0e-18
WP_003414147.1|3106762_3107659_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003414149.1|3107655_3108339_-	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
WP_003414151.1|3108335_3109310_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003900574.1|3109454_3110018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414155.1|3110017_3111706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414157.1|3111709_3112036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414158.1|3112166_3112796_+	DUF3558 family protein	NA	NA	NA	NA	NA
WP_003899485.1|3112814_3114464_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_003414166.1|3114565_3114922_-	type II toxin-antitoxin system toxin endoribonuclease MazF9	NA	NA	NA	NA	NA
WP_003901465.1|3114905_3115136_-	antitoxin MazE	NA	NA	NA	NA	NA
WP_003414172.1|3115178_3116222_-	DUF2293 domain-containing protein	NA	NA	NA	NA	NA
WP_003911993.1|3116412_3116688_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_003917684.1|3116863_3117118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938577.1|3117265_3117670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414184.1|3117666_3117858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045449875.1|3118056_3119211_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003899489.1|3119444_3119702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414190.1|3119806_3120118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414195.1|3120537_3121146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414198.1|3121216_3122626_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003899491.1|3122622_3123435_+	ExeA family protein	NA	NA	NA	NA	NA
3122745:3122758	attR	CATCGCCGACCGCC	NA	NA	NA	NA
WP_087902221.1|3124892_3126154_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_087902221.1|3126863_3128125_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
