assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000829035.1_ASM82903v1	NZ_AP012541	Lactobacillus paracasei subsp. paracasei JCM 8130	1	569457-569565	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3	Orphan	GGTCCTTACACGTAGGTTTCTGGTCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3	NA|576aa|up_4|NZ_AP012541.1_564070_565798_-,NA	NA|234aa|up_9|NZ_AP012541.1_558783_559485_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|120aa|up_8|NZ_AP012541.1_559636_559996_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|234aa|up_7|NZ_AP012541.1_559979_560681_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|674aa|up_6|NZ_AP012541.1_560831_562853_+	cd01951, lectin_L-type, legume lectins	NA|325aa|up_5|NZ_AP012541.1_562928_563903_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|576aa|up_4|NZ_AP012541.1_564070_565798_-	NA	NA|265aa|up_3|NZ_AP012541.1_565784_566579_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|183aa|up_2|NZ_AP012541.1_566831_567380_-	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|275aa|up_1|NZ_AP012541.1_567427_568252_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|307aa|up_0|NZ_AP012541.1_568410_569331_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|291aa|down_0|NZ_AP012541.1_569688_570561_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|762aa|down_1|NZ_AP012541.1_570538_572824_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|573aa|down_2|NZ_AP012541.1_573824_575543_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_3|NZ_AP012541.1_575547_577329_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_4|NZ_AP012541.1_577490_578735_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|239aa|down_5|NZ_AP012541.1_579021_579738_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|549aa|down_6|NZ_AP012541.1_579963_581610_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|668aa|down_7|NZ_AP012541.1_581700_583704_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|435aa|down_8|NZ_AP012541.1_584044_585349_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|492aa|down_9|NZ_AP012541.1_585570_587046_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_000829035.1_ASM82903v1	NZ_AP012541	Lactobacillus paracasei subsp. paracasei JCM 8130	2	650403-650510	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3	Orphan	CAGGGCTTTGGTCGTTTAGGTTCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3	NA|48aa|up_0|NZ_AP012541.1_650152_650296_+,NA|78aa|down_1|NZ_AP012541.1_651424_651658_-,NA|60aa|down_5|NZ_AP012541.1_654597_654777_+,NA|175aa|down_6|NZ_AP012541.1_654854_655379_+,NA|354aa|down_9|NZ_AP012541.1_657310_658372_-	NA|227aa|up_9|NZ_AP012541.1_640109_640790_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_AP012541.1_640811_641750_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_AP012541.1_641864_642866_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_AP012541.1_642904_643423_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_AP012541.1_643467_643896_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_AP012541.1_643900_644677_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_AP012541.1_645120_645747_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_AP012541.1_645807_646929_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_AP012541.1_646928_650054_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_AP012541.1_650152_650296_+	NA	NA|159aa|down_0|NZ_AP012541.1_650954_651431_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|78aa|down_1|NZ_AP012541.1_651424_651658_-	NA	NA|368aa|down_2|NZ_AP012541.1_651830_652934_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_AP012541.1_653144_653930_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_4|NZ_AP012541.1_653932_654601_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|60aa|down_5|NZ_AP012541.1_654597_654777_+	NA	NA|175aa|down_6|NZ_AP012541.1_654854_655379_+	NA	NA|211aa|down_7|NZ_AP012541.1_655611_656244_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|274aa|down_8|NZ_AP012541.1_656315_657137_-	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|354aa|down_9|NZ_AP012541.1_657310_658372_-	NA
GCF_000829035.1_ASM82903v1	NZ_AP012541	Lactobacillus paracasei subsp. paracasei JCM 8130	3	1808375-1808445	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3	Orphan	AAACCGGCTCAGTTCACGCTCTT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3	NA|146aa|up_2|NZ_AP012541.1_1803583_1804021_-,NA|125aa|down_9|NZ_AP012541.1_1823068_1823443_-	NA|380aa|up_9|NZ_AP012541.1_1796858_1797998_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|202aa|up_8|NZ_AP012541.1_1798076_1798682_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|155aa|up_7|NZ_AP012541.1_1799409_1799874_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_6|NZ_AP012541.1_1799866_1800319_-	PRK04351, PRK04351, SprT family protein	NA|251aa|up_5|NZ_AP012541.1_1800460_1801213_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|up_4|NZ_AP012541.1_1801205_1802105_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|up_3|NZ_AP012541.1_1802101_1803097_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|up_2|NZ_AP012541.1_1803583_1804021_-	NA	NA|887aa|up_1|NZ_AP012541.1_1804157_1806818_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|up_0|NZ_AP012541.1_1807125_1808283_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|down_0|NZ_AP012541.1_1808549_1809377_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|488aa|down_1|NZ_AP012541.1_1810575_1812039_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|down_2|NZ_AP012541.1_1812401_1813103_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|down_3|NZ_AP012541.1_1813127_1814273_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|down_4|NZ_AP012541.1_1814379_1815177_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|down_5|NZ_AP012541.1_1815189_1817166_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|down_6|NZ_AP012541.1_1817494_1818322_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|down_7|NZ_AP012541.1_1818383_1819850_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_AP012541.1_1820324_1822643_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_9|NZ_AP012541.1_1823068_1823443_-	NA
GCF_000829035.1_ASM82903v1	NZ_AP012541	Lactobacillus paracasei subsp. paracasei JCM 8130	4	1820049-1820166	4	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3	NA,NA|125aa|down_1|NZ_AP012541.1_1823068_1823443_-,NA|141aa|down_2|NZ_AP012541.1_1823582_1824005_-,NA|56aa|down_7|NZ_AP012541.1_1829707_1829875_-	NA|887aa|up_9|NZ_AP012541.1_1804157_1806818_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|up_8|NZ_AP012541.1_1807125_1808283_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_7|NZ_AP012541.1_1808549_1809377_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|488aa|up_6|NZ_AP012541.1_1810575_1812039_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_5|NZ_AP012541.1_1812401_1813103_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NZ_AP012541.1_1813127_1814273_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NZ_AP012541.1_1814379_1815177_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NZ_AP012541.1_1815189_1817166_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_AP012541.1_1817494_1818322_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_AP012541.1_1818383_1819850_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_AP012541.1_1820324_1822643_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_AP012541.1_1823068_1823443_-	NA	NA|141aa|down_2|NZ_AP012541.1_1823582_1824005_-	NA	NA|477aa|down_3|NZ_AP012541.1_1824567_1825998_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|379aa|down_4|NZ_AP012541.1_1826092_1827229_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_5|NZ_AP012541.1_1827337_1827655_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_6|NZ_AP012541.1_1827825_1829493_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_7|NZ_AP012541.1_1829707_1829875_-	NA	NA|704aa|down_8|NZ_AP012541.1_1829910_1832022_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|251aa|down_9|NZ_AP012541.1_1832699_1833452_-	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases
