assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000834375.1_ASM83437v1	NZ_CP009792	Yersinia pseudotuberculosis YPIII chromosome, complete genome	1	482845-482956	1	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA,NA	NA|268aa|up_9|NZ_CP009792.1_466324_467128_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|NZ_CP009792.1_467192_468521_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|NZ_CP009792.1_468596_470405_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|NZ_CP009792.1_470570_471188_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|784aa|up_5|NZ_CP009792.1_471409_473761_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|NZ_CP009792.1_474499_475873_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|258aa|up_3|NZ_CP009792.1_476039_476813_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NZ_CP009792.1_476995_478000_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NZ_CP009792.1_478250_479414_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NZ_CP009792.1_479787_482424_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|295aa|down_0|NZ_CP009792.1_483317_484202_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|812aa|down_1|NZ_CP009792.1_484434_486870_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|387aa|down_2|NZ_CP009792.1_486872_488033_-	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|106aa|down_3|NZ_CP009792.1_488410_488728_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|152aa|down_4|NZ_CP009792.1_489076_489532_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|72aa|down_5|NZ_CP009792.1_490056_490272_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|733aa|down_6|NZ_CP009792.1_490524_492723_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|343aa|down_7|NZ_CP009792.1_493075_494104_+	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional	NA|282aa|down_8|NZ_CP009792.1_494169_495015_+	PRK12757, PRK12757, cell division protein FtsN; Provisional	NA|175aa|down_9|NZ_CP009792.1_495114_495639_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV
GCF_000834375.1_ASM83437v1	NZ_CP009792	Yersinia pseudotuberculosis YPIII chromosome, complete genome	2	2278658-2278769	2	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	TTTGAAGAAAATTCCTAATGGTTAATTAAT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|234aa|up_5|NZ_CP009792.1_2270852_2271554_-,NA	NA|365aa|up_9|NZ_CP009792.1_2265379_2266474_+	PRK10760, PRK10760, murein hydrolase B; Provisional	NA|201aa|up_8|NZ_CP009792.1_2267715_2268318_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|161aa|up_7|NZ_CP009792.1_2268690_2269173_-	COG5435, COG5435, Uncharacterized conserved protein [Function unknown]	NA|561aa|up_6|NZ_CP009792.1_2269169_2270852_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|234aa|up_5|NZ_CP009792.1_2270852_2271554_-	NA	NA|446aa|up_4|NZ_CP009792.1_2271550_2272888_-	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc)	NA|344aa|up_3|NZ_CP009792.1_2272927_2273959_-	pfam00419, Fimbrial, Fimbrial protein	NA|398aa|up_2|NZ_CP009792.1_2273965_2275159_-	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|342aa|up_1|NZ_CP009792.1_2275257_2276283_-	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|627aa|up_0|NZ_CP009792.1_2276282_2278163_-	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]	NA|886aa|down_0|NZ_CP009792.1_2278946_2281604_+	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|182aa|down_1|NZ_CP009792.1_2281814_2282360_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|254aa|down_2|NZ_CP009792.1_2282516_2283278_+	PRK09926, PRK09926, fimbrial chaperone	NA|891aa|down_3|NZ_CP009792.1_2283405_2286078_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_4|NZ_CP009792.1_2286062_2286671_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|175aa|down_5|NZ_CP009792.1_2286776_2287301_+	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|501aa|down_6|NZ_CP009792.1_2287324_2288827_+	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|162aa|down_7|NZ_CP009792.1_2289159_2289645_+	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]	NA|180aa|down_8|NZ_CP009792.1_2289918_2290458_+	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|450aa|down_9|NZ_CP009792.1_2290461_2291811_+	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_000834375.1_ASM83437v1	NZ_CP009792	Yersinia pseudotuberculosis YPIII chromosome, complete genome	3	2470668-2473459	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	45,46,46	46	TypeI-F	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|372aa|up_2|NZ_CP009792.1_2466099_2467215_+,NA|425aa|up_1|NZ_CP009792.1_2467253_2468528_+,NA|70aa|down_9|NZ_CP009792.1_2485258_2485468_+	NA|463aa|up_9|NZ_CP009792.1_2457997_2459386_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NZ_CP009792.1_2459402_2460443_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NZ_CP009792.1_2460714_2462001_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NZ_CP009792.1_2462109_2462985_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NZ_CP009792.1_2462985_2463810_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP009792.1_2463956_2465012_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NZ_CP009792.1_2465038_2465977_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NZ_CP009792.1_2466099_2467215_+	