assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000953235.1_ILRI181.1	NZ_LN515399	Mycoplasma capricolum subsp. capripneumoniae strain ILRI181 chromosome 1	1	249338-249446	1	CRISPRCasFinder	no		DEDDh	Orphan	AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|233aa|up_8|NZ_LN515399.1_220916_221615_+,NA|175aa|up_4|NZ_LN515399.1_232673_233198_+,NA|122aa|down_3|NZ_LN515399.1_254365_254731_-,NA|65aa|down_4|NZ_LN515399.1_254914_255109_-,NA|146aa|down_5|NZ_LN515399.1_255305_255743_-,NA|104aa|down_6|NZ_LN515399.1_256040_256352_-,NA|127aa|down_7|NZ_LN515399.1_257032_257413_+,NA|383aa|down_8|NZ_LN515399.1_257375_258524_-,NA|289aa|down_9|NZ_LN515399.1_259065_259932_-	NA|64aa|up_9|NZ_LN515399.1_220777_220969_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|233aa|up_8|NZ_LN515399.1_220916_221615_+	NA	NA|294aa|up_7|NZ_LN515399.1_223501_224383_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|547aa|up_6|NZ_LN515399.1_224416_226057_-	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family	NA|600aa|up_5|NZ_LN515399.1_226794_228594_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|175aa|up_4|NZ_LN515399.1_232673_233198_+	NA	NA|598aa|up_3|NZ_LN515399.1_244068_245862_-	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F	NA|228aa|up_2|NZ_LN515399.1_245861_246545_-	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S	NA|452aa|up_1|NZ_LN515399.1_246561_247917_-	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|432aa|up_0|NZ_LN515399.1_248032_249328_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|207aa|down_0|NZ_LN515399.1_249570_250191_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|226aa|down_1|NZ_LN515399.1_250190_250868_+	pfam02417, Chromate_transp, Chromate transporter	NA|127aa|down_2|NZ_LN515399.1_251135_251516_+	pfam07751, Abi_2, Abi-like protein	NA|122aa|down_3|NZ_LN515399.1_254365_254731_-	NA	NA|65aa|down_4|NZ_LN515399.1_254914_255109_-	NA	NA|146aa|down_5|NZ_LN515399.1_255305_255743_-	NA	NA|104aa|down_6|NZ_LN515399.1_256040_256352_-	NA	NA|127aa|down_7|NZ_LN515399.1_257032_257413_+	NA	NA|383aa|down_8|NZ_LN515399.1_257375_258524_-	NA	NA|289aa|down_9|NZ_LN515399.1_259065_259932_-	NA
GCF_000953235.1_ILRI181.1	NZ_LN515399	Mycoplasma capricolum subsp. capripneumoniae strain ILRI181 chromosome 1	2	358454-358640	1	PILER-CR	no		DEDDh	Orphan	ACCAACCCATTGGTAACTGAGATACTTCAAATGTAACTGATATGCGTTGTAT	52	1	1	358506-358528	NZ_LN515399.1_436813-436835	NA	2	2	Orphan	DEDDh	NA|46aa|up_8|NZ_LN515399.1_352245_352383_+,NA|216aa|up_7|NZ_LN515399.1_352400_353048_+,NA|202aa|up_5|NZ_LN515399.1_353535_354141_+,NA|86aa|up_4|NZ_LN515399.1_354568_354826_+,NA|71aa|up_2|NZ_LN515399.1_355887_356100_+,NA|64aa|up_1|NZ_LN515399.1_357630_357822_+,NA|94aa|up_0|NZ_LN515399.1_357911_358193_+,NA|62aa|down_0|NZ_LN515399.1_359918_360104_+,NA|204aa|down_1|NZ_LN515399.1_361170_361782_+,NA|138aa|down_2|NZ_LN515399.1_361832_362246_+,NA|126aa|down_8|NZ_LN515399.1_366929_367307_+,NA|182aa|down_9|NZ_LN515399.1_367385_367931_+	NA|151aa|up_9|NZ_LN515399.1_351744_352197_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|46aa|up_8|NZ_LN515399.1_352245_352383_+	NA	NA|216aa|up_7|NZ_LN515399.1_352400_353048_+	NA	NA|128aa|up_6|NZ_LN515399.1_353073_353457_+	pfam01719, Rep_2, Plasmid replication protein	NA|202aa|up_5|NZ_LN515399.1_353535_354141_+	NA	NA|86aa|up_4|NZ_LN515399.1_354568_354826_+	NA	NA|246aa|up_3|NZ_LN515399.1_355150_355888_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|71aa|up_2|NZ_LN515399.1_355887_356100_+	NA	NA|64aa|up_1|NZ_LN515399.1_357630_357822_+	NA	NA|94aa|up_0|NZ_LN515399.1_357911_358193_+	NA	NA|62aa|down_0|NZ_LN515399.1_359918_360104_+	NA	NA|204aa|down_1|NZ_LN515399.1_361170_361782_+	NA	NA|138aa|down_2|NZ_LN515399.1_361832_362246_+	NA	NA|183aa|down_3|NZ_LN515399.1_362813_363362_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|272aa|down_4|NZ_LN515399.1_363415_364231_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|268aa|down_5|NZ_LN515399.1_364285_365089_+	TIGR00635, Holliday_junction_ATP-dependent_DNA_helicase_RuvB, Holliday junction DNA helicase, RuvB subunit	NA|223aa|down_6|NZ_LN515399.1_365089_365758_+	pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA methyltransferase	NA|157aa|down_7|NZ_LN515399.1_366247_366718_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|126aa|down_8|NZ_LN515399.1_366929_367307_+	NA	NA|182aa|down_9|NZ_LN515399.1_367385_367931_+	NA
