assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	1	146708-146786	1	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NZ_CP010905.2_163541_164219_+	NA|278aa|up_9|NZ_CP010905.2_123735_124569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP010905.2_124556_125423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP010905.2_125416_126220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP010905.2_126251_126983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP010905.2_127102_127534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP010905.2_127562_127955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP010905.2_128412_129165_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP010905.2_141757_142942_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP010905.2_143314_145666_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP010905.2_145687_146227_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP010905.2_159227_160067_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP010905.2_160063_161245_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP010905.2_161548_162451_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP010905.2_162472_163552_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP010905.2_163541_164219_+	NA	NA|72aa|down_5|NZ_CP010905.2_164261_164477_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP010905.2_164505_165585_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP010905.2_165584_166337_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP010905.2_166337_166895_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP010905.2_167064_168411_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	2	148720-148809	2	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	6	148748-148781|148748-148781|148748-148781|148748-148781|148748-148781|148748-148781	NZ_CP010905.2_17851-17884|NZ_CP010905.2_131191-131224|NZ_CP010905.2_138138-138171|NZ_CP010905.2_3137071-3137038|NZ_CP010905.2_12396-12429|NZ_CP010905.2_1195463-1195496	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NZ_CP010905.2_163541_164219_+	NA|278aa|up_9|NZ_CP010905.2_123735_124569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP010905.2_124556_125423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP010905.2_125416_126220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP010905.2_126251_126983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP010905.2_127102_127534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP010905.2_127562_127955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP010905.2_128412_129165_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP010905.2_141757_142942_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP010905.2_143314_145666_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP010905.2_145687_146227_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP010905.2_159227_160067_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP010905.2_160063_161245_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP010905.2_161548_162451_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP010905.2_162472_163552_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP010905.2_163541_164219_+	NA	NA|72aa|down_5|NZ_CP010905.2_164261_164477_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP010905.2_164505_165585_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP010905.2_165584_166337_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP010905.2_166337_166895_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP010905.2_167064_168411_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	3	1109647-1110073	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,6,6	6	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|300aa|up_8|NZ_CP010905.2_1103187_1104087_+,NA|134aa|up_6|NZ_CP010905.2_1104329_1104731_+,NA|116aa|up_5|NZ_CP010905.2_1104724_1105072_+,NA|146aa|up_3|NZ_CP010905.2_1105489_1105927_+,NA|187aa|down_0|NZ_CP010905.2_1110572_1111133_+	NA|188aa|up_9|NZ_CP010905.2_1102612_1103176_+	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|300aa|up_8|NZ_CP010905.2_1103187_1104087_+	NA	NA|78aa|up_7|NZ_CP010905.2_1104086_1104320_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_6|NZ_CP010905.2_1104329_1104731_+	NA	NA|116aa|up_5|NZ_CP010905.2_1104724_1105072_+	NA	NA|142aa|up_4|NZ_CP010905.2_1105071_1105497_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_3|NZ_CP010905.2_1105489_1105927_+	NA	NA|437aa|up_2|NZ_CP010905.2_1106097_1107408_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_1|NZ_CP010905.2_1107424_1107895_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_0|NZ_CP010905.2_1107966_1108407_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|187aa|down_0|NZ_CP010905.2_1110572_1111133_+	NA	NA|784aa|down_1|NZ_CP010905.2_1111817_1114169_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_2|NZ_CP010905.2_1114184_1114874_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_3|NZ_CP010905.2_1114866_1116837_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|NZ_CP010905.2_1116850_1117111_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|NZ_CP010905.2_1117115_1117535_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|NZ_CP010905.2_1117535_1118585_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|NZ_CP010905.2_1118577_1119195_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_8|NZ_CP010905.2_1119206_1120010_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|566aa|down_9|NZ_CP010905.2_1120027_1121725_+	pfam12810, Gly_rich, Glycine rich protein
