The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009692	Bacillus mycoides strain ATCC 6462 chromosome, complete genome	5255868	220586	228534	5255868		Bacillus_phage(33.33%)	6	NA	NA
WP_016126477.1|220586_222092_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	30.8	1.6e-31
WP_002029454.1|222075_222777_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.9	7.3e-40
WP_002091603.1|222922_224248_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	30.2	2.4e-44
WP_164091242.1|224632_226174_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.2	3.4e-21
WP_002029451.1|226577_228212_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	57.8	2.2e-156
WP_002009985.1|228249_228534_-	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	53.8	4.4e-20
>prophage 3
NZ_CP009692	Bacillus mycoides strain ATCC 6462 chromosome, complete genome	5255868	1429608	1437251	5255868		uncultured_Caudovirales_phage(16.67%)	10	NA	NA
WP_003191683.1|1429608_1430592_+	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.1	6.5e-18
WP_033731383.1|1430581_1431352_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.6	9.9e-14
WP_002129321.1|1431383_1432148_+	class B sortase	NA	NA	NA	NA	NA
WP_002143312.1|1432217_1432541_-	heme oxygenase	NA	NA	NA	NA	NA
WP_002129320.1|1432789_1433989_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	40.5	6.1e-71
WP_001014315.1|1434032_1434227_-	YwbE family protein	NA	NA	NA	NA	NA
WP_002015431.1|1434227_1434401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002088884.1|1434571_1435264_+	response regulator transcription factor	NA	B5LWA6	Feldmannia_species_virus	28.8	1.8e-06
WP_002034262.1|1435265_1436201_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.9	2.5e-11
WP_003191672.1|1436327_1437251_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.5	1.2e-45
>prophage 4
NZ_CP009692	Bacillus mycoides strain ATCC 6462 chromosome, complete genome	5255868	3886150	3894984	5255868		Bacillus_phage(71.43%)	8	NA	NA
WP_002168604.1|3886150_3887029_-	aminoglycoside 6-adenylyltransferase	NA	A0A1X9I6F2	Streptococcus_phage	44.4	1.1e-64
WP_002168605.1|3887162_3887834_-	O-methyltransferase	NA	W8CYT3	Bacillus_phage	92.0	1.4e-64
WP_000818985.1|3887983_3888703_-	3-ketoacyl-ACP reductase	NA	W8CYX9	Bacillus_phage	100.0	5.9e-61
WP_016126786.1|3888871_3889945_-	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	87.4	1.6e-171
WP_002126920.1|3889941_3890619_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	90.7	3.5e-116
WP_002031356.1|3890705_3892466_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	94.5	1.8e-265
WP_002086164.1|3892741_3893506_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003188709.1|3893673_3894984_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	28.6	1.7e-10
>prophage 1
NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	360889	3601	75821	360889	transposase,integrase	Bacillus_phage(42.11%)	55	37445:37463	78065:78083
WP_033734500.1|3601_4750_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	37.7	7.5e-50
WP_003193346.1|4913_5594_-	DUF1266 domain-containing protein	NA	NA	NA	NA	NA
WP_033734502.1|5606_6905_-	J domain-containing protein	NA	NA	NA	NA	NA
WP_003193351.1|6901_8605_-	molecular chaperone HscC	NA	F2Y0P3	Organic_Lake_phycodnavirus	37.6	1.0e-87
WP_002191614.1|10193_11036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003193504.1|11363_11879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002191609.1|12341_12698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002191606.1|13257_13572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002191605.1|13584_13851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002191604.1|13862_14381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003193514.1|14730_15363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003193516.1|15797_17339_-	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_016127734.1|17961_18606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041867973.1|19207_20329_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	S6AND0	Bacillus_phage	80.2	2.4e-170
WP_003193706.1|20526_21276_+	DUF4362 domain-containing protein	NA	NA	NA	NA	NA
WP_033734589.1|21892_23257_+	erythromycin esterase family protein	NA	NA	NA	NA	NA
WP_033734508.1|25536_26883_+	Cys-Gln thioester bond-forming surface protein	NA	NA	NA	NA	NA
WP_002094912.1|28279_29449_+	DUF4046 domain-containing protein	NA	NA	NA	NA	NA
WP_078214605.1|29558_30209_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	58.1	2.0e-60
WP_033732430.1|30788_32402_+	S-layer homology domain-containing protein	NA	A0A1J0MS59	Bacillus_phage	54.9	6.6e-44
WP_002187074.1|32609_34394_+	S-layer homology domain-containing protein	NA	NA	NA	NA	NA
WP_033734559.1|34647_37395_+	M4 family metallopeptidase	NA	NA	NA	NA	NA
37445:37463	attL	TATGGTTCTGGTGCAAAAA	NA	NA	NA	NA
WP_003193599.1|38161_40375_+	cell wall-binding protein	NA	NA	NA	NA	NA
WP_003193597.1|40454_41138_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	45.2	1.4e-48
