assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000953455.1_Ppseudo_Pa	NZ_LK391695	Pseudomonas pseudoalcaligenes genome assembly Ppseudo_Pac, chromosome : I	1	619618-619717	1	CRISPRCasFinder	no	RT	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Unclear	CCGGTTATGCGGGCGCGCGGACGTGTCATGCCT	33	0	0	NA	NA	NA	1	1	Orphan	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA|176aa|up_6|NZ_LK391695.1_613320_613848_-,NA|178aa|up_3|NZ_LK391695.1_615488_616022_-,NA|161aa|up_2|NZ_LK391695.1_616293_616776_-,NA|242aa|down_1|NZ_LK391695.1_620286_621012_-	NA|167aa|up_9|NZ_LK391695.1_608203_608704_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|212aa|up_8|NZ_LK391695.1_608867_609503_-	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	RT|474aa|up_7|NZ_LK391695.1_611419_612841_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|176aa|up_6|NZ_LK391695.1_613320_613848_-	NA	NA|299aa|up_5|NZ_LK391695.1_614123_615020_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|142aa|up_4|NZ_LK391695.1_615058_615484_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|178aa|up_3|NZ_LK391695.1_615488_616022_-	NA	NA|161aa|up_2|NZ_LK391695.1_616293_616776_-	NA	NA|422aa|up_1|NZ_LK391695.1_617226_618492_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|326aa|up_0|NZ_LK391695.1_618554_619532_-	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|146aa|down_0|NZ_LK391695.1_619836_620274_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|242aa|down_1|NZ_LK391695.1_620286_621012_-	NA	NA|308aa|down_2|NZ_LK391695.1_621177_622101_+	cd20004, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein such as CUT2	NA|258aa|down_3|NZ_LK391695.1_622180_622954_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|252aa|down_4|NZ_LK391695.1_623007_623763_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|291aa|down_5|NZ_LK391695.1_624462_625335_+	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]	NA|89aa|down_6|NZ_LK391695.1_625404_625671_+	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein	NA|148aa|down_7|NZ_LK391695.1_625745_626189_+	cd12108, Hr-like, Hemerythrin-like domain	NA|182aa|down_8|NZ_LK391695.1_626290_626836_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|567aa|down_9|NZ_LK391695.1_626941_628642_-	PRK13207, ureC, urease subunit alpha; Reviewed
GCF_000953455.1_Ppseudo_Pa	NZ_LK391695	Pseudomonas pseudoalcaligenes genome assembly Ppseudo_Pac, chromosome : I	2	832257-834606	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATGAACC,GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG	28,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	38,38,38,38	38	TypeI-E	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA|211aa|up_9|NZ_LK391695.1_818763_819396_-,NA	NA|211aa|up_9|NZ_LK391695.1_818763_819396_-	NA	NA|430aa|up_8|NZ_LK391695.1_819395_820685_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|208aa|up_7|NZ_LK391695.1_820707_821331_-	PRK00043, thiE, thiamine phosphate synthase	NA|254aa|up_6|NZ_LK391695.1_821327_822089_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|387aa|up_5|NZ_LK391695.1_822268_823429_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|249aa|up_4|NZ_LK391695.1_823519_824266_+	TIGR03950, hypothetical_protein, siderophore ferric iron reductase, AHA_1954 family	NA|256aa|up_3|NZ_LK391695.1_824259_825027_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|659aa|up_2|NZ_LK391695.1_825029_827006_+	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB	NA|214aa|up_1|NZ_LK391695.1_829883_830525_+	PRK14996, PRK14996, TetR family transcriptional regulator; Provisional	NA|550aa|up_0|NZ_LK391695.1_830521_832171_+	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	cas3|893aa|down_0|NZ_LK391695.1_834793_837472_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|94aa|down_1|NZ_LK391695.1_837474_837756_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|97aa|down_2|NZ_LK391695.1_837752_838043_-	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|84aa|down_3|NZ_LK391695.1_838308_838560_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|142aa|down_4|NZ_LK391695.1_838559_838985_+	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas8e|512aa|down_5|NZ_LK391695.1_839094_840630_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|181aa|down_6|NZ_LK391695.1_840626_841169_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|381aa|down_7|NZ_LK391695.1_841179_842322_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|221aa|down_8|NZ_LK391695.1_842324_842987_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|205aa|down_9|NZ_LK391695.1_842961_843576_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e
GCF_000953455.1_Ppseudo_Pa	NZ_LK391695	Pseudomonas pseudoalcaligenes genome assembly Ppseudo_Pac, chromosome : I	3	844856-848423	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATGAACC,GTGTTCCCCGCGCCAGCGGGGATGAACCG,GTGTTCCCCGCGCCAGCGGGGATGAACCG	28,29,29	2	2	845190-845222|845191-845222	NZ_LK391695.1_186871-186839|NZ_LK391695.1_186870-186839	I-E:I-E:I-E	57,58,58	58	TypeI-E	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA,NA|140aa|down_9|NZ_LK391695.1_856976_857396_-	NA|97aa|up_9|NZ_LK391695.1_837752_838043_-	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|84aa|up_8|NZ_LK391695.1_838308_838560_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|142aa|up_7|NZ_LK391695.1_838559_838985_+	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	cas8e|512aa|up_6|NZ_LK391695.1_839094_840630_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|181aa|up_5|NZ_LK391695.1_840626_841169_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|381aa|up_4|NZ_LK391695.1_841179_842322_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|221aa|up_3|NZ_LK391695.1_842324_842987_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|205aa|up_2|NZ_LK391695.1_842961_843576_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|296aa|up_1|NZ_LK391695.1_843602_844490_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|100aa|up_0|NZ_LK391695.1_844489_844789_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|228aa|down_0|NZ_LK391695.1_848718_849402_+	