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4	1110217-1110443	4,2	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,TTTTATATTAACTAAGTGGTATGTAAAG	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|300aa|up_8|NZ_CP010905.2_1103187_1104087_+,NA|134aa|up_6|NZ_CP010905.2_1104329_1104731_+,NA|116aa|up_5|NZ_CP010905.2_1104724_1105072_+,NA|146aa|up_3|NZ_CP010905.2_1105489_1105927_+,NA|187aa|down_0|NZ_CP010905.2_1110572_1111133_+	NA|188aa|up_9|NZ_CP010905.2_1102612_1103176_+	pfam06810, Phage_GP20, Phage minor structural protein GP20	NA|300aa|up_8|NZ_CP010905.2_1103187_1104087_+	NA	NA|78aa|up_7|NZ_CP010905.2_1104086_1104320_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_6|NZ_CP010905.2_1104329_1104731_+	NA	NA|116aa|up_5|NZ_CP010905.2_1104724_1105072_+	NA	NA|142aa|up_4|NZ_CP010905.2_1105071_1105497_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_3|NZ_CP010905.2_1105489_1105927_+	NA	NA|437aa|up_2|NZ_CP010905.2_1106097_1107408_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_1|NZ_CP010905.2_1107424_1107895_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_0|NZ_CP010905.2_1107966_1108407_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|187aa|down_0|NZ_CP010905.2_1110572_1111133_+	NA	NA|784aa|down_1|NZ_CP010905.2_1111817_1114169_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_2|NZ_CP010905.2_1114184_1114874_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_3|NZ_CP010905.2_1114866_1116837_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|NZ_CP010905.2_1116850_1117111_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|NZ_CP010905.2_1117115_1117535_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|NZ_CP010905.2_1117535_1118585_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|NZ_CP010905.2_1118577_1119195_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_8|NZ_CP010905.2_1119206_1120010_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|566aa|down_9|NZ_CP010905.2_1120027_1121725_+	pfam12810, Gly_rich, Glycine rich protein
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	5	1195498-1195586	5	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTGCGTTAGCACTTTAAGTAACGGAAT	27	1	3	1195525-1195559|1195525-1195559|1195525-1195559	NZ_CP010905.2_131253-131287|NZ_CP010905.2_138200-138234|NZ_CP010905.2_17913-17947	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|638aa|down_2|NZ_CP010905.2_1203968_1205882_+	NA|279aa|up_9|NZ_CP010905.2_1181436_1182273_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|262aa|up_8|NZ_CP010905.2_1182266_1183052_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|351aa|up_7|NZ_CP010905.2_1183051_1184104_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|283aa|up_6|NZ_CP010905.2_1184333_1185182_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|555aa|up_5|NZ_CP010905.2_1185171_1186836_+	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|419aa|up_4|NZ_CP010905.2_1186884_1188141_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|694aa|up_3|NZ_CP010905.2_1188163_1190245_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|362aa|up_2|NZ_CP010905.2_1190281_1191367_+	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|375aa|up_1|NZ_CP010905.2_1191420_1192545_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|325aa|up_0|NZ_CP010905.2_1192622_1193597_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|673aa|down_0|NZ_CP010905.2_1199191_1201210_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|671aa|down_1|NZ_CP010905.2_1201714_1203727_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|638aa|down_2|NZ_CP010905.2_1203968_1205882_+	NA	NA|740aa|down_3|NZ_CP010905.2_1205874_1208094_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|277aa|down_4|NZ_CP010905.2_1208202_1209033_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1156aa|down_5|NZ_CP010905.2_1209022_1212490_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1276aa|down_6|NZ_CP010905.2_1212489_1216317_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|404aa|down_7|NZ_CP010905.2_1216362_1217574_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|1176aa|down_8|NZ_CP010905.2_1217560_1221088_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|418aa|down_9|NZ_CP010905.2_1221218_1222472_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	6	1419380-1420263	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,13	13	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|52aa|down_0|NZ_CP010905.2_1421446_1421602_+,NA|73aa|down_1|NZ_CP010905.2_1421880_1422099_+,NA|128aa|down_2|NZ_CP010905.2_1423319_1423703_-,NA|115aa|down_3|NZ_CP010905.2_1423829_1424174_+,NA|72aa|down_4|NZ_CP010905.2_1424356_1424572_+,NA|106aa|down_5|NZ_CP010905.2_1425557_1425875_-,NA|65aa|down_8|NZ_CP010905.2_1428260_1428455_-	