GCF_000953235.1_ILRI181.1	NZ_LN515399	Mycoplasma capricolum subsp. capripneumoniae strain ILRI181 chromosome 1	3	747616-747756	2	CRISPRCasFinder	no		DEDDh	Orphan	GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|478aa|up_5|NZ_LN515399.1_737636_739070_-,NA|190aa|up_2|NZ_LN515399.1_741593_742163_-,NA|155aa|up_1|NZ_LN515399.1_742381_742846_-,NA|58aa|down_0|NZ_LN515399.1_748800_748974_-,NA|318aa|down_3|NZ_LN515399.1_753515_754469_+	NA|431aa|up_9|NZ_LN515399.1_729171_730464_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|282aa|up_8|NZ_LN515399.1_732922_733768_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|245aa|up_7|NZ_LN515399.1_733971_734706_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|314aa|up_6|NZ_LN515399.1_736614_737556_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|478aa|up_5|NZ_LN515399.1_737636_739070_-	NA	NA|316aa|up_4|NZ_LN515399.1_740136_741084_-	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]	NA|171aa|up_3|NZ_LN515399.1_741049_741562_-	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase	NA|190aa|up_2|NZ_LN515399.1_741593_742163_-	NA	NA|155aa|up_1|NZ_LN515399.1_742381_742846_-	NA	NA|471aa|up_0|NZ_LN515399.1_746139_747552_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|58aa|down_0|NZ_LN515399.1_748800_748974_-	NA	NA|485aa|down_1|NZ_LN515399.1_749813_751268_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|614aa|down_2|NZ_LN515399.1_751602_753444_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|318aa|down_3|NZ_LN515399.1_753515_754469_+	NA	NA|222aa|down_4|NZ_LN515399.1_760540_761206_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|405aa|down_5|NZ_LN515399.1_762347_763562_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|down_6|NZ_LN515399.1_763690_764707_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|312aa|down_7|NZ_LN515399.1_764799_765735_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|395aa|down_8|NZ_LN515399.1_765744_766929_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|275aa|down_9|NZ_LN515399.1_767086_767911_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
GCF_000953235.1_ILRI181.1	NZ_LN515399	Mycoplasma capricolum subsp. capripneumoniae strain ILRI181 chromosome 1	4	896435-896609	3	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh	NA,NA	NA|223aa|up_9|NZ_LN515399.1_878272_878941_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_8|NZ_LN515399.1_878952_880635_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_7|NZ_LN515399.1_880799_882113_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|468aa|up_6|NZ_LN515399.1_884974_886378_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_LN515399.1_886379_887042_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|254aa|up_4|NZ_LN515399.1_888157_888919_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_LN515399.1_891106_891658_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|up_2|NZ_LN515399.1_891680_892979_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_LN515399.1_892971_894270_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_LN515399.1_894554_895355_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_LN515399.1_897265_898735_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_1|NZ_LN515399.1_898737_899688_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_2|NZ_LN515399.1_899973_901971_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_LN515399.1_901979_904820_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_LN515399.1_904812_905922_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_LN515399.1_905949_906624_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_LN515399.1_907658_909239_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_LN515399.1_909222_910155_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_LN515399.1_910163_911594_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_LN515399.1_911605_912535_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000953235.1_ILRI181.1	