WP_002187084.1|41506_42691_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_002187085.1|42687_43368_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.0e-35
WP_002187086.1|43364_44564_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003193589.1|44672_45371_+	DUF1282 family protein	NA	NA	NA	NA	NA
WP_033713865.1|47438_47648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002187095.1|48263_49664_+	zinc dependent phospholipase C family protein	NA	NA	NA	NA	NA
WP_002187096.1|50214_50439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187098.1|51744_52008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187100.1|52412_54503_+	right-handed parallel beta-helix repeat-containing protein	NA	A0A0K2D0C1	Bacillus_phage	22.5	1.3e-15
WP_002187101.1|54610_55138_-|integrase	phage integrase N-terminal SAM-like domain-containing protein	integrase	NA	NA	NA	NA
WP_041867956.1|55867_56575_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	42.2	1.3e-41
WP_002187103.1|56882_59213_+	glycoside hydrolase	NA	NA	NA	NA	NA
WP_002187105.1|59894_61505_+	S-layer homology domain-containing protein	NA	A0A1J0MS59	Bacillus_phage	54.9	1.9e-43
WP_002187109.1|63084_63279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002191412.1|63281_63647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157263207.1|64407_64557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187112.1|65163_65523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002187113.1|65904_66165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187114.1|66203_66380_+	hypothetical protein	NA	A0A1B1P875	Bacillus_phage	86.0	1.4e-21
WP_002191414.1|66382_67012_+	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	60.2	3.8e-48
WP_003193183.1|67149_67521_+	ArpU family transcriptional regulator	NA	Q9ZXB9	Bacillus_phage	48.8	1.8e-21
WP_002187120.1|68368_68647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033734453.1|69008_69200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187122.1|69378_70086_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	43.7	9.3e-43
WP_003193178.1|70265_71651_+	S-layer homology domain-containing protein	NA	Q0H255	Geobacillus_phage	60.7	2.3e-77
WP_002069688.1|71653_71866_+	DUF3006 domain-containing protein	NA	Q0H256	Geobacillus_phage	51.5	7.3e-12
WP_002187126.1|72688_73129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187128.1|73153_73381_+	hypothetical protein	NA	A0A217ERD4	Bacillus_phage	53.6	1.2e-07
WP_002187129.1|73452_73731_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	62.3	1.6e-14
WP_002187131.1|73788_74001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033734452.1|74777_75821_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0E3T6D9	Bacillus_phage	23.4	2.2e-08
78065:78083	attR	TATGGTTCTGGTGCAAAAA	NA	NA	NA	NA
>prophage 2
NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	360889	205752	211275	360889		Bacillus_phage(50.0%)	9	NA	NA
WP_003193048.1|205752_205986_-	hypothetical protein	NA	A0A1B1P857	Bacillus_phage	83.1	1.5e-29
WP_002069589.1|206338_206536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003193045.1|207297_207669_-	ArpU family transcriptional regulator	NA	Q9ZXB9	Bacillus_phage	52.0	2.3e-21
WP_003193043.1|207823_208342_-	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	59.0	1.3e-46
WP_000140898.1|208443_208608_+	hypothetical protein	NA	A0A288WGN0	Bacillus_phage	50.0	1.0e-08
WP_002161752.1|209023_209239_+	spore germination protein	NA	A0A2H4J3A3	uncultured_Caudovirales_phage	83.8	3.4e-25
WP_016127797.1|209640_210108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002187359.1|210648_210876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016127798.1|210915_211275_-	DUF1071 domain-containing protein	NA	B7T0A4	Staphylococcus_virus	57.6	3.3e-20
>prophage 3
NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	360889	293120	302054	360889	transposase	Bacillus_phage(87.5%)	10	NA	NA
WP_003193333.1|293120_293918_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A172JHR8	Bacillus_phage	37.5	7.0e-31
WP_016127851.1|293966_294227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016127852.1|294505_295627_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	S6AND0	Bacillus_phage	81.0	8.9e-173
WP_033734418.1|296100_296442_-	YolD-like family protein	NA	NA	NA	NA	NA
WP_003192920.1|296438_297704_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	49.1	1.3e-108
WP_003192922.1|298034_298256_-	helix-turn-helix transcriptional regulator	NA	A0A0S2GLH4	Bacillus_phage	45.2	2.7e-09
WP_033734420.1|298544_298865_+	hypothetical protein	NA	A0A0S2GLK1	Bacillus_phage	68.9	7.9e-34
WP_003192925.1|298880_300047_+	DNA translocase FtsK	NA	W8CYG2	Bacillus_phage	81.7	4.7e-185
WP_016127863.1|300069_300642_+	replication-relaxation family protein	NA	W8CZ47	Bacillus_phage	77.0	6.3e-82
WP_002106904.1|301775_302054_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	70.5	1.4e-15