NA|271aa|up_9|NZ_CP010905.2_1406489_1407302_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|NZ_CP010905.2_1407505_1408831_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_CP010905.2_1409043_1410123_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_CP010905.2_1410294_1410969_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_CP010905.2_1410955_1412203_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NZ_CP010905.2_1412274_1413939_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|NZ_CP010905.2_1414035_1414320_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|NZ_CP010905.2_1414342_1415860_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|NZ_CP010905.2_1415984_1416806_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|NZ_CP010905.2_1416996_1418424_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|52aa|down_0|NZ_CP010905.2_1421446_1421602_+	NA	NA|73aa|down_1|NZ_CP010905.2_1421880_1422099_+	NA	NA|128aa|down_2|NZ_CP010905.2_1423319_1423703_-	NA	NA|115aa|down_3|NZ_CP010905.2_1423829_1424174_+	NA	NA|72aa|down_4|NZ_CP010905.2_1424356_1424572_+	NA	NA|106aa|down_5|NZ_CP010905.2_1425557_1425875_-	NA	NA|130aa|down_6|NZ_CP010905.2_1426935_1427325_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_7|NZ_CP010905.2_1427649_1428159_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_8|NZ_CP010905.2_1428260_1428455_-	NA	NA|131aa|down_9|NZ_CP010905.2_1428970_1429363_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	7	1629819-1630643	4,7,3	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	11,12,12	12	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|80aa|down_4|NZ_CP010905.2_1637789_1638029_+	NA|419aa|up_9|NZ_CP010905.2_1617938_1619195_+	PRK00549, PRK00549, competence damage-inducible protein A; Provisional	NA|260aa|up_8|NZ_CP010905.2_1619252_1620032_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_7|NZ_CP010905.2_1620125_1620710_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_6|NZ_CP010905.2_1620909_1622340_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_5|NZ_CP010905.2_1622657_1623602_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_4|NZ_CP010905.2_1623872_1624808_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_3|NZ_CP010905.2_1624926_1625520_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_2|NZ_CP010905.2_1625626_1626055_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_1|NZ_CP010905.2_1626121_1626790_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_0|NZ_CP010905.2_1626907_1628263_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|578aa|down_0|NZ_CP010905.2_1630968_1632702_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_CP010905.2_1632941_1633787_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP010905.2_1633817_1636052_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP010905.2_1636835_1637645_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP010905.2_1637789_1638029_+	NA	NA|225aa|down_5|NZ_CP010905.2_1638896_1639571_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|122aa|down_6|NZ_CP010905.2_1640421_1640787_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_7|NZ_CP010905.2_1641251_1642037_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|275aa|down_8|NZ_CP010905.2_1642133_1642958_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	DinG|1040aa|down_9|NZ_CP010905.2_1643178_1646298_+	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	8	1740903-1741458	5,8,4	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	1	1	1740998-1741033	NZ_CP010905.2_1088288-1088323	I-A:I-A:I-A	8,8,8	8	TypeV	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|190aa|up_7|NZ_CP010905.2_1730774_1731344_+,NA|61aa|up_4|NZ_CP010905.2_1734293_1734476_-,NA|95aa|down_0|NZ_CP010905.2_1741625_1741910_-,NA|330aa|down_5|NZ_CP010905.2_1746359_1747349_+	NA|195aa|up_9|NZ_CP010905.2_1729133_1729718_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|300aa|up_8|NZ_CP010905.2_1729870_1730770_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP010905.2_1730774_1731344_+	NA	NA|216aa|up_6|NZ_CP010905.2_1731510_1732158_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP010905.2_1732547_1733462_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP010905.2_1734293_1734476_-	NA	NA|283aa|up_3|NZ_CP010905.2_1734905_1735754_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP010905.2_1735772_1736600_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP010905.2_1736574_1737498_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP010905.2_1738150_1740244_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NZ_CP010905.2_1741625_1741910_-	NA	NA|273aa|down_1|NZ_CP010905.2_1742116_1742935_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_CP010905.2_1743067_1745188_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_CP010905.2_1745213_1745441_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_CP010905.2_1745767_1746208_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NZ_CP010905.2_1746359_1747349_+	NA	NA|403aa|down_6|NZ_CP010905.2_1747825_1749034_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_CP010905.2_1749094_1749976_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NZ_CP010905.2_1750361_1751306_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_CP010905.2_1751528_1752074_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	9	1920107-1921120	6,9,5	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	12,15,15	15	TypeV	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|NZ_CP010905.2_1921528_1921816_+,NA|341aa|down_5|NZ_CP010905.2_1928886_1929909_+,NA|258aa|down_7|NZ_CP010905.2_1930815_1931589_+	