assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	1	370586-371284	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	370874-370915|370949-370981	NZ_AP014573.1_378906-378947|NZ_AP014573.1_377721-377753	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_AP014573.1_367598_367901_+,NA|161aa|down_1|NZ_AP014573.1_380695_381178_-,NA|410aa|down_5|NZ_AP014573.1_383294_384524_+	NA|262aa|up_9|NZ_AP014573.1_362293_363079_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_AP014573.1_363067_363871_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_AP014573.1_363880_365278_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_AP014573.1_365456_367232_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_AP014573.1_367374_367602_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_AP014573.1_367598_367901_+	NA	NA|74aa|up_3|NZ_AP014573.1_367948_368170_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_AP014573.1_368166_368592_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_AP014573.1_368727_369360_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_AP014573.1_369356_370265_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_AP014573.1_380036_380708_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_AP014573.1_380695_381178_-	NA	NA|239aa|down_2|NZ_AP014573.1_381235_381952_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_AP014573.1_382053_382710_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_AP014573.1_382779_383271_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_AP014573.1_383294_384524_+	NA	NA|621aa|down_6|NZ_AP014573.1_384678_386541_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_AP014573.1_386612_386999_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_AP014573.1_387001_387637_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_AP014573.1_387724_388609_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	2	696127-696203	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_AP014573.1_681811_682027_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_AP014573.1_682023_682431_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_AP014573.1_682490_683177_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_AP014573.1_683330_685964_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_AP014573.1_685986_688374_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_AP014573.1_688511_689234_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_AP014573.1_689230_690028_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_AP014573.1_690029_690917_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_AP014573.1_690922_692137_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_AP014573.1_693160_694606_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_AP014573.1_697338_698889_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_AP014573.1_698940_699333_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_AP014573.1_699329_699587_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_AP014573.1_699769_701005_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_AP014573.1_701255_701669_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_AP014573.1_701665_701902_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_AP014573.1_702005_702512_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_AP014573.1_702625_703096_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_AP014573.1_703139_703901_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_AP014573.1_703957_704269_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	3	930722-931668	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	931504-931539|931504-931539|931504-931539	NZ_AP014573.1_679230-679195|NZ_AP014573.1_1217865-1217900|NZ_AP014573.1_2429230-2429195	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_AP014573.1_935678_936230_-,NA|81aa|down_8|NZ_AP014573.1_941693_941936_+	NA|685aa|up_9|NZ_AP014573.1_918358_920413_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_AP014573.1_920578_921748_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_AP014573.1_921835_922852_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_AP014573.1_923013_923655_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_AP014573.1_923735_924791_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_AP014573.1_924842_925235_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_AP014573.1_925292_925715_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_AP014573.1_925676_925967_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_AP014573.1_926071_926977_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_AP014573.1_926995_927811_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_AP014573.1_931937_934586_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_AP014573.1_935053_935698_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_AP014573.1_935678_936230_-	NA	NA|218aa|down_3|NZ_AP014573.1_936379_937033_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_AP014573.1_937103_938132_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_AP014573.1_938820_939591_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_AP014573.1_939677_940490_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_AP014573.1_940557_941418_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_AP014573.1_941693_941936_+	NA	NA|431aa|down_9|NZ_AP014573.1_942212_943505_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	4	1195432-1195540	