The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009780	Yersinia pseudotuberculosis PB1/+ chromosome, complete genome	4695575	735542	779889	4695575	protease,plate,tail	Pseudomonas_phage(23.81%)	37	NA	NA
WP_002210815.1|735542_736052_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_002210816.1|736086_736344_-	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	54.9	4.0e-20
WP_002210817.1|736347_737478_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	7.6e-172
WP_002210818.1|737639_739928_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	64.9	1.1e-286
WP_002210820.1|740421_741150_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_012413581.1|741449_744125_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	34.4	1.4e-102
WP_012413582.1|744312_747186_+	two-component system sensor histidine kinase RcsC	NA	A0A1V0SGX0	Hokovirus	28.3	3.8e-42
WP_002210824.1|747253_747907_-	transcriptional regulator RcsB	NA	NA	NA	NA	NA
WP_011191996.1|747909_750603_-	phosphotransferase RcsD	NA	NA	NA	NA	NA
WP_002210825.1|750626_751781_-	MFS transporter	NA	NA	NA	NA	NA
WP_012413583.1|752884_754000_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	57.8	3.3e-111
WP_002228026.1|754739_755906_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA	NA
WP_012413584.1|756180_757707_-	MFS transporter	NA	NA	NA	NA	NA
WP_002230695.1|758083_759112_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_002208868.1|759185_760973_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.5	4.0e-10
WP_012413585.1|761424_762360_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA	NA
WP_002208866.1|762531_762774_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	65.0	6.9e-22
WP_002208864.1|762979_763702_-	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	51.9	2.2e-63
WP_002215470.1|763975_764455_+	antitermination protein Q	NA	S5M7R9	Escherichia_phage	61.0	2.3e-37
WP_012304340.1|764665_765970_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	46.2	2.6e-91
WP_032466639.1|766026_766698_+	aldolase	NA	A0A077SK32	Escherichia_phage	54.9	1.3e-57
WP_002208861.1|766700_767513_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002208860.1|767488_768283_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_011192001.1|768522_768813_+	hypothetical protein	NA	H6WRZ3	Salmonella_phage	46.3	7.7e-12
WP_002208858.1|768858_769476_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_002208857.1|769480_769675_+	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	60.4	3.5e-08
WP_002208856.1|769671_771180_+|tail	tail protein	tail	B5TK67	Pseudomonas_phage	44.2	2.4e-104
WP_002208855.1|771201_771570_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002208854.1|771571_771871_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_012413586.1|771991_773485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002208852.1|773751_775158_+	hypothetical protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
WP_012413587.1|775154_776210_+|tail	tail protein	tail	A0A2I7S9G1	Vibrio_phage	27.2	1.8e-37
WP_002215460.1|776225_776822_+|plate	baseplate assembly protein	plate	NA	NA	NA	NA
WP_002208848.1|776818_777274_+	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
WP_012413588.1|777277_778414_+|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.3	6.5e-30
WP_011192006.1|778410_779013_+	YmfQ family protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	38.6	2.0e-33
WP_002208845.1|779109_779889_+|tail	tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
>prophage 2
NZ_CP009780	Yersinia pseudotuberculosis PB1/+ chromosome, complete genome	4695575	985815	1052470	4695575	protease,plate,transposase	uncultured_Caudovirales_phage(25.0%)	55	NA	NA
WP_012413614.1|985815_986274_+|transposase	IS200/IS605-like element IS1541B family transposase	transposase	I4AZI8	Saccharomonospora_phage	30.7	2.1e-11
WP_012413615.1|986389_987664_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_002211286.1|987909_988098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002220006.1|988363_988882_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_002224683.1|988950_990702_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_002226586.1|990912_991368_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_002213066.1|991473_992535_-	porin OmpA	NA	NA	NA	NA	NA
WP_002213065.1|992892_993399_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_012413616.1|993627_994263_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_011192070.1|994364_996503_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_011192071.1|996532_996979_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_011192072.1|997172_999227_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	25.8	5.7e-16
WP_002213060.1|999287_999752_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002213058.1|999930_1000611_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_002213056.1|1000926_1001343_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_002213054.1|1001451_1001769_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_002213052.1|1001829_1003020_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	W6LLI2	Streptococcus_phage	28.1	2.1e-26
WP_002213049.1|1003113_1003392_+	acylphosphatase	NA	NA	NA	NA	NA
WP_002213046.1|1003443_1003773_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_011192073.1|1007096_1009514_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002213038.1|1009667_1010414_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.4	3.3e-14
WP_002213036.1|1011144_1011363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213034.1|1011626_1012151_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_011192074.1|1012140_1013424_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_012105362.1|1013425_1014163_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002213028.1|1014178_1015417_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_002213026.1|1015409_1016129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_002213025.1|1016130_1016883_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_002213024.1|1016885_1017674_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002228570.1|1017760_1018201_+	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_002213017.1|1018238_1018487_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_002213016.1|1018585_1019434_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_002211662.1|1020396_1020897_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_011192076.1|1020939_1022490_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_011192077.1|1022501_1023854_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_011192078.1|1023850_1024537_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_012413620.1|1024536_1026282_+	OmpA family protein	NA	NA	NA	NA	NA
WP_002210014.1|1026285_1026777_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_012413621.1|1027164_1029813_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.1	4.3e-93
WP_012413622.1|1029809_1032308_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.5	2.8e-17
WP_011192081.1|1032425_1033697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032467135.1|1033700_1034096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413624.1|1034411_1037114_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	32.5	5.2e-17
WP_011192084.1|1037116_1037533_+	DUF4431 domain-containing protein	NA	NA	NA	NA	NA
WP_011192085.1|1037541_1039290_+	TIGR02594 family protein	NA	A0A1U9ZAE8	Proteus_phage	29.0	9.8e-09
WP_011192086.1|1039294_1039807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413625.1|1040586_1041819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192088.1|1041815_1045238_+	type VI secretion system membrane subunit	NA	NA	NA	NA	NA
WP_011192089.1|1045281_1046883_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_011192090.1|1046900_1047959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002211939.1|1047973_1048429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192091.1|1048649_1050413_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_012413626.1|1050376_1051462_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_012105342.1|1051436_1052018_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_011192093.1|1052017_1052470_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 3
NZ_CP009780	Yersinia pseudotuberculosis PB1/+ chromosome, complete genome	4695575	1345099	1397715	4695575	plate,lysis,tail,holin,integrase,capsid,head,transposase,portal	Salmonella_phage(40.54%)	61	1349411:1349426	1407796:1407811
WP_012105206.1|1345099_1345315_-	phage transcriptional activator, Ogr/Delta	NA	S4TNZ3	Salmonella_phage	60.6	1.1e-18
WP_011192293.1|1345389_1346484_-	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	65.7	1.9e-127
WP_012413670.1|1346480_1346945_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	56.2	1.2e-43
WP_012413671.1|1346956_1349872_-|tail	phage tail tape measure protein	tail	Q9ZXK0	Pseudomonas_virus	52.8	2.6e-155
1349411:1349426	attL	CAGCGCGGCGGTGGTG	NA	NA	NA	NA
WP_071819140.1|1349864_1349984_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_011192297.1|1349998_1350346_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	51.6	8.6e-18
WP_011192298.1|1350399_1350915_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	66.3	2.5e-61
WP_011192299.1|1350926_1352102_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	79.8	1.3e-179
WP_011192300.1|1352235_1352715_-|tail	phage tail protein	tail	F1BUP0	Erwinia_phage	41.9	1.2e-28
WP_012413672.1|1352726_1354166_-	hypothetical protein	NA	F1BUP1	Erwinia_phage	77.8	2.2e-75
WP_011192302.1|1354162_1354771_-|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	75.0	1.7e-85
WP_011192303.1|1354763_1355672_-|plate	baseplate assembly protein	plate	F1BUP3	Erwinia_phage	73.2	1.3e-118
WP_011192304.1|1355674_1356028_-|plate	baseplate assembly protein	plate	A0A218M4K8	Erwinia_phage	59.3	2.4e-31
WP_011192305.1|1356024_1356660_-|plate	phage baseplate assembly protein V	plate	O80314	Escherichia_phage	62.0	1.3e-64
WP_012413673.1|1356888_1357368_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_012413674.1|1357378_1358044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413676.1|1358237_1358684_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	51.4	2.2e-34
WP_011192308.1|1358680_1359148_-|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	57.2	1.8e-42
WP_072083431.1|1359134_1359359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012304190.1|1359246_1359669_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	48.6	4.9e-23
WP_012304189.1|1359673_1360069_-	M15 family metallopeptidase	NA	A9DET4	Yersinia_phage	71.0	1.2e-47
WP_011192311.1|1360055_1360442_-|holin	holin	holin	NA	NA	NA	NA
WP_011192312.1|1360471_1360675_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	70.1	1.8e-23
WP_012413677.1|1360674_1361166_-|head	head completion/stabilization protein	head	A0A1S5NNA6	Burkholderia_phage	50.3	3.3e-31
WP_012413678.1|1361400_1362054_-	hypothetical protein	NA	F1BUQ7	Erwinia_phage	47.7	7.8e-44
WP_012413679.1|1362060_1363116_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	62.8	1.9e-124
WP_012413680.1|1363152_1363968_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	71.1	1.3e-75
WP_012413681.1|1364138_1365902_+	oxidoreductase	NA	A0A1S6KZW3	Salmonella_phage	63.7	4.0e-228
WP_012413682.1|1365901_1366939_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	62.7	1.5e-129
WP_012413683.1|1367046_1367325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413685.1|1368015_1368360_-	hypothetical protein	NA	H9C172	Pectobacterium_phage	40.7	5.0e-18
WP_012413686.1|1368356_1368587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012413687.1|1368567_1371123_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	35.8	7.1e-125
WP_012413688.1|1371119_1371983_-	DNA cytosine methyltransferase	NA	W0LM09	Edwardsiella_phage	59.7	1.2e-105
WP_012413689.1|1371979_1372798_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L011	Salmonella_phage	55.5	7.4e-76
WP_012304179.1|1372794_1373448_-	3'-5' exonuclease	NA	A0A1D9C9N8	Salinivibrio_phage	61.2	1.5e-55
WP_012304178.1|1373504_1374266_-	hypothetical protein	NA	K7ZRM8	Xanthomonas_citri_phage	49.3	1.9e-09
WP_012304177.1|1374348_1374654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012304176.1|1374684_1374945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012304174.1|1375086_1375401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012304173.1|1375397_1375604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012304172.1|1375615_1375819_-	hypothetical protein	NA	U3PFJ1	Vibrio_phage	41.1	9.8e-06
WP_012304171.1|1375831_1376023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011192328.1|1376083_1376452_+	helix-turn-helix domain-containing protein	NA	A0A2H4JFL3	uncultured_Caudovirales_phage	39.8	5.2e-13
WP_011192329.1|1376472_1378170_+	DUF4041 domain-containing protein	NA	A0A142LP25	Marinitoga_camini_virus	62.5	9.0e-76
WP_011192331.1|1378678_1379059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413690.1|1380372_1380597_-|integrase	integrase	integrase	K7PLZ2	Enterobacterial_phage	76.8	6.6e-19
WP_002215401.1|1381155_1381383_+	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	57.7	2.1e-12
WP_002213223.1|1382507_1382690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011192335.1|1383050_1383395_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_086025313.1|1383614_1385128_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_012413696.1|1386084_1387353_+	MFS transporter	NA	NA	NA	NA	NA
WP_011192338.1|1387349_1389083_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011192339.1|1389072_1389798_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011192340.1|1389785_1390640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413697.1|1390639_1391437_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011192342.1|1391433_1392600_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_011192343.1|1392574_1393132_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002215413.1|1396860_1397148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213212.1|1397164_1397464_-	lysozyme	NA	A0A218M4K8	Erwinia_phage	64.9	2.6e-23