NZ_LN515399	Mycoplasma capricolum subsp. capripneumoniae strain ILRI181 chromosome 1	5	896747-896995	4	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh	NA,NA	NA|223aa|up_9|NZ_LN515399.1_878272_878941_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|561aa|up_8|NZ_LN515399.1_878952_880635_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|438aa|up_7|NZ_LN515399.1_880799_882113_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|468aa|up_6|NZ_LN515399.1_884974_886378_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_LN515399.1_886379_887042_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|254aa|up_4|NZ_LN515399.1_888157_888919_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_LN515399.1_891106_891658_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|433aa|up_2|NZ_LN515399.1_891680_892979_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_LN515399.1_892971_894270_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_LN515399.1_894554_895355_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_LN515399.1_897265_898735_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|317aa|down_1|NZ_LN515399.1_898737_899688_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|666aa|down_2|NZ_LN515399.1_899973_901971_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_LN515399.1_901979_904820_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_LN515399.1_904812_905922_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_LN515399.1_905949_906624_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_LN515399.1_907658_909239_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_LN515399.1_909222_910155_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_LN515399.1_910163_911594_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_LN515399.1_911605_912535_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000953235.1_ILRI181.1	NZ_LN515399	Mycoplasma capricolum subsp. capripneumoniae strain ILRI181 chromosome 1	6	980144-980245	5	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAAATATAAATAATTCAAAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|97aa|up_0|NZ_LN515399.1_979520_979811_-,NA|61aa|down_1|NZ_LN515399.1_982029_982212_+,NA|327aa|down_8|NZ_LN515399.1_989872_990853_-	NA|610aa|up_9|NZ_LN515399.1_964856_966686_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|281aa|up_8|NZ_LN515399.1_972497_973340_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_7|NZ_LN515399.1_973351_973660_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|501aa|up_6|NZ_LN515399.1_973772_975275_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|325aa|up_5|NZ_LN515399.1_975277_976252_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|105aa|up_4|NZ_LN515399.1_976253_976568_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|423aa|up_3|NZ_LN515399.1_976673_977942_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|276aa|up_2|NZ_LN515399.1_978022_978850_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|195aa|up_1|NZ_LN515399.1_978917_979502_-	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family	NA|97aa|up_0|NZ_LN515399.1_979520_979811_-	NA	NA|166aa|down_0|NZ_LN515399.1_980957_981455_+	smart00460, TGc, Transglutaminase/protease-like homologues	NA|61aa|down_1|NZ_LN515399.1_982029_982212_+	NA	NA|581aa|down_2|NZ_LN515399.1_982255_983998_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|150aa|down_3|NZ_LN515399.1_984105_984555_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|697aa|down_4|NZ_LN515399.1_984703_986794_+	pfam01732, DUF31, Putative peptidase (DUF31)	NA|302aa|down_5|NZ_LN515399.1_987530_988436_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|150aa|down_6|NZ_LN515399.1_988489_988939_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|218aa|down_7|NZ_LN515399.1_988986_989640_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|327aa|down_8|NZ_LN515399.1_989872_990853_-	NA	NA|312aa|down_9|NZ_LN515399.1_991706_992642_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases