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_AP014573.1_1184799_1186431_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_AP014573.1_1186506_1187571_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_AP014573.1_1187623_1188097_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_AP014573.1_1188130_1188994_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_AP014573.1_1188998_1189856_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_AP014573.1_1189856_1190939_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_AP014573.1_1191019_1191439_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_AP014573.1_1191550_1192117_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_AP014573.1_1192113_1192509_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_AP014573.1_1192536_1194540_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_AP014573.1_1196625_1198389_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_AP014573.1_1198385_1199159_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_AP014573.1_1199170_1200208_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_AP014573.1_1200394_1201231_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_AP014573.1_1201346_1202198_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_AP014573.1_1202271_1203489_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_AP014573.1_1203541_1204486_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_AP014573.1_1204882_1205776_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_AP014573.1_1205832_1207227_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_AP014573.1_1207428_1208151_+	pfam06271, RDD, RDD family
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	5	1216066-1216922	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	70	1216449-1216470|1216494-1216509|1216632-1216653|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767|1216749-1216767	NZ_AP014573.1_2964957-2964936|NZ_AP014573.1_2094079-2094064|NZ_AP014573.1_841536-841557|NZ_AP014573.1_338218-338200|NZ_AP014573.1_678894-678876|NZ_AP014573.1_1217592-1217610|NZ_AP014573.1_1635811-1635793|NZ_AP014573.1_1638637-1638619|NZ_AP014573.1_1642239-1642221|NZ_AP014573.1_2065319-2065301|NZ_AP014573.1_2065766-2065748|NZ_AP014573.1_2065865-2065847|NZ_AP014573.1_2806508-2806490|NZ_AP014573.1_2810035-2810017|NZ_AP014573.1_151390-151408|NZ_AP014573.1_334991-334973|NZ_AP014573.1_336218-336200|NZ_AP014573.1_339325-339307|NZ_AP014573.1_339778-339760|NZ_AP014573.1_339829-339811|NZ_AP014573.1_339838-339820|NZ_AP014573.1_342126-342108|NZ_AP014573.1_342255-342237|NZ_AP014573.1_342522-342504|NZ_AP014573.1_342551-342569|NZ_AP014573.1_342645-342627|NZ_AP014573.1_367176-367158|NZ_AP014573.1_447551-447533|NZ_AP014573.1_550895-550877|NZ_AP014573.1_628085-628103|NZ_AP014573.1_628307-628325|NZ_AP014573.1_678060-678042|NZ_AP014573.1_844319-844337|NZ_AP014573.1_1095085-1095103|NZ_AP014573.1_1095733-1095751|NZ_AP014573.1_1099802-1099784|NZ_AP014573.1_1217121-1217139|NZ_AP014573.1_1217511-1217529|NZ_AP014573.1_1494303-1494285|NZ_AP014573.1_1623775-1623757|NZ_AP014573.1_1624228-1624210|NZ_AP014573.1_1641357-1641339|NZ_AP014573.1_1641366-1641348|NZ_AP014573.1_1869687-1869669|NZ_AP014573.1_1870215-1870197|NZ_AP014573.1_2005231-2005249|NZ_AP014573.1_2094277-2094259|NZ_AP014573.1_2308949-2308931|NZ_AP014573.1_2362401-2362383|NZ_AP014573.1_2425056-2425074|NZ_AP014573.1_2429143-2429125|NZ_AP014573.1_2571864-2571846|NZ_AP014573.1_2698076-2698094|NZ_AP014573.1_2799823-2799805|NZ_AP014573.1_2800405-2800387|NZ_AP014573.1_3058993-3059011|NZ_AP014573.1_3059092-3059110|NZ_AP014573.1_3712036-3712054|NZ_AP014573.1_3745783-3745765|NZ_AP014573.1_3746407-3746389|NZ_AP014573.1_3746650-3746632|NZ_AP014573.1_3746783-3746765|NZ_AP014573.1_3809213-3809231|NZ_AP014573.1_3809396-3809414|NZ_AP014573.1_3809564-3809582|NZ_AP014573.1_3939931-3939949|NZ_AP014573.1_3941670-3941688|NZ_AP014573.1_3950141-3950159|NZ_AP014573.1_4035453-4035435|NZ_AP014573.1_4097857-4097875	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_AP014573.1_1211498_1211765_+,NA|61aa|down_3|NZ_AP014573.1_1219340_1219523_+,NA|35aa|down_4|NZ_AP014573.1_1219632_1219737_+	NA|465aa|up_9|NZ_AP014573.1_1205832_1207227_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_AP014573.1_1207428_1208151_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_AP014573.1_1208182_1209349_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_AP014573.1_1209419_1209914_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_AP014573.1_1210099_1210534_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_AP014573.1_1210635_1211502_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_AP014573.1_1211498_1211765_+	NA	NA|674aa|up_2|NZ_AP014573.1_1211751_1213773_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_AP014573.1_1213871_1214600_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_AP014573.1_1214710_1215499_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_AP014573.1_1218155_1218476_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_AP014573.1_1218628_1219063_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_AP014573.1_1219164_1219329_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_AP014573.1_1219340_1219523_+	NA	NA|35aa|down_4|NZ_AP014573.1_1219632_1219737_+	NA	NA|152aa|down_5|NZ_AP014573.1_1219714_1220170_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|605aa|down_6|NZ_AP014573.1_1220584_1222399_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_AP014573.1_1222616_1223555_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_AP014573.1_1223942_1225223_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_AP014573.1_1225327_1226155_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	6	1577278-1578350	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_7|NZ_AP014573.1_1568786_1569359_+,NA	NA|103aa|up_9|NZ_AP014573.1_1566556_1566865_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_AP014573.1_1566861_1568481_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NZ_AP014573.1_1568786_1569359_+	NA	NA|209aa|up_6|NZ_AP014573.1_1569493_1570120_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_AP014573.1_1570185_1570518_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_AP014573.1_1570533_1571790_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_AP014573.1_1571917_1573129_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_AP014573.1_1573201_1574680_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_AP014573.1_1574676_1576062_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_AP014573.1_1576139_1577174_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_AP014573.1_1579204_1579606_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_AP014573.1_1579602_1579860_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_AP014573.1_1579942_1580902_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_AP014573.1_1580926_1581889_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_AP014573.1_1582022_1582625_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_AP014573.1_1582705_1584673_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_AP014573.1_1584690_1585515_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_AP014573.1_1585683_1586166_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_AP014573.1_1586237_1587062_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_AP014573.1_1587258_1588197_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	7	2093749-2094003	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2093830-2093847|2093830-2093847|2093920-2093937	NZ_AP014573.1_405202-405185|NZ_AP014573.1_611540-611523|NZ_AP014573.1_3456562-3456545	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_AP014573.1_2093108_2093372_-,NA	NA|165aa|up_9|NZ_AP014573.1_2079458_2079953_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_AP014573.1_2080300_2080978_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_AP014573.1_2081336_2084162_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_AP014573.1_2084388_2085249_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_AP014573.1_2085289_2086156_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_AP014573.1_2086160_2088047_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_AP014573.1_2088062_2090096_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_AP014573.1_2090215_2092441_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_AP014573.1_2092716_2093112_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_AP014573.1_2093108_2093372_-	NA	NA|346aa|down_0|NZ_AP014573.1_2095140_2096178_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_AP014573.1_2096177_2097545_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_AP014573.1_2097718_2099158_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|486aa|down_3|NZ_AP014573.1_2099190_2100648_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_AP014573.1_2100677_2101628_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_AP014573.1_2101642_2102059_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_AP014573.1_2102336_2102759_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_AP014573.1_2102807_2103110_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_AP014573.1_2103106_2103421_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_AP014573.1_2103420_2105154_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	8	2174251-2174470	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_AP014573.1_2165426_2165834_-,NA|127aa|down_5|NZ_AP014573.1_2181986_2182367_-	NA|741aa|up_9|NZ_AP014573.1_2159394_2161617_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_AP014573.1_2161654_2162098_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_AP014573.1_2162211_2162805_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_AP014573.1_2162887_2163493_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_AP014573.1_2163592_2164597_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_AP014573.1_2164696_2165449_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_AP014573.1_2165426_2165834_-	NA	NA|368aa|up_2|NZ_AP014573.1_2165968_2167072_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_AP014573.1_2167071_2168268_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1437aa|up_0|NZ_AP014573.1_2168437_2172748_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_AP014573.1_2176497_2176962_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_AP014573.1_2177059_2177923_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_AP014573.1_2177960_2179232_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_AP014573.1_2179503_2180619_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_AP014573.1_2180609_2181950_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_AP014573.1_2181986_2182367_-	NA	NA|621aa|down_6|NZ_AP014573.1_2182523_2184386_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_AP014573.1_2184393_2184873_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_AP014573.1_2185109_2185883_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_AP014573.1_2185886_2186654_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	9	3123584-3124866	1,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,16,17	17	