WP_032467055.1|1397460_1397715_-|plate	phage baseplate assembly protein V	plate	F1BUP5	Erwinia_phage	61.1	3.1e-17
1407796:1407811	attR	CAGCGCGGCGGTGGTG	NA	NA	NA	NA
>prophage 4
NZ_CP009780	Yersinia pseudotuberculosis PB1/+ chromosome, complete genome	4695575	2841351	2928459	4695575	tail,holin,protease,tRNA,integrase,capsid,head,terminase,portal	Cronobacter_phage(40.54%)	83	2852382:2852397	2905670:2905685
WP_012413886.1|2841351_2843643_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	40.6	1.1e-153
WP_002209924.1|2844042_2844441_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_011192920.1|2844900_2845263_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002214785.1|2845325_2845586_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	36.0	7.4e-06
WP_002209928.1|2846183_2846369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413889.1|2846510_2847494_-|integrase	tyrosine-type recombinase/integrase	integrase	Q83VS6	Escherichia_phage	59.9	2.6e-112
WP_012413890.1|2847560_2847860_-	helix-turn-helix transcriptional regulator	NA	Q1JS63	Enterobacteria_phage	59.6	6.7e-27
WP_011192923.1|2847973_2848246_+	hypothetical protein	NA	Q1JS60	Enterobacteria_phage	68.9	8.8e-34
WP_012413891.1|2848242_2848455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413893.1|2848829_2849174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413894.1|2849177_2849381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012413895.1|2849523_2849745_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_012413896.1|2849753_2850104_+	DUF5347 family protein	NA	NA	NA	NA	NA
WP_012413897.1|2850175_2850412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413898.1|2850411_2851077_+	DUF3850 domain-containing protein	NA	A0A1S6KVH3	Escherichia_phage	52.7	1.6e-12
WP_011192928.1|2851086_2851788_+	3'-5' exonuclease	NA	A2I2Z6	Vibrio_virus	52.7	8.6e-49
WP_012413900.1|2852134_2854630_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	43.3	2.5e-175
2852382:2852397	attL	AACGTCAGCGATTTAT	NA	NA	NA	NA
WP_012413901.1|2854645_2854975_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_071819120.1|2854978_2856076_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	61.5	3.7e-123
WP_012413904.1|2858111_2859047_+|capsid	phage capsid scaffolding protein	capsid	A5X9H4	Aeromonas_virus	54.3	3.5e-37
WP_012413905.1|2859129_2860296_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	50.3	6.2e-84
WP_012413906.1|2860310_2861054_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	53.2	2.6e-64
WP_012303715.1|2861173_2861626_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	52.7	2.8e-37
WP_012413907.1|2861622_2862129_+	hypothetical protein	NA	F1BUL7	Cronobacter_phage	38.9	4.6e-20
WP_012303713.1|2862088_2862790_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	43.8	3.3e-40
WP_012413908.1|2862786_2863953_+	DUF2586 family protein	NA	F1BUL5	Cronobacter_phage	52.2	2.5e-101
WP_011192940.1|2863955_2864411_+	DUF2597 family protein	NA	A5X9I1	Aeromonas_virus	58.3	7.0e-44
WP_012413909.1|2864420_2864723_+|holin	holin	holin	C7BGD7	Burkholderia_phage	39.3	1.7e-09
WP_012413910.1|2864719_2865061_+	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	78.2	2.2e-42
WP_012413911.1|2865060_2865435_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	40.2	3.2e-10
WP_011192944.1|2865549_2865825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413912.1|2865869_2866049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012413913.1|2866050_2868027_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	41.3	2.3e-131
WP_012413914.1|2868023_2868353_+	DUF2590 family protein	NA	Q94MY3	Haemophilus_virus	61.3	7.9e-29
WP_011192947.1|2868349_2869534_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	59.3	3.9e-134
WP_011192948.1|2869526_2870150_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	57.9	1.2e-57
WP_012413915.1|2870159_2871755_+|tail	phage tail protein	tail	F1BUK3	Cronobacter_phage	39.9	1.4e-54
WP_012413916.1|2871754_2872273_+|tail	tail assembly chaperone	tail	A9DEL3	Yersinia_phage	50.0	8.3e-41
WP_042592930.1|2872269_2872980_+	hypothetical protein	NA	Q94MX8	Haemophilus_virus	26.3	1.9e-11
WP_012303705.1|2872972_2873527_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	51.1	1.0e-36
WP_012413918.1|2873523_2875245_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	48.5	5.8e-123
WP_011192954.1|2876067_2877282_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	58.8	3.7e-132