NA|329aa|up_9|NZ_CP010905.2_1902320_1903307_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_8|NZ_CP010905.2_1903790_1905521_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_7|NZ_CP010905.2_1906045_1906561_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_6|NZ_CP010905.2_1907366_1909841_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|NZ_CP010905.2_1909840_1911298_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|NZ_CP010905.2_1911720_1914078_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|NZ_CP010905.2_1914163_1914481_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|373aa|up_2|NZ_CP010905.2_1915499_1916618_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|NZ_CP010905.2_1916793_1917549_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|NZ_CP010905.2_1918188_1919460_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|NZ_CP010905.2_1921528_1921816_+	NA	NA|184aa|down_1|NZ_CP010905.2_1922354_1922906_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP010905.2_1923096_1924059_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP010905.2_1924353_1926198_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|177aa|down_4|NZ_CP010905.2_1926502_1927033_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|341aa|down_5|NZ_CP010905.2_1928886_1929909_+	NA	NA|296aa|down_6|NZ_CP010905.2_1929922_1930810_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_7|NZ_CP010905.2_1930815_1931589_+	NA	NA|242aa|down_8|NZ_CP010905.2_1931700_1932426_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|down_9|NZ_CP010905.2_1932429_1933833_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	10	2283228-2283395	7	PILER-CR	no	csa3	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type I-A	AGTTTTATATCAACTATGTGGTATGTAAAGTTTTTA	36	0	0	NA	NA	I-A	2	2	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|133aa|up_2|NZ_CP010905.2_2279737_2280136_-,NA|20aa|down_5|NZ_CP010905.2_2287531_2287591_+	NA|97aa|up_9|NZ_CP010905.2_2269405_2269696_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|119aa|up_8|NZ_CP010905.2_2270979_2271336_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|204aa|up_7|NZ_CP010905.2_2272734_2273346_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_6|NZ_CP010905.2_2273643_2273982_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_5|NZ_CP010905.2_2274388_2275825_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|479aa|up_4|NZ_CP010905.2_2276072_2277509_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|184aa|up_3|NZ_CP010905.2_2278336_2278888_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_2|NZ_CP010905.2_2279737_2280136_-	NA	NA|162aa|up_1|NZ_CP010905.2_2280491_2280977_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|67aa|up_0|NZ_CP010905.2_2282669_2282870_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NZ_CP010905.2_2283620_2283803_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_1|NZ_CP010905.2_2283873_2284719_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|111aa|down_2|NZ_CP010905.2_2285647_2285980_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_3|NZ_CP010905.2_2286223_2286865_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_4|NZ_CP010905.2_2286845_2287139_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|20aa|down_5|NZ_CP010905.2_2287531_2287591_+	NA	NA|251aa|down_6|NZ_CP010905.2_2288106_2288859_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_7|NZ_CP010905.2_2288917_2290573_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|360aa|down_8|NZ_CP010905.2_2291845_2292925_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|219aa|down_9|NZ_CP010905.2_2293008_2293665_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	11	2647541-2648492	10,6,8	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_3|NZ_CP010905.2_2643795_2644209_+,NA|99aa|up_2|NZ_CP010905.2_2644227_2644524_+,NA|106aa|up_1|NZ_CP010905.2_2644806_2645124_+,NA|155aa|up_0|NZ_CP010905.2_2645259_2645724_+,NA|108aa|down_1|NZ_CP010905.2_2650301_2650625_-,NA|85aa|down_2|NZ_CP010905.2_2650660_2650915_-,NA|57aa|down_5|NZ_CP010905.2_2654702_2654873_+	NA|234aa|up_9|NZ_CP010905.2_2638202_2638904_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|108aa|up_8|NZ_CP010905.2_2638896_2639220_+	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|687aa|up_7|NZ_CP010905.2_2639425_2641486_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_6|NZ_CP010905.2_2641681_2642374_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_5|NZ_CP010905.2_2642985_2643360_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_4|NZ_CP010905.2_2643578_2643812_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_3|NZ_CP010905.2_2643795_2644209_+	NA	NA|99aa|up_2|NZ_CP010905.2_2644227_2644524_+	NA	NA|106aa|up_1|NZ_CP010905.2_2644806_2645124_+	NA	NA|155aa|up_0|NZ_CP010905.2_2645259_2645724_+	NA	NA|308aa|down_0|NZ_CP010905.2_2648758_2649682_-	pfam09851, SHOCT, Short C-terminal domain	NA|108aa|down_1|NZ_CP010905.2_2650301_2650625_-	NA	NA|85aa|down_2|NZ_CP010905.2_2650660_2650915_-	NA	NA|126aa|down_3|NZ_CP010905.2_2652638_2653016_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_4|NZ_CP010905.2_2653819_2654314_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_5|NZ_CP010905.2_2654702_2654873_+	NA	