pfam01891, CbiM, Cobalt uptake substrate-specific transmembrane region	NA|491aa|down_1|NZ_LK391695.1_849499_850972_+	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|148aa|down_2|NZ_LK391695.1_851837_852281_-	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|344aa|down_3|NZ_LK391695.1_852493_853525_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|207aa|down_4|NZ_LK391695.1_853647_854268_+	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|131aa|down_5|NZ_LK391695.1_854476_854869_-	cd01040, Mb-like, myoglobin-like; M family globin domain	NA|73aa|down_6|NZ_LK391695.1_854952_855171_-	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|160aa|down_7|NZ_LK391695.1_855261_855741_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|294aa|down_8|NZ_LK391695.1_856090_856972_-	PRK09509, fieF, CDF family cation-efflux pump FieF	NA|140aa|down_9|NZ_LK391695.1_856976_857396_-	NA
GCF_000953455.1_Ppseudo_Pa	NZ_LK391695	Pseudomonas pseudoalcaligenes genome assembly Ppseudo_Pac, chromosome : I	4	4449689-4452298	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-F	ACTTCACTGCCGAGTAGGCAGCTCAGAAAA,CTTCACTGCCGTGTAGGCAGCTCAGAAA,CTTCACTGCCGNGTAGGCAGCTCAGAAA	30,28,28	0	0	NA	NA	I-F:I-F:I-F	3,43,43	43	TypeI-F	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA|102aa|up_8|NZ_LK391695.1_4439865_4440171_+,NA|141aa|up_4|NZ_LK391695.1_4445563_4445986_-,NA	NA|113aa|up_9|NZ_LK391695.1_4439456_4439795_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|102aa|up_8|NZ_LK391695.1_4439865_4440171_+	NA	NA|751aa|up_7|NZ_LK391695.1_4440329_4442582_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|532aa|up_6|NZ_LK391695.1_4442578_4444174_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|334aa|up_5|NZ_LK391695.1_4444299_4445301_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|141aa|up_4|NZ_LK391695.1_4445563_4445986_-	NA	NA|354aa|up_3|NZ_LK391695.1_4446110_4447172_+	pfam10023, Aminopep, Putative aminopeptidase	NA|77aa|up_2|NZ_LK391695.1_4447235_4447466_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|216aa|up_1|NZ_LK391695.1_4447742_4448390_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|324aa|up_0|NZ_LK391695.1_4448449_4449421_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	cas1|323aa|down_0|NZ_LK391695.1_4452352_4453321_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1117aa|down_1|NZ_LK391695.1_4453317_4456668_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|422aa|down_2|NZ_LK391695.1_4456799_4458065_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|114aa|down_3|NZ_LK391695.1_4458064_4458406_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|433aa|down_4|NZ_LK391695.1_4458696_4459995_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|318aa|down_5|NZ_LK391695.1_4460247_4461201_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	cas8f|454aa|down_6|NZ_LK391695.1_4461749_4463111_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|334aa|down_7|NZ_LK391695.1_4463103_4464105_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|down_8|NZ_LK391695.1_4464110_4465130_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|188aa|down_9|NZ_LK391695.1_4465132_4465696_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)
GCF_000953455.1_Ppseudo_Pa	NZ_LK391695	Pseudomonas pseudoalcaligenes genome assembly Ppseudo_Pac, chromosome : I	5	4465826-4467893	5,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	Type I-F	GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	33,34,34	34	TypeI-F	RT,PrimPol,csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,PD-DExK,DinG,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f,TnsE_C	NA,NA	cas1|323aa|up_9|NZ_LK391695.1_4452352_4453321_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1117aa|up_8|NZ_LK391695.1_4453317_4456668_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|422aa|up_7|NZ_LK391695.1_4456799_4458065_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|114aa|up_6|NZ_LK391695.1_4458064_4458406_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|433aa|up_5|NZ_LK391695.1_4458696_4459995_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|318aa|up_4|NZ_LK391695.1_4460247_4461201_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	cas8f|454aa|up_3|NZ_LK391695.1_4461749_4463111_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|334aa|up_2|NZ_LK391695.1_4463103_4464105_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|up_1|NZ_LK391695.1_4464110_4465130_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|188aa|up_0|NZ_LK391695.1_4465132_4465696_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|163aa|down_0|NZ_LK391695.1_4468000_4468489_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|181aa|down_1|NZ_LK391695.1_4468497_4469040_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|683aa|down_2|NZ_LK391695.1_4469169_4471218_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|98aa|down_3|NZ_LK391695.1_4471214_4471508_+	pfam09526, DUF2387, Probable metal-binding protein (DUF2387)	NA|264aa|down_4|NZ_LK391695.1_4471577_4472369_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|329aa|down_5|NZ_LK391695.1_4472450_4473437_+	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|354aa|down_6|NZ_LK391695.1_4473512_4474574_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|98aa|down_7|NZ_LK391695.1_4474612_4474906_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|243aa|down_8|NZ_LK391695.1_4474940_4475669_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|101aa|down_9|NZ_LK391695.1_4475823_4476126_-	smart00938, P-II, Nitrogen regulatory protein P-II