WP_002209930.1|2877714_2879232_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	37.0	1.1e-85
WP_002228062.1|2879241_2880340_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	5.4e-05
WP_012413920.1|2880518_2882252_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.8	9.5e-65
WP_012413921.1|2882258_2882975_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_002209933.1|2883005_2883905_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.7	8.5e-33
WP_002209934.1|2884011_2884530_+	flavodoxin FldB	NA	NA	NA	NA	NA
WP_032466588.1|2884614_2886072_-	cell envelope integrity protein CreD	NA	NA	NA	NA	NA
WP_012413923.1|2886192_2887611_-	two-component system sensor histidine kinase CreC	NA	NA	NA	NA	NA
WP_002209937.1|2887635_2888334_-	two-component system response regulator CreB	NA	NA	NA	NA	NA
WP_012104676.1|2888333_2888759_-	membrane protein	NA	NA	NA	NA	NA
WP_002209939.1|2888739_2889006_-	FAD assembly factor SdhE	NA	NA	NA	NA	NA
WP_012413924.1|2889322_2890315_+|tRNA	tRNA-modifying protein YgfZ	tRNA	NA	NA	NA	NA
WP_002209941.1|2890387_2890885_-	DUF2165 family protein	NA	NA	NA	NA	NA
WP_012413925.1|2891159_2891861_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_012413926.1|2892062_2893166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012413927.1|2893269_2895420_-	autotransporter adhesin YapN	NA	NA	NA	NA	NA
WP_002209946.1|2896478_2896916_-	lipocalin-like domain-containing protein	NA	NA	NA	NA	NA
WP_002209947.1|2897293_2900173_-	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	52.3	1.7e-268
WP_002209948.1|2900384_2900771_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_002209949.1|2900839_2901937_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_012104673.1|2902634_2903855_-	FAD-dependent 2-octaprenylphenol hydroxylase	NA	NA	NA	NA	NA
WP_002209951.1|2904027_2905206_-	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA	NA
WP_012413930.1|2905257_2906571_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
2905670:2905685	attR	AACGTCAGCGATTTAT	NA	NA	NA	NA
WP_002209953.1|2906658_2907237_-	YecA family protein	NA	NA	NA	NA	NA
WP_002209954.1|2907573_2907903_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_012413931.1|2908248_2908845_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002209956.1|2909109_2910351_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	46.5	2.1e-98
WP_002209957.1|2910657_2911314_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_002209958.1|2911655_2912564_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_011192966.1|2912574_2913354_-	oxidative stress defense protein	NA	NA	NA	NA	NA
WP_002209960.1|2913543_2914161_-	arginine exporter ArgO	NA	NA	NA	NA	NA
WP_002209961.1|2914423_2915293_-	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA	NA
WP_012413932.1|2915730_2916810_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002209963.1|2916929_2918093_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_002209964.1|2918195_2919212_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_011192968.1|2919608_2921603_-	transketolase	NA	NA	NA	NA	NA
WP_011192969.1|2922076_2922829_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_002209968.1|2922933_2923254_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA	NA
WP_002209969.1|2923413_2925393_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA	NA
WP_002209971.1|2926599_2927754_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	62.1	1.7e-126
WP_011192970.1|2927946_2928459_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
>prophage 5
NZ_CP009780	Yersinia pseudotuberculosis PB1/+ chromosome, complete genome	4695575	3212154	3244549	4695575	tail,holin,tRNA,capsid,head,terminase,portal	Cronobacter_phage(78.57%)	37	NA	NA
WP_002212201.1|3212154_3213168_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.7	6.5e-106
WP_001144069.1|3213580_3213796_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_002210358.1|3213931_3215680_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	8.7e-74
WP_002210359.1|3215837_3217676_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.3	1.9e-34
WP_012414004.1|3218117_3218948_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_012414005.1|3219080_3219278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414006.1|3219453_3221109_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	52.8	1.1e-166
WP_012303700.1|3221105_3221654_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	63.7	6.3e-55
WP_012414007.1|3221619_3222351_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	39.6	9.9e-40
WP_049772382.1|3222340_3222748_-|tail	tail assembly chaperone	tail	NA	NA	NA	NA
WP_012414010.1|3224433_3225069_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	56.9	5.9e-57