NA|117aa|down_6|NZ_CP010905.2_2655700_2656051_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_7|NZ_CP010905.2_2656052_2656253_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|67aa|down_8|NZ_CP010905.2_2656976_2657177_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|271aa|down_9|NZ_CP010905.2_2657811_2658624_+	cd13517, PBP2_ModA3_like, Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	12	2810174-2810331	9	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGG---------ATTTCA	37	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|NZ_CP010905.2_2814756_2816232_-,NA|59aa|down_5|NZ_CP010905.2_2817074_2817251_-	NA|448aa|up_9|NZ_CP010905.2_2802630_2803974_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NZ_CP010905.2_2803986_2804223_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP010905.2_2804435_2804999_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP010905.2_2805191_2805689_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP010905.2_2805799_2806243_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP010905.2_2806272_2806452_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP010905.2_2806614_2806965_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP010905.2_2807007_2808306_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP010905.2_2808307_2809066_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP010905.2_2809084_2810032_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP010905.2_2810472_2812881_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_CP010905.2_2812907_2813705_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|NZ_CP010905.2_2813720_2814737_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_CP010905.2_2814756_2816232_-	NA	cas6|246aa|down_4|NZ_CP010905.2_2816236_2816974_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|59aa|down_5|NZ_CP010905.2_2817074_2817251_-	NA	NA|370aa|down_6|NZ_CP010905.2_2817709_2818819_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|NZ_CP010905.2_2818848_2819616_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_8|NZ_CP010905.2_2819803_2821177_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|NZ_CP010905.2_2821212_2822148_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	13	2892089-2892514	10,11,7	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA	NA|253aa|up_9|NZ_CP010905.2_2880426_2881185_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|NZ_CP010905.2_2881315_2882668_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|NZ_CP010905.2_2882764_2884315_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|NZ_CP010905.2_2884365_2885181_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|NZ_CP010905.2_2885201_2885684_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|NZ_CP010905.2_2885967_2886348_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|NZ_CP010905.2_2886442_2887660_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|NZ_CP010905.2_2888318_2889947_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|NZ_CP010905.2_2890067_2891063_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|NZ_CP010905.2_2891240_2891624_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|457aa|down_0|NZ_CP010905.2_2893316_2894687_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|373aa|down_1|NZ_CP010905.2_2894900_2896019_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_2|NZ_CP010905.2_2896335_2897004_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_3|NZ_CP010905.2_2897857_2900278_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_4|NZ_CP010905.2_2900631_2900982_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_5|NZ_CP010905.2_2901098_2901671_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_6|NZ_CP010905.2_2901671_2902361_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_7|NZ_CP010905.2_2902636_2903275_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_8|NZ_CP010905.2_2903427_2905431_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|214aa|down_9|NZ_CP010905.2_2905604_2906246_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	14	3124102-3124427	12	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NZ_CP010905.2_3127290_3127611_-,NA|664aa|down_3|NZ_CP010905.2_3127600_3129592_-,NA|458aa|down_7|NZ_CP010905.2_3140381_3141755_-	NA|218aa|up_9|NZ_CP010905.2_3109088_3109742_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP010905.2_3110244_3111588_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP010905.2_3111766_3113131_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NZ_CP010905.2_3113308_3115174_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP010905.2_3115409_3116627_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP010905.2_3116826_3117690_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP010905.2_3117771_3119694_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP010905.2_3119772_3120621_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP010905.2_3121033_3121915_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|270aa|up_0|NZ_CP010905.2_3122122_3122932_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP010905.2_3125186_3126200_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|292aa|down_1|NZ_CP010905.2_3126223_3127099_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP010905.2_3127290_3127611_-	NA	