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_AP014573.1_3116863_3117118_-,NA|135aa|up_7|NZ_AP014573.1_3117265_3117670_+,NA|64aa|up_6|NZ_AP014573.1_3117666_3117858_+,NA|86aa|up_4|NZ_AP014573.1_3119444_3119702_+,NA|104aa|up_3|NZ_AP014573.1_3119806_3120118_+,NA|203aa|up_2|NZ_AP014573.1_3120537_3121146_+,NA	NA|92aa|up_9|NZ_AP014573.1_3116412_3116688_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_AP014573.1_3116863_3117118_-	NA	NA|135aa|up_7|NZ_AP014573.1_3117265_3117670_+	NA	NA|64aa|up_6|NZ_AP014573.1_3117666_3117858_+	NA	NA|385aa|up_5|NZ_AP014573.1_3118056_3119211_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_AP014573.1_3119444_3119702_+	NA	NA|104aa|up_3|NZ_AP014573.1_3119806_3120118_+	NA	NA|203aa|up_2|NZ_AP014573.1_3120537_3121146_+	NA	NA|470aa|up_1|NZ_AP014573.1_3121216_3122626_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_AP014573.1_3122622_3123435_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_AP014573.1_3124892_3126154_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|down_1|NZ_AP014573.1_3126863_3128125_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_2|NZ_AP014573.1_3129462_3129804_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_3|NZ_AP014573.1_3129804_3130821_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_4|NZ_AP014573.1_3130833_3131982_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_5|NZ_AP014573.1_3132077_3133205_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_6|NZ_AP014573.1_3133201_3134110_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_7|NZ_AP014573.1_3134090_3134801_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_8|NZ_AP014573.1_3134810_3135185_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_9|NZ_AP014573.1_3135181_3137611_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	10	3126188-3126818	8,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-C,Type III-B	GGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	37,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	8,8,7	8	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_AP014573.1_3116863_3117118_-,NA|135aa|up_8|NZ_AP014573.1_3117265_3117670_+,NA|64aa|up_7|NZ_AP014573.1_3117666_3117858_+,NA|86aa|up_5|NZ_AP014573.1_3119444_3119702_+,NA|104aa|up_4|NZ_AP014573.1_3119806_3120118_+,NA|203aa|up_3|NZ_AP014573.1_3120537_3121146_+,NA	NA|85aa|up_9|NZ_AP014573.1_3116863_3117118_-	NA	NA|135aa|up_8|NZ_AP014573.1_3117265_3117670_+	NA	NA|64aa|up_7|NZ_AP014573.1_3117666_3117858_+	NA	NA|385aa|up_6|NZ_AP014573.1_3118056_3119211_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_AP014573.1_3119444_3119702_+	NA	NA|104aa|up_4|NZ_AP014573.1_3119806_3120118_+	NA	NA|203aa|up_3|NZ_AP014573.1_3120537_3121146_+	NA	NA|470aa|up_2|NZ_AP014573.1_3121216_3122626_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_AP014573.1_3122622_3123435_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_AP014573.1_3124892_3126154_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|down_0|NZ_AP014573.1_3126863_3128125_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_AP014573.1_3129462_3129804_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_AP014573.1_3129804_3130821_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_AP014573.1_3130833_3131982_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_AP014573.1_3132077_3133205_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_AP014573.1_3133201_3134110_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_AP014573.1_3134090_3134801_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_AP014573.1_3134810_3135185_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_8|NZ_AP014573.1_3135181_3137611_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_AP014573.1_3137607_3138330_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	11	3128213-3129414	9,5,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,16,15	16	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_9|NZ_AP014573.1_3117265_3117670_+,NA|64aa|up_8|NZ_AP014573.1_3117666_3117858_+,NA|86aa|up_6|NZ_AP014573.1_3119444_3119702_+,NA|104aa|up_5|NZ_AP014573.1_3119806_3120118_+,NA|203aa|up_4|NZ_AP014573.1_3120537_3121146_+,NA	NA|135aa|up_9|NZ_AP014573.1_3117265_3117670_+	NA	NA|64aa|up_8|NZ_AP014573.1_3117666_3117858_+	NA	NA|385aa|up_7|NZ_AP014573.1_3118056_3119211_+	pfam00665, rve, Integrase core domain	NA|86aa|up_6|NZ_AP014573.1_3119444_3119702_+	NA	NA|104aa|up_5|NZ_AP014573.1_3119806_3120118_+	NA	NA|203aa|up_4|NZ_AP014573.1_3120537_3121146_+	NA	NA|470aa|up_3|NZ_AP014573.1_3121216_3122626_+	pfam00665, rve, Integrase core domain	NA|271aa|up_2|NZ_AP014573.1_3122622_3123435_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_1|NZ_AP014573.1_3124892_3126154_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|up_0|NZ_AP014573.1_3126863_3128125_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_AP014573.1_3129462_3129804_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_AP014573.1_3129804_3130821_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_AP014573.1_3130833_3131982_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_AP014573.1_3132077_3133205_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_AP014573.1_3133201_3134110_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_AP014573.1_3134090_3134801_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_AP014573.1_3134810_3135185_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_AP014573.1_3135181_3137611_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_AP014573.1_3137607_3138330_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_AP014573.1_3138729_3139275_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	