WP_012303695.1|3225061_3226246_-	hypothetical protein	NA	F1BUK6	Cronobacter_phage	65.7	2.3e-150
WP_012303694.1|3226238_3226571_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	68.3	1.5e-35
WP_012414011.1|3226570_3228547_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	48.5	2.0e-172
WP_012303692.1|3228734_3229001_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	54.9	1.0e-18
WP_012303691.1|3229150_3229492_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	40.9	6.3e-13
WP_024063639.1|3229491_3229833_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	82.2	1.5e-43
WP_012303689.1|3229829_3230120_-|holin	holin	holin	Q6K1I2	Salmonella_virus	52.8	2.2e-14
WP_012303688.1|3230129_3230582_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	59.5	2.4e-44
WP_012414012.1|3230578_3231718_-	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	65.7	3.0e-136
WP_032467120.1|3231744_3232419_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	68.2	2.8e-81
WP_012414014.1|3232418_3232907_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	41.8	1.5e-31
WP_012414015.1|3232903_3233356_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	56.7	5.2e-39
WP_012414016.1|3233451_3234150_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	2.5e-64
WP_012414017.1|3234160_3235192_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	76.1	2.1e-144
WP_012414018.1|3235246_3236101_-|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	48.8	1.1e-66
WP_012414019.1|3236267_3238055_+	hypothetical protein	NA	F1BUM5	Cronobacter_phage	66.4	1.5e-235
WP_106439437.1|3238102_3239074_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	69.5	1.9e-139
WP_012414021.1|3239124_3239391_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	68.2	3.6e-32
WP_012414022.1|3239686_3241774_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	61.0	8.1e-228
WP_012414023.1|3241770_3242010_-	DUF2732 family protein	NA	NA	NA	NA	NA
WP_012414024.1|3242088_3242496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414025.1|3242505_3242880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414026.1|3242882_3243086_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_012414027.1|3243093_3243603_-	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	51.8	2.4e-40
WP_012414028.1|3243634_3243856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414029.1|3243970_3244549_+	phage repressor protein	NA	F1BUN8	Cronobacter_phage	32.8	2.1e-29
>prophage 1
NZ_CP009779	Yersinia pseudotuberculosis PB1/+ plasmid pYAB, complete sequence	69812	4235	27626	69812	protease,transposase	Enterobacteria_phage(50.0%)	23	NA	NA
WP_011191374.1|4235_5204_-|protease	T3SS effector cysteine protease YopT	protease	NA	NA	NA	NA
WP_011191373.1|5703_6252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071819182.1|6849_7479_+	conjugal transfer protein TraT	NA	NA	NA	NA	NA
WP_002220902.1|9492_10659_+	plasmid-partitioning protein SopA	NA	Q7Y3Y6	Yersinia_phage	85.3	3.5e-196
WP_002213354.1|10655_11621_+	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	56.6	3.1e-89
WP_155759211.1|11780_12197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012414146.1|13061_13304_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_002213360.1|13296_13596_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002229754.1|13735_14395_-	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA	NA
WP_002213403.1|14588_14981_+	YopE transcriptional regulator YerA	NA	NA	NA	NA	NA
WP_011191364.1|15595_16768_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	95.6	1.8e-221
WP_002213267.1|17540_17966_+	type III secretion system chaperone SycH	NA	NA	NA	NA	NA
WP_086025330.1|18113_19213_-|transposase	IS3-like element ISYps8 family transposase	transposase	S5WIU1	Leptospira_phage	39.3	5.7e-47
WP_002229829.1|19312_19642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012414143.1|19780_20245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002213258.1|20263_20815_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	80.3	5.9e-77
WP_002213256.1|20978_23294_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	51.6	1.0e-279
WP_011191362.1|24279_25578_+	trimeric autotransporter adhesin YadA	NA	Q9MCI8	Enterobacteria_phage	54.2	2.0e-11
WP_106461760.1|25580_25880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042469136.1|25906_26176_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002213246.1|26244_26703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002213244.1|26874_27192_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012414142.1|27218_27626_+|transposase	transposase	transposase	S5FNT8	Shigella_phage	42.8	4.4e-21