NA	NA|425aa|up_1|NZ_CP009792.1_2467253_2468528_+	NA	NA|415aa|up_0|NZ_CP009792.1_2469085_2470330_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NZ_CP009792.1_2473818_2474799_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NZ_CP009792.1_2474795_2478083_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NZ_CP009792.1_2478238_2479585_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|317aa|down_3|NZ_CP009792.1_2479581_2480532_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NZ_CP009792.1_2480549_2481554_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP009792.1_2481564_2482119_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NZ_CP009792.1_2482196_2483216_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NZ_CP009792.1_2483226_2483730_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NZ_CP009792.1_2483776_2485135_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NZ_CP009792.1_2485258_2485468_+	NA
GCF_000834375.1_ASM83437v1	NZ_CP009792	Yersinia pseudotuberculosis YPIII chromosome, complete genome	4	3405597-3407425	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTNCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGTAGCTTAGAAA	28,28,28	1	1	3405685-3405716	NZ_CP009792.1_1999145-1999176	I-F:I-F:I-F	30,30,29	30	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA,NA|16aa|down_6|NZ_CP009792.1_3415744_3415792_+	NA|382aa|up_9|NZ_CP009792.1_3390985_3392131_-	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|426aa|up_8|NZ_CP009792.1_3392427_3393705_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_7|NZ_CP009792.1_3393736_3394579_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_6|NZ_CP009792.1_3394626_3395367_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_5|NZ_CP009792.1_3395832_3396255_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_4|NZ_CP009792.1_3396263_3397568_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1025aa|up_3|NZ_CP009792.1_3398760_3401835_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|106aa|up_2|NZ_CP009792.1_3401978_3402296_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NZ_CP009792.1_3402729_3403839_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NZ_CP009792.1_3404131_3405562_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NZ_CP009792.1_3407919_3409311_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NZ_CP009792.1_3409769_3410861_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|519aa|down_2|NZ_CP009792.1_3411146_3412703_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_3|NZ_CP009792.1_3412699_3413695_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_4|NZ_CP009792.1_3414096_3414387_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_5|NZ_CP009792.1_3414541_3415369_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_6|NZ_CP009792.1_3415744_3415792_+	NA	NA|300aa|down_7|NZ_CP009792.1_3416082_3416982_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_8|NZ_CP009792.1_3416985_3418317_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|383aa|down_9|NZ_CP009792.1_3418319_3419468_+	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional
GCF_000834375.1_ASM83437v1	NZ_CP009792	Yersinia pseudotuberculosis YPIII chromosome, complete genome	5	4003338-4003421	5	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	TAAGCTGCCTGTACGGCAGTGAAC	24	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA,NA|281aa|down_3|NZ_CP009792.1_4013458_4014301_+,NA|84aa|down_6|NZ_CP009792.1_4015950_4016202_-,NA|80aa|down_7|NZ_CP009792.1_4016240_4016480_-,NA|41aa|down_9|NZ_CP009792.1_4019329_4019452_+	NA|307aa|up_9|NZ_CP009792.1_3989375_3990296_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_8|NZ_CP009792.1_3990502_3992473_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_7|NZ_CP009792.1_3992521_3993655_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_6|NZ_CP009792.1_3993678_3994707_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_5|NZ_CP009792.1_3994718_3996266_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_4|NZ_CP009792.1_3996314_3997244_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|329aa|up_3|NZ_CP009792.1_3997351_3998338_-	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|642aa|up_2|NZ_CP009792.1_3998631_4000557_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|NZ_CP009792.1_4000591_4002118_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|NZ_CP009792.1_4002475_4003330_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|1993aa|down_0|NZ_CP009792.1_4003929_4009908_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|771aa|down_1|NZ_CP009792.1_4010015_4012328_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|82aa|down_2|NZ_CP009792.1_4012540_4012786_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|281aa|down_3|NZ_CP009792.1_4013458_4014301_+	NA	NA|134aa|down_4|NZ_CP009792.1_4014308_4014710_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|160aa|down_5|NZ_CP009792.1_4015447_4015927_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_6|NZ_CP009792.1_4015950_4016202_-	NA	NA|80aa|down_7|NZ_CP009792.1_4016240_4016480_-	NA	NA|639aa|down_8|NZ_CP009792.1_4017289_4019206_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|41aa|down_9|NZ_CP009792.1_4019329_4019452_+	NA