12	3748995-3749536	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_AP014573.1_3763535_3763823_-,NA|88aa|down_9|NZ_AP014573.1_3776943_3777207_-	NA|147aa|up_9|NZ_AP014573.1_3727778_3728219_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_AP014573.1_3728252_3729122_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_AP014573.1_3729142_3730153_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_6|NZ_AP014573.1_3730425_3731070_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_AP014573.1_3731136_3732366_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_AP014573.1_3732648_3733998_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_AP014573.1_3734009_3735149_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_AP014573.1_3735145_3735877_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3114aa|up_1|NZ_AP014573.1_3735885_3745227_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_AP014573.1_3745275_3746292_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_AP014573.1_3751405_3751663_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_AP014573.1_3751918_3761392_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_AP014573.1_3762017_3762464_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_AP014573.1_3762500_3763241_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_AP014573.1_3763535_3763823_-	NA	NA|3717aa|down_5|NZ_AP014573.1_3764159_3775310_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_AP014573.1_3775553_3776348_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_AP014573.1_3776429_3776801_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_AP014573.1_3776698_3776917_-	pfam01565, FAD_binding_4, FAD binding domain	NA|88aa|down_9|NZ_AP014573.1_3776943_3777207_-	NA
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	13	3854962-3855051	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_8|NZ_AP014573.1_3848354_3848585_+,NA|121aa|up_7|NZ_AP014573.1_3848688_3849051_-,NA|73aa|up_2|NZ_AP014573.1_3853027_3853246_-,NA|121aa|down_0|NZ_AP014573.1_3856036_3856399_-,NA|52aa|down_2|NZ_AP014573.1_3858240_3858396_-,NA|52aa|down_3|NZ_AP014573.1_3858420_3858576_-,NA|238aa|down_6|NZ_AP014573.1_3862611_3863325_-	NA|409aa|up_9|NZ_AP014573.1_3847168_3848395_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_8|NZ_AP014573.1_3848354_3848585_+	NA	NA|121aa|up_7|NZ_AP014573.1_3848688_3849051_-	NA	NA|177aa|up_6|NZ_AP014573.1_3849213_3849744_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|233aa|up_5|NZ_AP014573.1_3850010_3850709_+	pfam00823, PPE, PPE family	NA|252aa|up_4|NZ_AP014573.1_3850859_3851615_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|441aa|up_3|NZ_AP014573.1_3851712_3853035_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_AP014573.1_3853027_3853246_-	NA	NA|100aa|up_1|NZ_AP014573.1_3853740_3854040_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_AP014573.1_3854125_3854668_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_AP014573.1_3856036_3856399_-	NA	NA|179aa|down_1|NZ_AP014573.1_3856561_3857098_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_AP014573.1_3858240_3858396_-	NA	NA|52aa|down_3|NZ_AP014573.1_3858420_3858576_-	NA	NA|461aa|down_4|NZ_AP014573.1_3859768_3861151_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_AP014573.1_3861188_3862610_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_AP014573.1_3862611_3863325_-	NA	NA|285aa|down_7|NZ_AP014573.1_3863335_3864190_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_AP014573.1_3864411_3866286_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_AP014573.1_3866307_3866784_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_000828995.1_ASM82899v1	NZ_AP014573	Mycobacterium tuberculosis str. Kurono	14	4114274-4114362	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_AP014573.1_4104860_4105631_-,NA|233aa|up_0|NZ_AP014573.1_4113378_4114077_-,NA|126aa|down_6|NZ_AP014573.1_4119597_4119975_+	NA|388aa|up_9|NZ_AP014573.1_4100531_4101695_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_AP014573.1_4101691_4102744_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_AP014573.1_4103242_4104106_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_AP014573.1_4104860_4105631_-	NA	NA|549aa|up_5|NZ_AP014573.1_4105627_4107274_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_AP014573.1_4107270_4108134_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_AP014573.1_4108126_4109053_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_AP014573.1_4109054_4110680_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_AP014573.1_4111387_4113343_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_AP014573.1_4113378_4114077_-	NA	NA|173aa|down_0|NZ_AP014573.1_4114422_4114941_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_AP014573.1_4114941_4115925_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_AP014573.1_4115917_4117111_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_AP014573.1_4117116_4117938_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_AP014573.1_4118069_4118753_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_AP014573.1_4118752_4119490_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_AP014573.1_4119597_4119975_+	NA	NA|225aa|down_7|NZ_AP014573.1_4120073_4120748_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_AP014573.1_4120853_4121648_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_AP014573.1_4121654_4122110_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