NA|664aa|down_3|NZ_CP010905.2_3127600_3129592_-	NA	NA|848aa|down_4|NZ_CP010905.2_3129714_3132258_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP010905.2_3133001_3133679_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP010905.2_3139071_3140010_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP010905.2_3140381_3141755_-	NA	NA|441aa|down_8|NZ_CP010905.2_3141983_3143306_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP010905.2_3143298_3144003_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	15	3179060-3179235	13	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	2	2	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP010905.2_3180528_3181194_+	NA|205aa|up_9|NZ_CP010905.2_3167088_3167703_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP010905.2_3167717_3168167_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP010905.2_3168191_3170399_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP010905.2_3170472_3170985_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP010905.2_3170997_3173448_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP010905.2_3173460_3175125_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP010905.2_3175422_3175920_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP010905.2_3175948_3177328_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP010905.2_3177632_3177779_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP010905.2_3177808_3178387_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP010905.2_3180528_3181194_+	NA	NA|901aa|down_1|NZ_CP010905.2_3181699_3184402_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP010905.2_3184427_3185978_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP010905.2_3186300_3188013_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP010905.2_3188366_3188627_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP010905.2_3188819_3190031_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP010905.2_3190262_3191996_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP010905.2_3192035_3192434_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP010905.2_3192436_3193984_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP010905.2_3194298_3195204_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	16	3179342-3179631	14	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP010905.2_3180528_3181194_+	NA|205aa|up_9|NZ_CP010905.2_3167088_3167703_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP010905.2_3167717_3168167_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP010905.2_3168191_3170399_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP010905.2_3170472_3170985_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP010905.2_3170997_3173448_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP010905.2_3173460_3175125_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP010905.2_3175422_3175920_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP010905.2_3175948_3177328_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP010905.2_3177632_3177779_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP010905.2_3177808_3178387_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP010905.2_3180528_3181194_+	NA	NA|901aa|down_1|NZ_CP010905.2_3181699_3184402_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP010905.2_3184427_3185978_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP010905.2_3186300_3188013_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP010905.2_3188366_3188627_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP010905.2_3188819_3190031_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP010905.2_3190262_3191996_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP010905.2_3192035_3192434_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP010905.2_3192436_3193984_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP010905.2_3194298_3195204_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	17	3179834-3179924	15	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP010905.2_3180528_3181194_+	NA|205aa|up_9|NZ_CP010905.2_3167088_3167703_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP010905.2_3167717_3168167_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP010905.2_3168191_3170399_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP010905.2_3170472_3170985_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP010905.2_3170997_3173448_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP010905.2_3173460_3175125_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP010905.2_3175422_3175920_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP010905.2_3175948_3177328_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP010905.2_3177632_3177779_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP010905.2_3177808_3178387_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP010905.2_3180528_3181194_+	NA	NA|901aa|down_1|NZ_CP010905.2_3181699_3184402_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP010905.2_3184427_3185978_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP010905.2_3186300_3188013_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP010905.2_3188366_3188627_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP010905.2_3188819_3190031_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP010905.2_3190262_3191996_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP010905.2_3192035_3192434_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP010905.2_3192436_3193984_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP010905.2_3194298_3195204_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	18	3288485-3288696	16	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TCTTCTGATGGTGGTACTGGAGGATT	26	0	0	NA	NA	NA	3	3	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|459aa|up_6|NZ_CP010905.2_3280021_3281398_+,NA	NA|169aa|up_9|NZ_CP010905.2_3277412_3277919_-	PRK10519, PRK10519, hypothetical protein; Provisional	NA|216aa|up_8|NZ_CP010905.2_3277920_3278568_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_7|NZ_CP010905.2_3278581_3279754_-	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|459aa|up_6|NZ_CP010905.2_3280021_3281398_+	NA	NA|177aa|up_5|NZ_CP010905.2_3282333_3282864_-	pfam12641, Flavodoxin_3, Flavodoxin domain	NA|365aa|up_4|NZ_CP010905.2_3282939_3284034_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|149aa|up_3|NZ_CP010905.2_3284035_3284482_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|397aa|up_2|NZ_CP010905.2_3284787_3285978_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|321aa|up_1|NZ_CP010905.2_3286147_3287110_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|221aa|up_0|NZ_CP010905.2_3287231_3287894_-	cd20183, M34_PPEP, Pro-Pro endopeptidase (PPEP) and similar proteins; belongs to peptidase family M34	NA|393aa|down_0|NZ_CP010905.2_3291512_3292691_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|925aa|down_1|NZ_CP010905.2_3293315_3296090_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|419aa|down_2|NZ_CP010905.2_3296261_3297518_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|517aa|down_3|NZ_CP010905.2_3297589_3299140_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|397aa|down_4|NZ_CP010905.2_3299182_3300373_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|363aa|down_5|NZ_CP010905.2_3300611_3301700_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_6|NZ_CP010905.2_3301984_3302683_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|502aa|down_7|NZ_CP010905.2_3302796_3304302_-	cd16956, HATPase_YehU-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU	NA|424aa|down_8|NZ_CP010905.2_3304717_3305989_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|535aa|down_9|NZ_CP010905.2_3306804_3308409_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	19	3381349-3381576	17,11	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,TTTTATATTAACTATGTGGTATGTAAA	29,27	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|187aa|up_0|NZ_CP010905.2_3380658_3381219_-,NA|146aa|down_3|NZ_CP010905.2_3385864_3386302_-,NA|116aa|down_5|NZ_CP010905.2_3386719_3387067_-,NA|134aa|down_6|NZ_CP010905.2_3387060_3387462_-,NA|300aa|down_8|NZ_CP010905.2_3387704_3388604_-	NA|268aa|up_9|NZ_CP010905.2_3371782_3372586_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NZ_CP010905.2_3372597_3373215_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NZ_CP010905.2_3373207_3374257_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NZ_CP010905.2_3374257_3374677_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NZ_CP010905.2_3374681_3374942_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NZ_CP010905.2_3374955_3376926_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NZ_CP010905.2_3376918_3377608_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NZ_CP010905.2_3377623_3379975_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NZ_CP010905.2_3380045_3380615_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NZ_CP010905.2_3380658_3381219_-	NA	NA|147aa|down_0|NZ_CP010905.2_3383384_3383825_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_1|NZ_CP010905.2_3383896_3384367_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_2|NZ_CP010905.2_3384383_3385694_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|146aa|down_3|NZ_CP010905.2_3385864_3386302_-	NA	NA|142aa|down_4|NZ_CP010905.2_3386294_3386720_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_5|NZ_CP010905.2_3386719_3387067_-	NA	NA|134aa|down_6|NZ_CP010905.2_3387060_3387462_-	NA	NA|78aa|down_7|NZ_CP010905.2_3387471_3387705_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|300aa|down_8|NZ_CP010905.2_3387704_3388604_-	NA	NA|188aa|down_9|NZ_CP010905.2_3388615_3389179_-	pfam06810, Phage_GP20, Phage minor structural protein GP20
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	20	3381720-3382145	18,8,12	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,4	6	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|187aa|up_0|NZ_CP010905.2_3380658_3381219_-,NA|146aa|down_3|NZ_CP010905.2_3385864_3386302_-,NA|116aa|down_5|NZ_CP010905.2_3386719_3387067_-,NA|134aa|down_6|NZ_CP010905.2_3387060_3387462_-,NA|300aa|down_8|NZ_CP010905.2_3387704_3388604_-	NA|268aa|up_9|NZ_CP010905.2_3371782_3372586_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NZ_CP010905.2_3372597_3373215_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NZ_CP010905.2_3373207_3374257_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NZ_CP010905.2_3374257_3374677_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NZ_CP010905.2_3374681_3374942_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NZ_CP010905.2_3374955_3376926_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NZ_CP010905.2_3376918_3377608_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NZ_CP010905.2_3377623_3379975_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NZ_CP010905.2_3380045_3380615_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NZ_CP010905.2_3380658_3381219_-	NA	NA|147aa|down_0|NZ_CP010905.2_3383384_3383825_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_1|NZ_CP010905.2_3383896_3384367_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_2|NZ_CP010905.2_3384383_3385694_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|146aa|down_3|NZ_CP010905.2_3385864_3386302_-	NA	NA|142aa|down_4|NZ_CP010905.2_3386294_3386720_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_5|NZ_CP010905.2_3386719_3387067_-	NA	NA|134aa|down_6|NZ_CP010905.2_3387060_3387462_-	NA	NA|78aa|down_7|NZ_CP010905.2_3387471_3387705_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|300aa|down_8|NZ_CP010905.2_3387704_3388604_-	NA	NA|188aa|down_9|NZ_CP010905.2_3388615_3389179_-	pfam06810, Phage_GP20, Phage minor structural protein GP20
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	21	3440011-3441286	19,9,13	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	19,17,16	19	Unclear	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP010905.2_3432904_3433105_+,NA|260aa|up_1|NZ_CP010905.2_3438287_3439067_+,NA	NA|740aa|up_9|NZ_CP010905.2_3427251_3429471_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP010905.2_3429746_3432401_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP010905.2_3432904_3433105_+	NA	NA|197aa|up_6|NZ_CP010905.2_3433311_3433902_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP010905.2_3433904_3434780_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP010905.2_3434855_3436247_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP010905.2_3436250_3437387_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP010905.2_3437418_3437964_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP010905.2_3438287_3439067_+	NA	NA|143aa|up_0|NZ_CP010905.2_3439521_3439950_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP010905.2_3441469_3441736_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP010905.2_3441738_3442719_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_CP010905.2_3442721_3443240_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP010905.2_3443287_3445609_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP010905.2_3445619_3446321_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP010905.2_3446322_3447237_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP010905.2_3447238_3449116_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP010905.2_3449121_3449859_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP010905.2_3449936_3450854_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP010905.2_3451133_3453050_-	pfam02687, FtsX, FtsX-like permease family
GCF_000932055.2_ASM93205v2	NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	22	4134758-4134843	20	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AAAGTGCTAAAGCACGTCGCCAAC	24	1	2	4134782-4134819|4134782-4134819	NZ_CP010905.2_12421-12384|NZ_CP010905.2_3137046-3137083	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,PD-DExK,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|65aa|down_0|NZ_CP010905.2_4136716_4136911_-	NA|477aa|up_9|NZ_CP010905.2_4122483_4123914_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|143aa|up_8|NZ_CP010905.2_4123950_4124379_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|235aa|up_7|NZ_CP010905.2_4124566_4125271_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|278aa|up_6|NZ_CP010905.2_4125293_4126127_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|249aa|up_5|NZ_CP010905.2_4126127_4126874_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|298aa|up_4|NZ_CP010905.2_4126951_4127845_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|312aa|up_3|NZ_CP010905.2_4127841_4128777_-	PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated	NA|230aa|up_2|NZ_CP010905.2_4128779_4129469_-	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|470aa|up_1|NZ_CP010905.2_4129599_4131009_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|64aa|up_0|NZ_CP010905.2_4131163_4131355_-	pfam04070, DUF378, Domain of unknown function (DUF378)	NA|65aa|down_0|NZ_CP010905.2_4136716_4136911_-	NA	NA|510aa|down_1|NZ_CP010905.2_4137219_4138749_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|160aa|down_2|NZ_CP010905.2_4138763_4139243_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|323aa|down_3|NZ_CP010905.2_4139351_4140320_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|257aa|down_4|NZ_CP010905.2_4140456_4141227_-	PRK13318, PRK13318, type III pantothenate kinase	NA|197aa|down_5|NZ_CP010905.2_4141245_4141836_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|323aa|down_6|NZ_CP010905.2_4142019_4142988_-	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|326aa|down_7|NZ_CP010905.2_4142980_4143958_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|657aa|down_8|NZ_CP010905.2_4144272_4146243_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|463aa|down_9|NZ_CP010905.2_4146276_4147665_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain
